mRNA_H-paniculata_contig54379.12886.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig54379.12886.1
Unique NamemRNA_H-paniculata_contig54379.12886.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig54379.12886.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig54379contigH-paniculata_contig54379:80..430 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size351
Cds size351
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930561.489965-CDS-H-paniculata_contig54379:79..4301622930561.489965-CDS-H-paniculata_contig54379:79..430Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig54379 80..430 -
1691481349.138984-CDS-H-paniculata_contig54379:79..4301691481349.138984-CDS-H-paniculata_contig54379:79..430Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig54379 80..430 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig54379.12886.1prot_H-paniculata_contig54379.12886.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig54379 80..430 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig54379.12886.1

>prot_H-paniculata_contig54379.12886.1 ID=prot_H-paniculata_contig54379.12886.1|Name=mRNA_H-paniculata_contig54379.12886.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=117bp
MHPPSHSRPDQACDYSGVGMPEAGIPNLLYEKCFSSTVDLIDVGKLDDTE
DGECGLPVALTNQNPTINNDNTWVADSGASNHMTNNLSKMHDLRKPVAGE
DVVLLGDGSIMVVDFVG
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mRNA from alignment at H-paniculata_contig54379:80..430-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig54379.12886.1 ID=mRNA_H-paniculata_contig54379.12886.1|Name=mRNA_H-paniculata_contig54379.12886.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=351bp|location=Sequence derived from alignment at H-paniculata_contig54379:80..430- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCATCCACCTTCCCATTCAAGGCCGGATCAGGCGTGTGATTATTCTGG
TGTGGGTATGCCTGAGGCTGGTATCCCGAATCTTCTGTACGAAAAATGTT
TTTCGAGTACTGTCGATTTGATTGATGTTGGGAAGTTGGATGATACAGAG
GATGGAGAGTGCGGTTTGCCTGTAGCCTTGACAAATCAAAATCCAACTAT
TAACAATGACAATACGTGGGTAGCTGATTCTGGTGCAAGTAACCACATGA
CGAACAATCTTTCAAAAATGCATGACCTTCGCAAGCCGGTGGCAGGAGAA
GATGTGGTACTGTTGGGGGATGGATCGATTATGGTGGTAGATTTTGTGGG
A
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Coding sequence (CDS) from alignment at H-paniculata_contig54379:80..430-

>mRNA_H-paniculata_contig54379.12886.1 ID=mRNA_H-paniculata_contig54379.12886.1|Name=mRNA_H-paniculata_contig54379.12886.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=702bp|location=Sequence derived from alignment at H-paniculata_contig54379:80..430- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCATCCACCTTCCCATTCAAGGCCGGATCAGGCGTGTGATTATTCTGG
TGTGGGTATGCCTGAGGCTGGTATCCCGAATCTTCTGTACGAAAAATGTT
TTTCGAGTACTGTCGATTTGATTGATGTTGGGAAGTTGGATGATACAGAG
GATGGAGAGTGCGGTTTGCCTGTAGCCTTGACAAATCAAAATCCAACTAT
TAACAATGACAATACGTGGGTAGCTGATTCTGGTGCAAGTAACCACATGA
CGAACAATCTTTCAAAAATGCATGACCTTCGCAAGCCGGTGGCAGGAGAA
GATGTGGTACTGTTGGGGGATGGATCGATTATGGTGGTAGATTTTGTGGG
AATGCATCCACCTTCCCATTCAAGGCCGGATCAGGCGTGTGATTATTCTG
GTGTGGGTATGCCTGAGGCTGGTATCCCGAATCTTCTGTACGAAAAATGT
TTTTCGAGTACTGTCGATTTGATTGATGTTGGGAAGTTGGATGATACAGA
GGATGGAGAGTGCGGTTTGCCTGTAGCCTTGACAAATCAAAATCCAACTA
TTAACAATGACAATACGTGGGTAGCTGATTCTGGTGCAAGTAACCACATG
ACGAACAATCTTTCAAAAATGCATGACCTTCGCAAGCCGGTGGCAGGAGA
AGATGTGGTACTGTTGGGGGATGGATCGATTATGGTGGTAGATTTTGTGG
GA
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