mRNA_H-paniculata_contig5438.12888.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5438.12888.1
Unique NamemRNA_H-paniculata_contig5438.12888.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig5438.12888.1 vs. uniprot
Match: D7FZH2_ECTSI (Mago-bind domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZH2_ECTSI)

HSP 1 Score: 189 bits (479), Expect = 1.650e-52
Identity = 121/204 (59.31%), Postives = 139/204 (68.14%), Query Frame = 3 
Query:  108 MAKSVPIGAIVNENGDVVIPATQRPDGTWRKERKLKTGYIPQEEVARFETKGTQNQKYLANRLPPGMAPE----PEKPKQQTAASKKNAARAAQRKAKRAAEKTMDGEA---------GVADAAGALAELTVSGGGKESGXXXXXXNGSGVVDVAKKVKALHKKIRQVEELEAKVAAGQVQPTDEQRQKIARKPALLAELAELE 680
            MA +VPIGA+  ENGDVV+PATQRPDGTWRKER++K GYIPQ+EVA+FET+GTQNQKYL NRLPPGMAPE    P KP   TAA KKN AR                           GV  AA AL  L VS GG   G        S  +D A+K+KAL+KKIRQVEELEAKV +G+V PT+EQRQK+ARKPAL+AELAEL+
Sbjct:    1 MASAVPIGAVAKENGDVVLPATQRPDGTWRKERRIKKGYIPQDEVAKFETRGTQNQKYLKNRLPPGMAPESASEPNKPL--TAAQKKNQARXXXXXXXXXXXXXXXXXXXXXXXXXXDGVETAAKALGGLKVSAGG---GGASGEQTASEPLDSARKIKALNKKIRQVEELEAKVTSGEVVPTEEQRQKLARKPALVAELAELQ 199
[Close]
BLAST of mRNA_H-paniculata_contig5438.12888.1 vs. uniprot
Match: UPI000D736602 (partner of Y14 and mago-like n=1 Tax=Pomacea canaliculata TaxID=400727 RepID=UPI000D736602)

HSP 1 Score: 102 bits (254), Expect = 3.140e-21
Identity = 77/204 (37.75%), Postives = 122/204 (59.80%), Query Frame = 3 
Query:  108 MAKSVPIGAIVNEN--GDVVIPATQRPDGTWRKERKLKTGYIPQEEVARFETKGTQNQKYLANRL--PPGMAPEPEKPKQQTA--------ASKKNAARAAQRKAKRAAEKTMDGEAGVADAAGALAELTVSGGGKESGXXXXXXNGSGVVDVAKKVKALHKKIRQVEELEAKVAAGQVQ-PTDEQRQKIARKPALLAELAELE 680
            MA  +    +V +   G+++IPA+QRPDGTWRK R++K GYIPQEEV  FE+KGTQ   +L +R   P G++PE  +  +QT         A   + ++AA++ AKR  +K  D ++ V      + ++T++     S             D+AKK+K L KK++Q+EELE K+ +G+++ P  +Q +KI+RK A+L E+ +LE
Sbjct:    1 MASQIEREGVVRDEKTGELIIPASQRPDGTWRKARRVKDGYIPQEEVPIFESKGTQ---WLKSRPTHPIGLSPEDVEKMEQTKKMLADPKPAQPMHTSKAAKKNAKRKEKKRQDAKSSVTKC---IEQVTITAKSCSSNPESEDLK----PDLAKKLKNLKKKLKQIEELENKIKSGELKNPEKDQLEKISRKKAILEEIEDLE 194
[Close]
BLAST of mRNA_H-paniculata_contig5438.12888.1 vs. uniprot
Match: A0A2T7PAM5_POMCA (Mago-bind domain-containing protein n=1 Tax=Pomacea canaliculata TaxID=400727 RepID=A0A2T7PAM5_POMCA)

HSP 1 Score: 102 bits (254), Expect = 1.170e-20
Identity = 74/189 (39.15%), Postives = 117/189 (61.90%), Query Frame = 3 
Query:  147 NGDVVIPATQRPDGTWRKERKLKTGYIPQEEVARFETKGTQNQKYLANRL--PPGMAPEPEKPKQQTA--------ASKKNAARAAQRKAKRAAEKTMDGEAGVADAAGALAELTVSGGGKESGXXXXXXNGSGVVDVAKKVKALHKKIRQVEELEAKVAAGQVQ-PTDEQRQKIARKPALLAELAELE 680
            +G+++IPA+QRPDGTWRK R++K GYIPQEEV  FE+KGTQ   +L +R   P G++PE  +  +QT         A   + ++AA++ AKR  +K  D ++ V      + ++T++     S             D+AKK+K L KK++Q+EELE K+ +G+++ P  +Q +KI+RK A+L E+ +LE
Sbjct:   73 SGELIIPASQRPDGTWRKARRVKDGYIPQEEVPIFESKGTQ---WLKSRPTHPIGLSPEDVEKMEQTKKMLADPKPAQPMHTSKAAKKNAKRKEKKRQDAKSSVTKC---IEQVTITAKSCSSNPESEDLK----PDLAKKLKNLKKKLKQIEELENKIKSGELKNPEKDQLEKISRKKAILEEIEDLE 251
[Close]
BLAST of mRNA_H-paniculata_contig5438.12888.1 vs. uniprot
Match: A0A8C4AAD5_9TELE (PYM homolog 1, exon junction complex associated factor n=2 Tax=Denticeps clupeoides TaxID=299321 RepID=A0A8C4AAD5_9TELE)

HSP 1 Score: 99.8 bits (247), Expect = 1.600e-20
Identity = 78/189 (41.27%), Postives = 107/189 (56.61%), Query Frame = 3 
Query:  132 AIVNENGDVVIPATQRPDGTWRKERKLKTGYIPQEEVARFETKGTQNQKYLANRLPPGMAPEPEKPKQQTAASKKNA-----ARAAQRKAKRAAEKTMDGEAGVADAAGALAELTVSGGGKESGXXXXXXNGSGVVDVAKKVKALHKKIRQVEELEAKVAAGQVQ-PTDEQRQKIARKPALLAELAELE 680
            A V +     I ATQRPDGTWRK R++K GY+PQEEV  +E K  +  K   + LPPGM+PE +  KQ  AA + +A     +++A+R  KR  ++   G   +A    A  +L++       G            + AKKVK L KK+RQVEEL+ KV AG++Q P+ EQR K+ R  AL  EL +LE
Sbjct:    4 AYVTDESGKYIAATQRPDGTWRKPRRVKEGYVPQEEVPVYENKYVKFFKSKPD-LPPGMSPE-DAAKQPAAAGQGDADAGGLSKSARRNMKRREKRKQQGPTDMAALRDAACQLSIGEDAAAGG------------EKAKKVKGLKKKLRQVEELQQKVDAGEIQNPSQEQRDKLGRAAALRLELQQLE 178
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BLAST of mRNA_H-paniculata_contig5438.12888.1 vs. uniprot
Match: A0A7M7RH58_STRPU (Mago-bind domain-containing protein n=1 Tax=Strongylocentrotus purpuratus TaxID=7668 RepID=A0A7M7RH58_STRPU)

HSP 1 Score: 97.8 bits (242), Expect = 1.040e-19
Identity = 73/185 (39.46%), Postives = 108/185 (58.38%), Query Frame = 3 
Query:  162 IPATQRPDGTWRKERKLKTGYIPQEEVARFETKGTQNQKYLAN--RLPPGMAPEPEKPKQQTAASKKNAARAAQRKAKRAAEKTMDGEAG---------VADAAGALAELTVSGGGKESGXXXXXXNGSGVVDVAKKVKALHKKIRQVEELEAKVAAGQV-QPTDEQRQKIARKPALLAELAELE 680
            +PATQRPDGTWRK R+++ GY+PQEEV  +E+KG Q   ++++  RLPPG+  +P   K     SK+  ++A+++            + G         V      + E++VSGG + +           V D  K++K L KKIRQ+EELEAK+A+G+V QP+ EQ +KI+RK A   EL+ LE
Sbjct:   18 LPATQRPDGTWRKPRRVRPGYVPQEEVPLYESKGKQ---WVSSKPRLPPGVYEDPAPAKVHVEESKQQLSKASKKNEXXXXXXXXXXDEGESAQVQNGDVEQLRKGVQEVSVSGGAESA---------PAVQDPQKRIKNLKKKIRQIEELEAKIASGEVAQPSKEQLEKISRKDAFEEELSTLE 190
[Close]
BLAST of mRNA_H-paniculata_contig5438.12888.1 vs. uniprot
Match: A0A6P4Y4X9_BRABE (partner of Y14 and mago-like n=3 Tax=Branchiostoma TaxID=7737 RepID=A0A6P4Y4X9_BRABE)

HSP 1 Score: 95.5 bits (236), Expect = 7.640e-19
Identity = 71/187 (37.97%), Postives = 106/187 (56.68%), Query Frame = 3 
Query:  150 GDVVIPATQRPDGTWRKERKLKTGYIPQEEVARFETKGTQNQKYLANRLPPGMAPEPEKPKQQTAASKKNAARAAQRKAKRAAEKTMD---------GEAGVADAAGALAELTVSGGGKESGXXXXXXNGSGVVDVAKKVKALHKKIRQVEELEAKVAAGQV-QPTDEQRQKIARKPALLAELAELE 680
            G+  IPA+QRPDGTWRK R++K GY+PQEEV  +E+KGTQ  K     LPPG  P+PE+ ++ T+   K A  +      +AA+K             + GV      + ++ +S   +++         S   + AKK+K L KK+RQ+EEL+AK+ +G++ +P   Q  KI RK  +L E+ ELE
Sbjct:   16 GEKFIPASQRPDGTWRKARRVKQGYVPQEEVPVYESKGTQWMKSKPT-LPPGFHPDPEEQEKPTSEEDKYAGMS------KAAKKXXXXXXXXXXXXSDGGVGPITQGVEQVNLSNQSQQAKINNGQSQDS-TAEPAKKLKNLKKKLRQIEELQAKIESGEIAKPDKTQLDKIERKSDILKEIRELE 194
[Close]
BLAST of mRNA_H-paniculata_contig5438.12888.1 vs. uniprot
Match: A0A1S3K099_LINUN (partner of Y14 and mago n=1 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3K099_LINUN)

HSP 1 Score: 95.1 bits (235), Expect = 1.290e-18
Identity = 68/187 (36.36%), Postives = 107/187 (57.22%), Query Frame = 3 
Query:  129 GAIVNENGDVVIPATQRPDGTWRKERKLKTGYIPQEEVARFETKGTQNQKYLANR--LPPGMAPEPEKPKQQTAASKKNAARAAQRKAKRAAEKTMDGEAGVADAAGALAELTVSGGGKESGXXXXXXNGSGVVDVAKKVKALHKKIRQVEELEAKVAAGQV-QPTDEQRQKIARKPALLAELAELE 680
            G + +E G++ IPA++RPDGTWRK R++K GY+PQEEV  +E+KGTQ   ++ N+  LPPG+  EP+       +   N   A      ++A+K           AG +  L+ S    +             VD AK++K L KKI+Q+E+L+A++ +G + +P  +Q +KI+RK  +L E+ ELE
Sbjct:   27 GVVRDEEGNMFIPASRRPDGTWRKARRVKDGYVPQEEVPVYESKGTQ---FVKNKPTLPPGLFVEPD-------SKHNNPGSAGIPGLSKSAKKNXXXXXXXXXEAGDVTSLSSSLQETKLNDKEKDAKPEVKVDPAKRIKTLKKKIKQIEDLQARIDSGDLKEPDKDQLEKISRKQQILTEIEELE 203
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BLAST of mRNA_H-paniculata_contig5438.12888.1 vs. uniprot
Match: UPI001BB237CF (partner of Y14 and mago-like n=1 Tax=Lytechinus variegatus TaxID=7654 RepID=UPI001BB237CF)

HSP 1 Score: 94.4 bits (233), Expect = 2.320e-18
Identity = 83/200 (41.50%), Postives = 112/200 (56.00%), Query Frame = 3 
Query:  108 MAKSVPIGAIVNENGDVVIPATQRPDGTWRKERKLKTGYIPQEEVARFETKGTQ--NQKYLANRLPPGMAPEPEKPKQQTAASKKNAARAAQRKAK------RAAEKTMDGEAGVADAAGALAELTVSGGGKESGXXXXXXNGSGVVDVAKKVKALHKKIRQVEELEAKVAAGQV-QPTDEQRQKIARKPALLAELAELE 680
            MA +       +E+G   +PATQRPDGTWRK R++K GYIPQEEV  +E+KG Q  N K    RLPPG+  +P   K + + +   AA+                 +  +G+  V      + E++V GGG +S           V D  K++K L KKIRQ+EELEAK+A+G+V QP+ EQ +KIARK AL  EL  LE
Sbjct:   20 MASAAKENVETDESGQY-LPATQRPDGTWRKPRRVKPGYIPQEEVPLYESKGKQWMNSK---PRLPPGVYEDPAPAKVEESKALTKAAKXXXXXXXXXXXXXNEVGQVQNGD--VEQLRKGVQEVSV-GGGADSAPV--------VQDPQKRIKNLKKKIRQIEELEAKIASGEVAQPSKEQLEKIARKEALEDELDSLE 204
[Close]
BLAST of mRNA_H-paniculata_contig5438.12888.1 vs. uniprot
Match: A0A7J7FJZ9_DICBM (Mago-bind domain-containing protein n=5 Tax=Boreoeutheria TaxID=1437010 RepID=A0A7J7FJZ9_DICBM)

HSP 1 Score: 94.0 bits (232), Expect = 3.020e-18
Identity = 78/205 (38.05%), Postives = 110/205 (53.66%), Query Frame = 3 
Query:  135 IVNENGDVVIPATQRPDGTWRKERKLKTGYIPQEEVARFETKGTQNQKYLANR--LPPGMAPE------PEKPKQQTAASKKNAARAAQRKAKRAAEKTMDGEAGVADAAGALAELTVSGGGKESGXXXXXXNGS--------------GVVDVAKKVKALHKKIRQVEELEAKVAAGQV-QPTDEQRQKIARKPALLAELAELE 680
            + +E G   I +TQRPDGTWRK+R++K GY+PQEEV  +E K     K+  ++  LPPG++PE      P KP+       K A R  +RK KR  ++    E G A+A     +    G   E+        GS                 + AKK+K L KK+RQVEEL+ ++ AG+V QP+ EQ +K+AR+ AL  EL +LE
Sbjct:    6 VTDETGGKYIASTQRPDGTWRKQRRVKEGYVPQEEVPVYENKYV---KFFKSKPELPPGLSPEATAPVTPSKPEGGEPGLSKTAKRNLKRKEKRRQQQ----EKGEAEALSRTLDKVSLG---ETAQPPSAQQGSRAAPPAASEQPDSAATTEKAKKIKNLKKKLRQVEELQQRIQAGEVGQPSKEQLEKLARRRALEEELEDLE 200
[Close]
BLAST of mRNA_H-paniculata_contig5438.12888.1 vs. uniprot
Match: A0A1S3FPB8_DIPOR (partner of Y14 and mago isoform X4 n=3 Tax=Dipodomys TaxID=10016 RepID=A0A1S3FPB8_DIPOR)

HSP 1 Score: 92.0 bits (227), Expect = 1.340e-17
Identity = 75/202 (37.13%), Postives = 110/202 (54.46%), Query Frame = 3 
Query:  135 IVNENGDVVIPATQRPDGTWRKERKLKTGYIPQEEVARFETKGTQNQKYLANR--LPPGMAPE------PEKPKQQTAASKKNAARAAQRKAKRAAEKTMDGEAGVADAAGALAELTVSGGGKE-----------SGXXXXXXNGSGVVDVAKKVKALHKKIRQVEELEAKVAAGQV-QPTDEQRQKIARKPALLAELAELE 680
            + +E G   I +TQRPDGTWRK+R++K GY+PQEEV  +E K     K+  ++  LPPG++PE      P +P+       K A R  +RK KR  ++    E G A+A     E    G   +                   + +   + AKK+K+L KK+RQVEEL+ ++ AG+V QP+ EQ +K+AR+ AL  EL +LE
Sbjct:    6 VTDETGGKYIASTQRPDGTWRKQRRVKEGYVPQEEVPVYENKYV---KFFKSKPELPPGLSPEATAPVTPSRPEGGEPGLSKTAKRNLKRKEKRRQQQ----EKGEAEALSRTLEKVSLGETVQLPSALQITQAAPTAACDPPDSAATTEKAKKIKSLKKKLRQVEELQQRIQAGEVSQPSKEQLEKLARRRALEEELEDLE 200
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5438.12888.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FZH2_ECTSI1.650e-5259.31Mago-bind domain-containing protein n=2 Tax=Ectoca... [more]
UPI000D7366023.140e-2137.75partner of Y14 and mago-like n=1 Tax=Pomacea canal... [more]
A0A2T7PAM5_POMCA1.170e-2039.15Mago-bind domain-containing protein n=1 Tax=Pomace... [more]
A0A8C4AAD5_9TELE1.600e-2041.27PYM homolog 1, exon junction complex associated fa... [more]
A0A7M7RH58_STRPU1.040e-1939.46Mago-bind domain-containing protein n=1 Tax=Strong... [more]
A0A6P4Y4X9_BRABE7.640e-1937.97partner of Y14 and mago-like n=3 Tax=Branchiostoma... [more]
A0A1S3K099_LINUN1.290e-1836.36partner of Y14 and mago n=1 Tax=Lingula unguis Tax... [more]
UPI001BB237CF2.320e-1841.50partner of Y14 and mago-like n=1 Tax=Lytechinus va... [more]
A0A7J7FJZ9_DICBM3.020e-1838.05Mago-bind domain-containing protein n=5 Tax=Boreoe... [more]
A0A1S3FPB8_DIPOR1.340e-1737.13partner of Y14 and mago isoform X4 n=3 Tax=Dipodom... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5438contigH-paniculata_contig5438:7312..12801 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score192.6
Seed ortholog evalue1.7e-46
Seed eggNOG ortholog2880.D7FZH2
Preferred nameWIBG
KEGG koko:K14294
KEGG Pathwayko03013,ko03015,map03013,map03015
Hectar predicted targeting categoryother localisation
GOsGO:0000184,GO:0000956,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005829,GO:0006139,GO:0006401,GO:0006402,GO:0006417,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010629,GO:0016043,GO:0016070,GO:0016071,GO:0019222,GO:0019439,GO:0022411,GO:0030054,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031981,GO:0032268,GO:0032270,GO:0032984,GO:0032991,GO:0034248,GO:0034250,GO:0034641,GO:0034655,GO:0035145,GO:0043021,GO:0043022,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044877,GO:0045727,GO:0046483,GO:0046700,GO:0048518,GO:0048519,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0060255,GO:0065007,GO:0070013,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:1901360,GO:1901361,GO:1901363,GO:1901575,GO:1903259,GO:1990448,GO:2000112
EggNOG free text desc.exon-exon junction complex disassembly
EggNOG OGsKOG4325@1,KOG4325@2759
Ec32 ortholog descriptionExon junction complex, Pym
Ec32 orthologEc-23_002860.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019
Exons4
Model size1971
Cds size579
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5438.12888.1prot_H-paniculata_contig5438.12888.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5438 7419..11516 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930561.6022816-UTR-H-paniculata_contig5438:7311..74181622930561.6022816-UTR-H-paniculata_contig5438:7311..7418Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5438 7312..7418 +
1691481349.1725507-UTR-H-paniculata_contig5438:7311..74181691481349.1725507-UTR-H-paniculata_contig5438:7311..7418Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5438 7312..7418 +
1622930561.7910912-UTR-H-paniculata_contig5438:11516..128011622930561.7910912-UTR-H-paniculata_contig5438:11516..12801Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5438 11517..12801 +
1691481349.2304413-UTR-H-paniculata_contig5438:11516..128011691481349.2304413-UTR-H-paniculata_contig5438:11516..12801Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5438 11517..12801 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930561.6197875-CDS-H-paniculata_contig5438:7418..75801622930561.6197875-CDS-H-paniculata_contig5438:7418..7580Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5438 7419..7580 +
1691481349.1858795-CDS-H-paniculata_contig5438:7418..75801691481349.1858795-CDS-H-paniculata_contig5438:7418..7580Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5438 7419..7580 +
1622930561.7018511-CDS-H-paniculata_contig5438:9053..93231622930561.7018511-CDS-H-paniculata_contig5438:9053..9323Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5438 9054..9323 +
1691481349.1975362-CDS-H-paniculata_contig5438:9053..93231691481349.1975362-CDS-H-paniculata_contig5438:9053..9323Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5438 9054..9323 +
1622930561.7177706-CDS-H-paniculata_contig5438:9930..100651622930561.7177706-CDS-H-paniculata_contig5438:9930..10065Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5438 9931..10065 +
1691481349.2077665-CDS-H-paniculata_contig5438:9930..100651691481349.2077665-CDS-H-paniculata_contig5438:9930..10065Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5438 9931..10065 +
1622930561.778484-CDS-H-paniculata_contig5438:11504..115161622930561.778484-CDS-H-paniculata_contig5438:11504..11516Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5438 11505..11516 +
1691481349.2194533-CDS-H-paniculata_contig5438:11504..115161691481349.2194533-CDS-H-paniculata_contig5438:11504..11516Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5438 11505..11516 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5438.12888.1

>prot_H-paniculata_contig5438.12888.1 ID=prot_H-paniculata_contig5438.12888.1|Name=mRNA_H-paniculata_contig5438.12888.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=193bp
MAKSVPIGAIVNENGDVVIPATQRPDGTWRKERKLKTGYIPQEEVARFET
KGTQNQKYLANRLPPGMAPEPEKPKQQTAASKKNAARAAQRKAKRAAEKT
MDGEAGVADAAGALAELTVSGGGKESGGGGEGGNGSGVVDVAKKVKALHK
KIRQVEELEAKVAAGQVQPTDEQRQKIARKPALLAELAELEG*
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mRNA from alignment at H-paniculata_contig5438:7312..12801+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5438.12888.1 ID=mRNA_H-paniculata_contig5438.12888.1|Name=mRNA_H-paniculata_contig5438.12888.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5490bp|location=Sequence derived from alignment at H-paniculata_contig5438:7312..12801+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GATGCTTGTCCAGTGTGTCCGCATCTACACGTGAGCTTACTCTTTGCAAC
CGACAATTTACACCGAGGGAGAGCTGCGCGCGGTGTCCATCTTCCTTTAA
GTGATCCATGGCGAAATCCGTGCCCATCGGCGCTATCGTGAACGAGAACG
GAGATGTTGTCATCCCGGCGACACAGCGGCCGGATGGCACTTGGCGCAAG
GAGCGAAAGCTAAAGACGGGCTACATCCCCCAGGAGGAGGTTGCTCGGTT
CGAGACGAAAGGCACACAGGTGAGAAATGGCGTTTTTTAGGACTTCTTAT
GGAGAGGTATTGGCGGGATACAGACTGTTTTGGATGCTTGAGAAAAGTCC
GTGTATACAGGCCGAAACAACACAGCGCAATTAGCTCTAGTGGGGGGTGG
TGTTCCAGACAATCGCCTTTTTTTACCTGCACACCGGGGACAGTTTACAG
TATTGTAGTTTAAACATTTGAAAAGAGGTTACTTGTGTCTGTCTACCTGA
CTGGAGGGTGCAGTCGGAGATGAGAGCGATTATCCCATGTAAGTAACCGC
AGCACAGGACGTGTTTCTCGTAGTTTCGCGGGAATGCTGGAAAAGCTGAC
TGTGCGCATATGTCACGGGCCAAGGGCTTCAACAACAGTCTGTTGCAGAT
ACACGCTCTTACGCCACCATCTGTGTGTATACTCCATGTAAATGGCTACT
GTACTCTGTAGCCCTCACTTCGATTTACATAAGCTTCCAGAGAGATGCTT
GCTCCTGTTTTACAGTTTTTGATATAAAAACCTGGCCTGTAGTACATGTA
TATACGCATTTAGTCGCACGCATTGCTCCTGTATCTGTACCGCTGGACCA
TATTTTCACGATGGTCCACCCACCCGCTTACACTAGAGTAGGTGGCCCTA
TTCAAGGTACCCTAGCCGTAGCGGGGAAAAGTTACGTTATTCCTGAAGTA
CCTTATTCATTATCCATATATAAAGTCCCGGTACCTAGTATATGGACAGT
GATTAAGGTGAGCTCTTCTTTAGAACCACTTCAGTCCTTGTCAGTCCCAG
GGGGCTTCATGGGGCGGGGTACCCAACGCTGGGAGTTGCGCGCATTGCCG
GTAAAGGCACATGTGTCAGTTTGAGGATGGTCTAGTGACGTTTGGATTAT
TTCGTGTTCTTAGATAGTCCCTGCAACCGAAGAACACCAAACAGCTACTA
CAAGTTACTGCTGTTGTACGTACTGTAAATACGTACTCCCAAGGGGGAAA
ATCCCGCAAGACCTTGAGTTAATTGCCGAACAAACCTATGATATCACGAT
CACTTTAAAATGGACAAGGCTAAACTGCCCAAAAACAGCATGCGCCCCTC
CCCCACCGTACTAGACTATCACTACACTTTCCTGTGTCACGGGGAAGGTG
CCCTTAGGGTCCCCTCGACGTTTATGATCGGTGGGGGTAACTAGATATGC
TGTTTATATGTGTGCACTTGCATGCTACTCCCGCAGCGCACGGCATGGCG
GGGATCACATCTGCACTCCTGAAAAGGATTGGAAGGTGCCTTATTCGAGG
CACGTGCGGTGAGCAAGTTATCAGACACCCTGTATCGGGGAAATTGGTGT
CATCAGAAAAATGATATCTTATTCACCGGAATACCTTGTACAGGAGGTAC
CTTGTGGATAAGGCCACCTCCTGTACCTACTGACCTACCCAAAAGACCCG
AATCCGCCGAACACCACACACCTTTTCTTCAAATTCCTGCAGAACCAAAA
ATATCTGGCAAATCGACTTCCGCCAGGCATGGCCCCCGAGCCTGAGAAGC
CAAAGCAGCAGACCGCGGCCTCCAAGAAGAACGCAGCTAGGGCCGCCCAG
CGGAAAGCAAAACGAGCGGCTGAGAAGACGATGGACGGGGAAGCGGGGGT
GGCTGATGCTGCGGGAGCTTTGGCGGAGCTCACCGTTTCTGGTGGAGGGA
AGGAGTCCGGTGGCGGCGGCGAGGGTGGAAATGGTAGTGGGGTGGTAGAT
GTCGCGAAGAAGGTGAGGCGGTGTCGACGGGGGTGATTGATGGGTGATAT
TTGGATGCGGTGTTTTGTCTCGCTTGACCTTGTTGTCGAGAGTTCTGGAA
CCTTTTTTTTGCACCCCGCGCTGAAGTAAACTTCTCCCGTCGTTTTTCCC
ACCCAGTGTCATTCTCTACCAAACAAGTTTATGAAGGATCGATGAACCAC
TCGCACACACTCGTGGGTGATTCGTAGAGGCATTTGCACATGTTTACCAG
AAAACCGCTGTTGTTGGGGAGGTTTACATGGGGGCCTACGAATACGAAAA
GGTAATTATTTTAAAGTCGAGAGTTGAGCGCAATAATACGGGGAAAATGA
CCTAAGTAGTAGATTGTAGTGCACTGCGCAAGTTAGACATGTTCCCCCTC
CCTCGGAAAAAACAATTGACCGTTGGAATCGCTCTAATGGGAAGAAAGCC
CTGTCCCCCCGAGGACGCATGGTCATTAGTCTAAAAACTACTGTGTATAG
AATATGAGCTCGCCCTCCTCCCTCCTCCCTCCTCCTCGCCTCCCAAAGCT
TCGATGATTAGCAGGCGTTATTTGTGGTAATATATCGTATATTCTTGTTT
TCAACTGTGGGTACCACAGGTAAAGGCACTACACAAGAAGATCCGACAAG
TGGAGGAGTTGGAGGCTAAGGTGGCGGCGGGGCAGGTGCAGCCAACCGAC
GAACAGCGACAGAAAATTGCGAGAAAGCCGGCATTACTGGCGGAGTTGGC
AGAGGTAACCACCGTCGCGCGAAAACCTTGTAACGTTTGTGGCCGCTGAT
TTGACTCAAGAAGTGAATTCCCGACTCAGTTCGGCGCCACTGGCCACTAA
ACTAAAGTCCTGGCCGATCAGTGGGACTAGATATACAGCATGCACACGCA
TATTTATGCCTTGCATTGTGACGTGCTACCGCATGGGCTGTTGTTCCGTT
GTTGATGATTTTGAGAACAACAAGTCGACTCAGCCCCTGCTAAAGGTTTG
GCAACGGTGGGCATGCCATATCTGCATTCAGTTGGATGCCCAAATGTGTT
TGTTGTTGCATCGGCGTGCAAAGAACGAAATGGTTTCCGGAGCATCGGAG
GATTGAATTCCAGTGTTGTGCAGGTGGACATCCAAGTGACTAGATTTTTT
AGCCCCACTTCGCGGTTGCATTCTGAGGGAGCTTGATGTCTCCATGTTCG
AAATAATGCGCTGCCAATGAATAAGCCAAGGCTTTGCAGACAACGTGTTA
TGTCTGTTTCATCGTGCGAACAGACGCACAATACTCCTGCATGAAGTTTT
CCCTACGAACTATGACATGGTATATAATAATTTTTACAGATGAAGCGTCA
ACCTCTGAATTATTACGTGAATCTATAAAAGTGCGAGGCAATGGTAAAGA
AAGGGGCACACTACAGATATTTCCCGAGTCTGAACAAGGATAGCTGGACT
TTGAGACCGACGAAAAAATTTCAGCGAAAAAAATGTCATGTTGGGAGTAT
ATACGAATTAGGGTTTGAGCTATAGGTTTGGAAGACCGTATGCACAGAGA
GGGTTTGCGTGTCGTTGAGATTTTCGTATTTTGGGGTGATTTGCCATGGA
CAGCAAGGAGCGAGAGAACCAAACTTCGATGAAAGAGGACTTCCTTTGCG
GATCAAAAGAACCTCGTCTCGGTGGAGCTACCTTTCGTTTCCCCCTAGAG
ATGTCACGTGAACCGTAATTGCCGAAGTTTACAGGGTATACCCCCCCCCC
CCGGTGATTTATCATTTTCCAAATCCGATTTTCTCAAAAACACCAACAGT
CTTGACACCTGGAGTTGGGGTCGTTGGAACGTTTCATCCAGTCGTGTCAT
TAGATAGCCATGCCGATCAGACTGTGCAAAATGTTGCTTCTGAAGGAGGA
ATTGTTTTTTCTCGAATAGTTAGGAGGAAACTTGTTGTTTTTTTCTGTGC
AATCGTTCATGATTCATGTACATCCATTTAAAGTAGATCTACATAATTCA
CGCTATAGCCCCGAGGCGAAAAATAGTAGCTCAGAGGTGGAAGCTCCGTT
ATCAGGGATCGCAACAACTGTTATATATGATCTCATTCTTGTGATCGCAT
GATTGTGCGTTTGCATTTCCGCGTCTGTAACTGCGCCCCTAATCCTTCTC
TCCGTCTTCCGCCCGCTCTCTGTTCTGACCACGTGAACAACAGTTGGAGG
GATAGATGACGTCACCGCATCGATGCGCCAGCGTGCACAACCGATGGTTC
CAGGGCTCAAGACGATCTTCTTTCCCTAGTGCTGTACTAGTAAATATTGT
GTGTTTTCCCAGACGGAGCAGTCTAACTCCCATCGGCTTCTAGTAATTGC
CCCAGAAGACCCTGTTGTTTGTATGACTATGATGCTACGCTGAAAGCCCT
CACGAAGAGGTTATTTTTTTGGTTATGCGTGCGCGTACGAGCTCTAGGCA
CCATTTCTAGCATCTGCGAAAGTTGTTAGGTAAAATGATGTCCAGTGGCC
ATCGGAGGGCGAGGTAGTACGCTAGATAAATCTTTATGTTTTAAACGAAG
AACCAAATGGATTTTTAACGCTGTGACTTCGAGAGCTTGAGGTTTTGCGG
CTGTATTGCACATACGTAGGTAAGGATAAAACGCGAAGTGCTTGAGATTG
ATTGATGCATTTGTTGCTTTTGACTATTTGACCAAGAAGAGTATGCAGTT
GGGCAGTTTTGGACGAGCCACACACGACAACCCCGCGAGCGAAGCCCGGT
GCGGGGCTACTGGTTTCGTAATTAATTTCTAAATTCAGGTCGCTGTGCAG
GGGGTTGTGACTCGCCCCCACGGATCTGTCGTGTCTTGTGTGTTGGCAGC
TCCGCCATCTTCCCGCCCCCCCGCCGTCGAATTTGTTGGCTGGGCAAACT
CCGGCTCACATTATTGTGAGCCTTAACCATAGCTTTTGTTTTTGGCTCCA
ACTCATCGTTCTGACCGTTCAGGCCCGCGGTCAGAGAACCTAAGTTTCCC
AATGTTAAACAGTAGGCTTTCCCTGTAGGTGGTGTTGATCCTGTGCGCTC
GTTACATTTTTTATCTTTGCCAGAACACTGAGGCTGCGGGAGACACTGAA
TGCATGGTTTGTTCTGCCCGAGAGCAATGGTATTATTCCGAACTTGAGAA
ACAGATGCTTTACTGTTAATGTATATGTATACTCTCTGGAGCTTTTTTTC
GGTTTTACTGCAGTCCCCTACCCAGCAGTATCTCGTTGTAGTGCCTTTGT
GTGTACCTAATGTACTGGGACCGAGTTGCTGTATGATGTAGGATTGCCTT
CTGGTGCTTGAATATACGCAGCTAAAGAAAATCTAGGAGGCGAGCGGCAG
ATCGTTGCGCAGTGGGCCGATTGTGTGTACGGGAGAAGTTCATCCGATGG
AGAGAGAGTAAACATAATCTTCAACGCAGCGGTACCACGAGCTGTGAGCA
ACTGTGAAAAAAAAAGTGTGCTATTTTTGCCTTGCCCAGC
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Coding sequence (CDS) from alignment at H-paniculata_contig5438:7312..12801+

>mRNA_H-paniculata_contig5438.12888.1 ID=mRNA_H-paniculata_contig5438.12888.1|Name=mRNA_H-paniculata_contig5438.12888.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1158bp|location=Sequence derived from alignment at H-paniculata_contig5438:7312..12801+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCGAAATCCGTGCCCATCGGCGCTATCGTGAACGAGAACGGAGATGT
TGTCATCCCGGCGACACAGCGGCCGGATGGCACTTGGCGCAAGGAGCGAA
AGCTAAAGACGGGCTACATCCCCCAGGAGGAGGTTGCTCGGTTCGAGACG
AAAGGCACACAGATGGCGAAATCCGTGCCCATCGGCGCTATCGTGAACGA
GAACGGAGATGTTGTCATCCCGGCGACACAGCGGCCGGATGGCACTTGGC
GCAAGGAGCGAAAGCTAAAGACGGGCTACATCCCCCAGGAGGAGGTTGCT
CGGTTCGAGACGAAAGGCACACAGAACCAAAAATATCTGGCAAATCGACT
TCCGCCAGGCATGGCCCCCGAGCCTGAGAAGCCAAAGCAGCAGACCGCGG
CCTCCAAGAAGAACGCAGCTAGGGCCGCCCAGCGGAAAGCAAAACGAGCG
GCTGAGAAGACGATGGACGGGGAAGCGGGGGTGGCTGATGCTGCGGGAGC
TTTGGCGGAGCTCACCGTTTCTGGTGGAGGGAAGGAGTCCGGTGGCGGCG
GCGAGGGTGGAAATGGTAGTGGGGTGGTAGATGTCGCGAAGAAGAACCAA
AAATATCTGGCAAATCGACTTCCGCCAGGCATGGCCCCCGAGCCTGAGAA
GCCAAAGCAGCAGACCGCGGCCTCCAAGAAGAACGCAGCTAGGGCCGCCC
AGCGGAAAGCAAAACGAGCGGCTGAGAAGACGATGGACGGGGAAGCGGGG
GTGGCTGATGCTGCGGGAGCTTTGGCGGAGCTCACCGTTTCTGGTGGAGG
GAAGGAGTCCGGTGGCGGCGGCGAGGGTGGAAATGGTAGTGGGGTGGTAG
ATGTCGCGAAGAAGGTAAAGGCACTACACAAGAAGATCCGACAAGTGGAG
GAGTTGGAGGCTAAGGTGGCGGCGGGGCAGGTGCAGCCAACCGACGAACA
GCGACAGAAAATTGCGAGAAAGCCGGCATTACTGGCGGAGTTGGCAGAGG
TAAAGGCACTACACAAGAAGATCCGACAAGTGGAGGAGTTGGAGGCTAAG
GTGGCGGCGGGGCAGGTGCAGCCAACCGACGAACAGCGACAGAAAATTGC
GAGAAAGCCGGCATTACTGGCGGAGTTGGCAGAGTTGGAGGGATAGTTGG
AGGGATAG
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