mRNA_H-paniculata_contig12005.1286.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig12005.1286.1
Unique NamemRNA_H-paniculata_contig12005.1286.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig12005.1286.1 vs. uniprot
Match: K0SVI8_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SVI8_THAOC)

HSP 1 Score: 75.9 bits (185), Expect = 4.440e-11
Identity = 75/279 (26.88%), Postives = 118/279 (42.29%), Query Frame = 2
Query:  302 DVVVFNTGLHPVGSFKRFEEINRAAVTALDDMGY----KGQL------IFRNAIPGHTNCQEEARATSGDSTGGKTAKQPFFPKDGNFSMFEAFNDPQWSSYHWDDMSEYNQIAKKIWSEAGAT----IIDGTEALRLRPDGHMKPPKDCLHYSLPGPPDLWSLLLFNTLLGR---IS*GFPFFM-------HLGHGLVCHYSLGFSILGYR------STVRITLRGSESSYGRRGSI*AALFN*GAALRRGSSICFYIC-CPPLDRNPISILRGLYTF 1045
            D+VVFNTG+H        + IN A  T  +  G     KG        I R  +PGH +C       +   T           ++ N+S F         +Y W  M   N++ +  +S+  +T    ++D  + +  RPDGH     DC+HY LPGPPD+ S +L +TL+ R   +    P F              +C+ S+  S+  Y       S    TL      +GR G++   LF+ G  L R  ++ F +    P+ R  +  ++GL+ F
Sbjct:  841 DIVVFNTGVHYRKDQALMKSINMAISTLENWQGICRLKKGSRRRWCLPILRTTVPGHPHCSNYTVPFNDLPT------MEHRVQNANYSAFGP-------NYFWWKMKGQNRLVEDAFSQRSSTLDYEVLDAYDVMMRRPDGHQGG-HDCVHYCLPGPPDVLSRMLLHTLVRRGRVLGHSSPTFFVSEIDQKEKSQYFICNRSI--SLPTYHDAEPEPSYKNDTLLLGGDKFGRMGNLWRVLFH-GLDLARDRNLSFAVIRTSPVGRQIMHDVQGLFPF 1102          
BLAST of mRNA_H-paniculata_contig12005.1286.1 vs. uniprot
Match: A0A7S4M8K7_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4M8K7_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 3.170e-8
Identity = 54/182 (29.67%), Postives = 82/182 (45.05%), Query Frame = 2
Query:  305 VVVFNTGLHPVGSFKRFEEINRAAVTALDDMGYKGQ-----LIFRNAIPGHTNCQEEARATSGDSTGGKTAKQPFFPKDGNFSMFEAFNDPQWSS----YHWDD---MSEYNQIAKKIWSE-------AGATIIDGTEALRLRPDGHM------KPPK--DCLHYSLPGPPDLWSLLLFNTL 769
            +++ NTG H  G FK +  +N+A    L D+  K       ++ R   PGH  C++       ++      ++ F          EA    +W      Y WD    M+E+ + A +++++       +   ++D +    LRPDGHM       P K  DCLHYSLPGP D WS LLF  L
Sbjct:  255 LLIVNTGAHH-GKFKDYTYVNKAIDDFLSDVKTKFHRPKDIVVLRTTPPGHPACEKMDHPFENEAE-----REEFITSLTKDDTPEA---QEWKKKLKLYQWDKYEKMNEHLREAVRMYNKDDSHSGPSNVHLLDVSHMTNLRPDGHMGGIDNKNPNKKVDCLHYSLPGPIDWWSNLLFANL 427          
BLAST of mRNA_H-paniculata_contig12005.1286.1 vs. uniprot
Match: UPI001D1A5573 (protein trichome birefringence-like 19 n=1 Tax=Hordeum vulgare subsp. vulgare TaxID=112509 RepID=UPI001D1A5573)

HSP 1 Score: 66.2 bits (160), Expect = 3.870e-8
Identity = 85/312 (27.24%), Postives = 114/312 (36.54%), Query Frame = 2
Query:    2 RSILFVGDSTQNQMFESLVGQVNGHVSLSPTAPFLPSSRVAICPNDPLTGRQIEAAFVRNDH-----------LTVDNPDPGTAPLNVMQAHCQAKDRGIRYPWVQFLDEFDVVVF---------------------NTGLHPVGSFKRFEEINRAAV-TALDDM----GYKGQLIFRNAIPGHTNCQEEARATSGDSTGGKTAKQPFFPKDGNFSMFEAFNDPQWSSYHWDDMSEYNQIA-KKIWSEAGATI--IDGTEALRLRPDGHMK----PPK---------DCLHYSLPGPPDLWSLLLFNTLLGR 778
            RS+ FVGDS      +SL+        LS  A   P  RV     D +TGR +   F    H           L   N       L +   H    D      W   + +FD +V                      N G H   +      + RAA  TAL  +    G++G  + R   P H    E    T GD    +  ++    +D   + F A           D + E    A ++ W   GA +  +D TEA+ LRPDGH      PP          DCLH+ LPGP DLW+ LLF+ L  R
Sbjct:  255 RSMAFVGDSLARNHLKSLL------CILSQVAE--PVERVTTTETD-VTGRAVRRDFHYGSHGFNVSLFWSPFLVKANLSNAEQGLGLWDVHLDTADAR----WAAHIADFDYIVLSGTNWFFRPSVYYEGGRAVGRNGGAHHNATEAPVSGVVRAAFRTALGAIAAREGFRGDAVVRTVTPAHFENGEWD--TGGDCVRTRPLRRGERARDAVVAEFRAAQV--------DALRETEAAAAQRKWKRGGAELRLLDITEAMELRPDGHPSRYGHPPGGSVEGSFVVDCLHWCLPGPIDLWTELLFHMLAAR 543          
BLAST of mRNA_H-paniculata_contig12005.1286.1 vs. uniprot
Match: A0A0E0CQZ9_9ORYZ (PMR5N domain-containing protein n=1 Tax=Oryza meridionalis TaxID=40149 RepID=A0A0E0CQZ9_9ORYZ)

HSP 1 Score: 64.7 bits (156), Expect = 1.240e-7
Identity = 82/310 (26.45%), Postives = 119/310 (38.39%), Query Frame = 2
Query:    2 RSILFVGDSTQNQMFESLVGQVNGHVSLSPTAPFLPSSRVAICPNDPLTGRQIEAAFVRNDH-LTVD--------NPDPGTAPLNVMQAHCQAKDRGIRYPWVQFLDEFDVVVF---NTGLHPVGSFKRFEEINRAAV--------------------TALDDMG-----YKGQLIFRNAIPGHTNCQEEARATSGDSTGGKTAK-QPFFPKDGNFSMFEAFNDPQWSSYHWDDMSEYNQIAKKIWSEAGATIIDGTEALRLRPDGHMK----PPK---------DCLHYSLPGPPDLWSLLLFNTLLGR 778
            +S+ FVGDS     F+SL+        LS  A   P   V   P   +TGR +   F+ + H  T            +   A L +   H    D      W   + EFD VV    N  L P   ++    + R +                     TAL  +      ++G+ I R+  P H    E        +TGG   + +PF   +      EA    ++ +   D + E     ++   E    ++D TEA+ LRPDGH      PP          DCLH+ LPGP DLWS LLF+ L+ +
Sbjct:  287 KSMAFVGDSLARNHFKSLL------CLLSKVAQ--PVEVVGAAPEIDVTGRAVRRDFLYDSHGFTASLFWSPFLIKANLANATLGLWDLHLDTADAR----WAAHVAEFDYVVLSDTNWFLRPSVYYEGGRAVGRNSAAPVTNATEIAVPRAVRAAFRTALGALAAAPGTFRGKAILRSVTPAHFENGEW-------NTGGDCVRTRPFRRDERALGAVEA----EYRAVQVDAVREAEAAVRRNGGEL--RLLDITEAMDLRPDGHPSRYGHPPGGSVEGSFVVDCLHWCLPGPVDLWSELLFHMLVDQ 571          
BLAST of mRNA_H-paniculata_contig12005.1286.1 vs. uniprot
Match: A0A7S4SCW6_9STRA (Hypothetical protein n=4 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4SCW6_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 1.550e-7
Identity = 57/228 (25.00%), Postives = 93/228 (40.79%), Query Frame = 2
Query:  173 VRNDHLTVDNPDPGTAPLNVMQAHCQAKDRGIRYPWVQFLDEFD---VVVFNTGLHPVGSFKRFEEINRAAVTALDDMGYKGQ--LIFRNAIPGHTNCQEEARATSGDSTGGKTAKQPFFPKDGNFSMFEAFNDPQWSS-YHWDDMSEYNQIAKKIW----------SEAGATIIDGTEALRLRPDGHMKP------------PKDCLHYSLPGPPDLWSLLLFNTLL 772
            +R+D + ++N +P          H         +PW +    ++   + + NTG H     ++F+      V  +D   Y+ +  +++R  +PGH NC E               ++PF       + FE +   + +  Y W+    YN    K +          S A   ++D       RPDGH+               KDCLHYSLPGPPD W+ L++N LL
Sbjct:  718 IRSDRI-IENGEPVDEEKEFKNCHDYC------HPWSERYKSYNGDTLFIVNTGPH-FQLHRQFQAAFDEFVAKIDSY-YRPRDVILWRTTVPGHPNCNETID------------QKPF-------NSFEEYAATEVTDFYSWNKFVGYNDYVTKAFDMRKREVPGPSRARMELLDVYPMTVQRPDGHVSSGECPECPGAKGFAKDCLHYSLPGPPDWWNHLMYNHLL 917          
BLAST of mRNA_H-paniculata_contig12005.1286.1 vs. uniprot
Match: K0TQQ8_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TQQ8_THAOC)

HSP 1 Score: 63.9 bits (154), Expect = 2.200e-7
Identity = 47/176 (26.70%), Postives = 78/176 (44.32%), Query Frame = 2
Query:  302 DVVVFNTGLHPVGSFKRFEEINRAAVTALDDM-GYKGQL-------------IFRNAIPGHTNCQEEARATSGDSTGGKTAKQPFFPKDGNFSMFEAFNDPQWSSYHWDDMSEYNQIAKKIW---SEAGATIIDGTEALRLRPDGHMKPPKDCLHYSLPGPPDLWSLLLFNTLLGR 778
            D+VVFNTG+H    +++ E + R+  T +  +  ++G               I R  +PGH +C       +   T           ++ N+S F         +Y W  M   N++ +  +   S     ++D  + +  RPDGH     DC+HY LPGPPD+ S +L + L+ R
Sbjct:  414 DIVVFNTGVH----YRKDEALMRSINTTISTLENWQGICRLRKDSRRRWCLPILRTTVPGHPHCSNYTVPFNDLPT------MEHRVQNANYSAFGP-------NYFWWKMKGQNRLVEDAFRGSSTLDYVVLDAYDVMMRRPDGHQGG-HDCVHYCLPGPPDVLSRMLLHALVRR 571          
BLAST of mRNA_H-paniculata_contig12005.1286.1 vs. uniprot
Match: Q0DXX0_ORYSJ (Os02g0729100 protein n=2 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q0DXX0_ORYSJ)

HSP 1 Score: 63.5 bits (153), Expect = 2.230e-7
Identity = 82/310 (26.45%), Postives = 117/310 (37.74%), Query Frame = 2
Query:    2 RSILFVGDSTQNQMFESLVGQVNGHVSLSPTAPFLPSSRVAICPNDPLTGRQIEAAFVRNDH-LTVD--------NPDPGTAPLNVMQAHCQAKDRGIRYPWVQFLDEFDVVVFN--------------------TGLHPVGSFKRF---EEINRAAVTALDDMG-----YKGQLIFRNAIPGHTNCQEEARATSGDSTGGKTAK-QPFFPKDGNFSMFEAFNDPQWSSYHWDDMSEYNQIAKKIWSEAGATIIDGTEALRLRPDGHMK----PPK---------DCLHYSLPGPPDLWSLLLFNTLLGR 778
            +S+ FVGDS     F+SL+        LS  A   P   V   P   +TGR +   F  + H  T            +   A L +   H    D      W   + EFD VV +                     G  PV +         +  A  TAL  +      ++G+ I R+  P H    E        +TGG   + +PF   +      EA    ++ +   D + E     ++   E    ++D TEA+ LRPDGH      PP          DCLH+ LPGP DLWS LLF+ L+ +
Sbjct:  132 KSMAFVGDSLARNHFKSLL------CLLSKVAQ--PVELVGAAPEIDVTGRAVRRDFRYDSHGFTASLFWSPFLVKANLANATLGLWDLHLDTADAR----WAAHVAEFDYVVLSDTNWFLRPSVYYEGGRAVGRNGAAPVTNATEIAVPRAVRAAFSTALGALAAAPGTFRGKAILRSVTPAHFENGEW-------NTGGDCVRTRPFRRDERALGAVEA----EYLAVQVDAVREAEAAVRRNGGEL--RLLDITEAMDLRPDGHPSRYGHPPGGSVEGSFVVDCLHWCLPGPIDLWSELLFHMLVDQ 416          
BLAST of mRNA_H-paniculata_contig12005.1286.1 vs. uniprot
Match: A0A0E0GCN6_ORYNI (PMR5N domain-containing protein n=6 Tax=Oryza TaxID=4527 RepID=A0A0E0GCN6_ORYNI)

HSP 1 Score: 63.2 bits (152), Expect = 3.620e-7
Identity = 82/310 (26.45%), Postives = 117/310 (37.74%), Query Frame = 2
Query:    2 RSILFVGDSTQNQMFESLVGQVNGHVSLSPTAPFLPSSRVAICPNDPLTGRQIEAAFVRNDH-LTVD--------NPDPGTAPLNVMQAHCQAKDRGIRYPWVQFLDEFDVVVFN--------------------TGLHPVGSFKRF---EEINRAAVTALDDMG-----YKGQLIFRNAIPGHTNCQEEARATSGDSTGGKTAK-QPFFPKDGNFSMFEAFNDPQWSSYHWDDMSEYNQIAKKIWSEAGATIIDGTEALRLRPDGHMK----PPK---------DCLHYSLPGPPDLWSLLLFNTLLGR 778
            +S+ FVGDS     F+SL+        LS  A   P   V   P   +TGR +   F  + H  T            +   A L +   H    D      W   + EFD VV +                     G  PV +         +  A  TAL  +      ++G+ I R+  P H    E        +TGG   + +PF   +      EA    ++ +   D + E     ++   E    ++D TEA+ LRPDGH      PP          DCLH+ LPGP DLWS LLF+ L+ +
Sbjct:  232 KSMAFVGDSLARNHFKSLL------CLLSKVAQ--PVELVGAAPEIDVTGRAVRRDFRYDSHGFTASLFWSPFLVKANLANATLGLWDLHLDTADAR----WAAHVAEFDYVVLSDTNWFLRPSVYYEGGRAVGRNGAAPVTNATEIAVPRAVRAAFRTALGALAAAPGTFRGKAILRSVTPAHFENGEW-------NTGGDCVRTRPFRRDERALGAVEA----EYLAVQVDAVREAEAAVRRNGGEL--RLLDITEAMDLRPDGHPSRYGHPPGGSVEGSFVVDCLHWCLPGPIDLWSELLFHMLVDQ 516          
BLAST of mRNA_H-paniculata_contig12005.1286.1 vs. uniprot
Match: A0A0D3FA12_9ORYZ (Mediator of RNA polymerase II transcription subunit 11 n=3 Tax=Oryza TaxID=4527 RepID=A0A0D3FA12_9ORYZ)

HSP 1 Score: 63.2 bits (152), Expect = 4.230e-7
Identity = 82/310 (26.45%), Postives = 117/310 (37.74%), Query Frame = 2
Query:    2 RSILFVGDSTQNQMFESLVGQVNGHVSLSPTAPFLPSSRVAICPNDPLTGRQIEAAFVRNDH-LTVD--------NPDPGTAPLNVMQAHCQAKDRGIRYPWVQFLDEFDVVVFN--------------------TGLHPVGSFKRF---EEINRAAVTALDDMG-----YKGQLIFRNAIPGHTNCQEEARATSGDSTGGKTAK-QPFFPKDGNFSMFEAFNDPQWSSYHWDDMSEYNQIAKKIWSEAGATIIDGTEALRLRPDGHMK----PPK---------DCLHYSLPGPPDLWSLLLFNTLLGR 778
            +S+ FVGDS     F+SL+        LS  A   P   V   P   +TGR +   F  + H  T            +   A L +   H    D      W   + EFD VV +                     G  PV +         +  A  TAL  +      ++G+ I R+  P H    E        +TGG   + +PF   +      EA    ++ +   D + E     ++   E    ++D TEA+ LRPDGH      PP          DCLH+ LPGP DLWS LLF+ L+ +
Sbjct:  384 KSMAFVGDSLARNHFKSLL------CLLSKVAQ--PVELVGAAPEIDVTGRAVRRDFRYDSHGFTASLFWSPFLVKANLANATLGLWDLHLDTADAR----WAAHVAEFDYVVLSDTNWFLRPSVYYEGGRAVGRNGAAPVTNATEIAVPRAVRAAFRTALGALAAAPGTFRGKAILRSVTPAHFENGEW-------NTGGDCVRTRPFRRDERALGAVEA----EYLAVQVDAVREAEAAVRRNGGEL--RLLDITEAMDLRPDGHPSRYGHPPGGSVEGSFVVDCLHWCLPGPIDLWSELLFHMLVDQ 668          
BLAST of mRNA_H-paniculata_contig12005.1286.1 vs. uniprot
Match: UPI001F5D0BED (protein trichome birefringence-like 21 n=1 Tax=Lolium rigidum TaxID=89674 RepID=UPI001F5D0BED)

HSP 1 Score: 62.4 bits (150), Expect = 5.360e-7
Identity = 88/306 (28.76%), Postives = 120/306 (39.22%), Query Frame = 2
Query:    2 RSILFVGDSTQNQMFESLVGQVNGHVSLSPTAPFLPSSRVAICPNDPLTGRQIEAAFVRNDHLTVDNP--DPGTAPLNVMQAHCQAKDRGIRYP---WVQFLDEFDVVVFN--------------------TGLHPVGSFKRFEEIN-----RAAV-TALDDM----GYKGQLIFRNAIPGHTNCQEEARATSGDSTGGKTAK-QPFFPKDGNFSMFEAFNDPQWSSYHWDDMSEYNQIAKKIWSEAGATIIDGTEALRLRPDGHMK----PPK---------DCLHYSLPGPPDLWSLLLFNTLL 772
            +SI FVGDS     F+SL+        LS  A  LP+  V   P   +TGR +   +    H    +    P     N+  A     D  +  P   W   L +FD VV +                     G    G      E+      RAA  TAL  +    G++G+ I R   P H           G +TGG   + +P+   D     FEA    ++ S   + + E     +   +E    ++D TEA+ LRPDGH      PP          DCLH+ LPGP DLWS LLF+ LL
Sbjct:  136 KSIAFVGDSLARNHFKSLL------CILSTVA--LPAE-VGTDPEIDVTGRAVRRDYYYGSHDFTASLFWSPFLVKANISNATLGMWDVHLDEPDGRWAAHLADFDHVVLSGTNWFLRQSVYYKGGRAVACNGGASCGVGGNLTELAVPLALRAAFRTALGAVASHKGFRGKAILRTLTPAHFE-------NGGWNTGGDCVRTRPYRRGDRTLGAFEA----EYRSAQVEALRETKAGLRTNGAEL--LLLDITEAMDLRPDGHPSRYGHPPGGSVEGDFVVDCLHWCLPGPIDLWSELLFHMLL 419          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12005.1286.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 23
Match NameE-valueIdentityDescription
K0SVI8_THAOC4.440e-1126.88Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A7S4M8K7_9STRA3.170e-829.67Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
UPI001D1A55733.870e-827.24protein trichome birefringence-like 19 n=1 Tax=Hor... [more]
A0A0E0CQZ9_9ORYZ1.240e-726.45PMR5N domain-containing protein n=1 Tax=Oryza meri... [more]
A0A7S4SCW6_9STRA1.550e-725.00Hypothetical protein n=4 Tax=Ditylum brightwellii ... [more]
K0TQQ8_THAOC2.200e-726.70Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
Q0DXX0_ORYSJ2.230e-726.45Os02g0729100 protein n=2 Tax=Oryza sativa subsp. j... [more]
A0A0E0GCN6_ORYNI3.620e-726.45PMR5N domain-containing protein n=6 Tax=Oryza TaxI... [more]
A0A0D3FA12_9ORYZ4.230e-726.45Mediator of RNA polymerase II transcription subuni... [more]
UPI001F5D0BED5.360e-728.76protein trichome birefringence-like 21 n=1 Tax=Lol... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig12005contigH-paniculata_contig12005:1392..6594 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score89.7
Seed ortholog evalue2e-15
Seed eggNOG ortholog5286.M7WYV5
Hectar predicted targeting categoryother localisation
EggNOG OGs29J3F@1,2RSBH@2759,3AD8Z@33154,3P97F@4751,3V2WR@5204
Best tax levelBasidiomycota
Best eggNOG OGNA|NA|NA
Exons7
Model size1162
Cds size747
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928917.0938866-UTR-H-paniculata_contig12005:1391..17661622928917.0938866-UTR-H-paniculata_contig12005:1391..1766Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12005 1392..1766 -
1691480666.9408972-UTR-H-paniculata_contig12005:1391..17661691480666.9408972-UTR-H-paniculata_contig12005:1391..1766Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12005 1392..1766 -
1622928917.2667406-UTR-H-paniculata_contig12005:6554..65941622928917.2667406-UTR-H-paniculata_contig12005:6554..6594Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12005 6555..6594 -
1691480667.025819-UTR-H-paniculata_contig12005:6554..65941691480667.025819-UTR-H-paniculata_contig12005:6554..6594Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12005 6555..6594 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928917.1381788-CDS-H-paniculata_contig12005:1766..19461622928917.1381788-CDS-H-paniculata_contig12005:1766..1946Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12005 1767..1946 -
1691480666.9507256-CDS-H-paniculata_contig12005:1766..19461691480666.9507256-CDS-H-paniculata_contig12005:1766..1946Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12005 1767..1946 -
1622928917.1556349-CDS-H-paniculata_contig12005:2628..27811622928917.1556349-CDS-H-paniculata_contig12005:2628..2781Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12005 2629..2781 -
1691480666.9589498-CDS-H-paniculata_contig12005:2628..27811691480666.9589498-CDS-H-paniculata_contig12005:2628..2781Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12005 2629..2781 -
1622928917.1694443-CDS-H-paniculata_contig12005:3748..38511622928917.1694443-CDS-H-paniculata_contig12005:3748..3851Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12005 3749..3851 -
1691480666.967757-CDS-H-paniculata_contig12005:3748..38511691480666.967757-CDS-H-paniculata_contig12005:3748..3851Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12005 3749..3851 -
1622928917.1946604-CDS-H-paniculata_contig12005:5165..52781622928917.1946604-CDS-H-paniculata_contig12005:5165..5278Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12005 5166..5278 -
1691480666.9770994-CDS-H-paniculata_contig12005:5165..52781691480666.9770994-CDS-H-paniculata_contig12005:5165..5278Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12005 5166..5278 -
1622928917.2115433-CDS-H-paniculata_contig12005:5480..56041622928917.2115433-CDS-H-paniculata_contig12005:5480..5604Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12005 5481..5604 -
1691480666.988293-CDS-H-paniculata_contig12005:5480..56041691480666.988293-CDS-H-paniculata_contig12005:5480..5604Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12005 5481..5604 -
1622928917.2281532-CDS-H-paniculata_contig12005:5986..60361622928917.2281532-CDS-H-paniculata_contig12005:5986..6036Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12005 5987..6036 -
1691480667.0033698-CDS-H-paniculata_contig12005:5986..60361691480667.0033698-CDS-H-paniculata_contig12005:5986..6036Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12005 5987..6036 -
1622928917.249236-CDS-H-paniculata_contig12005:6530..65541622928917.249236-CDS-H-paniculata_contig12005:6530..6554Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12005 6531..6554 -
1691480667.01395-CDS-H-paniculata_contig12005:6530..65541691480667.01395-CDS-H-paniculata_contig12005:6530..6554Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12005 6531..6554 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig12005.1286.1prot_H-paniculata_contig12005.1286.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig12005 1767..6554 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig12005.1286.1

>prot_H-paniculata_contig12005.1286.1 ID=prot_H-paniculata_contig12005.1286.1|Name=mRNA_H-paniculata_contig12005.1286.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=249bp
MFESLVGQVNGHVSLSPTAPFLPSSRVAICPNDPLTGRQIEAAFVRNDHL
TVDNPDPGTAPLNVMQAHCQAKDRGIRYPWVQFLDEFDVVVFNTGLHPVG
SFKRFEEINRAAVTALDDMGYKGQLIFRNAIPGHTNCQEEARATSGDSTG
GKTAKQPFFPKDGNFSMFEAFNDPQWSSYHWDDMSEYNQIAKKIWSEAGA
TIIDGTEALRLRPDGHMKPPKDCLHYSLPGPPDLWSLLLFNTLLGRIS*
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mRNA from alignment at H-paniculata_contig12005:1392..6594-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig12005.1286.1 ID=mRNA_H-paniculata_contig12005.1286.1|Name=mRNA_H-paniculata_contig12005.1286.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5203bp|location=Sequence derived from alignment at H-paniculata_contig12005:1392..6594- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGATCTATTCTTTTTGTCGGAGATTCCACGCAGAACCAGATGTTTGAAT CCTTGGTGGGTCAGGTATGTTTATCACGAAGCCACTTGCGGTACCGTGCG CTGTGAGTTATGTGTAGCCATTCCAGGGTGGGCGGGTTTAAGAAAAAAAT ATCTGGAGGGCTTCACATTCTTGGACACTGAAACATAGGTGGTAGTATCC AGGCAATAACGTATGTACCGTAAGCGTGGGCGACACGCACCGATCTCCAC AGAAAAAGAACCTCTTAGCACACTTCCTTTTGCATATCACGTATGATCAT GTAAGGTATCTGCGCGCTTGGTCTTTTTATTGACCTTGCACTTGATCTCG GTCTTGGTTCTATCCCTTATCGCGAAATACACGGTGATAAGAGTGATCTT CAACAACGAATGAAACCACTGCCTTCCCTCCCAAGAGGTCGTGTGTGAAT CTTTCCCGTTTCACACTTTCTTCCCCTCCCCTCCTTGCCCCTCCAGTTGT ATTGAATCGAATCCGGGCACCTGTTATTTTTCGCTCGTTCGTTCATTTGT CCGCCTAGGTCAATGGTCATGTTTCTCTGTCACCAACTGCCCCATTTCTG CCATCAAGGTGAGATGCCACGGGCAATAAGCTCCTTCTTGACGAGCAGAC AGAGGGGGGGAACTAAATCAGCGAACGATTATACGTACGTACCTATTTGA CCGGTAATTTGGGACTACGCGTCGAACCTACATATGCGACAGCACCACTC GGCCGCCTCAGCCATATCTTTCTAGTTCTCTTGGCCGGAACTCTAAAGCA TACTCTTGGTGATCGATCACTTGTCATAGCCAGGTGTACTGTGTACAGCA CTCAGCAGTAATGCTGGACCCCAGATTAGTCGAATGGCCTCGAGCCTCTT GAATACCTTTGCTGAGTAGTATGATCGTTAACACGGAGCTTCCCCCGCTG ATTGGACCCTAATCACGTGATTTTCTTCATGGTGTGACAGCCGGGTGGCT ATATGCCCAAACGATCCGCTGACCGGACGTCAGATTGAGGCGGCTTTCGT TAGGAACGACCACTTGACAGTCGATAACCCCGATCCCGGTACTGCTCCCC TCAACGTTATGCAGGTGAAGTGGGACAGGGTAGGGCTGGGCGAAAGGCTC AATTGCGGGCACGAGTGCGCACTCTAGCGCGTCCATATATCGCATGACAC TGGTCTACATCGGTTTTCGTCTTGAAAGGAGAACGGGTACTGTACATATC ATACATTGCGTAACGGACTGTGCCTGCGTATCTCTGTTGCTGCGCAACTC AATCTTCACTTTGCAGGCGCACTGCCAGGCGAAGGATCGCGGAATTCGCT ACCCTTGGGTGCAATTTCTTGATGAATTTGACGTGGTTGTGTTCAACACA GGGCTACATCCCGTCGGCAGCTTCAAAAGGTTAATATATCGCACCAAAAT ATCGGTACTCAGAAGTATGCTGGCGGGGACGTGATGGTGGATAGTGCAAT GGTTATGCCTTGTGGGGTCGTGTTAACGGTGATATGCTTGCTGTGTGAGA ACTTGCGTGAACATGACCATTTCAAAAGGTTTAATAGTCTGTTGTAGCTG ACGACACTATCTTTTGGTCAGAATATGTTATTCGTGAAGATGAGAACTAA TCGTTTTTCTTAGAACGGGGGCTAGTTTCTAGTTTGCCGCAGTTTTGTCC TGAAACATGAAAGATTCAGCCAAAACACCCCGAACGTAGGTTGGAGCCCT CGCTCGTTGGAACAGTATGCCGTTTTTCATTTTCTAATTGGACAACATCC GGCGAAGTTGCAACAAGCAGCCATTTTTTATAACTTTGTAATTAAATAAA ACGCGACGTATTTGCTGAATGGTGGATTTTTGTAACTTCGCAGGATCTTG TCCGATTAGAAAATGAAATGCGGTATGCTATTCCAACGAGTGAGGGCTTT AACTCATATTGGGGACGTTTTGGTTGAATCGTTCGTCTTGCAGGTCAAAA CCGCGGAAACCTAGAAAAAGCTTCCGTTCTGAAAAAATAATTGATTCTGA TCTTCACGTAAATATTATTTTCAGAGATATACTTCTTGTCTCTGCTGGGT CAACTAACCACCCACTCGCCGACACTTTTACACTGCTAATTTTCGGCTCC GTTTCGAACATGCTCGTTCTTATTCATGTAGCACCCTTCACAATACAGTG GGTGGCCCTTTTTAAGGCCGGTATGTGTCAGTCTAAAAACCCGACGTTGT AGACCGATCGGCCATATATGGTTTCGGCCCACTTGAAGGCAGACCGCCCT TGCAGTCGGCCAAAACCATCATAAGGCCTCGCACATGGTCCGTTACAGAC GCCCATTCGCTGTACGCATGGTTCAGGTGTTCAAATGATCAGTGGTATGT CCCCAGTGCTAGATCCTCATCCAAGCAAAACATGAAGGCCGCAGCAGGGT AGTGATAACCTGTGTTGTTGTATTTGTTGGTGTAACATTGATGGTCGGTT GTAGTGCTTGTTACTGCTATCAGTGCTTGACTACCATTGGCAAGGTCGGA CGGTGGAGGACCAACAGAACCCCATACATTTCTACCGTTATGCAACCCTA GTAGCACGGAAAAATATGTATTTCTCATGTACGACCCATCGACGACGTGA ATTCCAAATCAACAAACTAAACCCACAGCCAATCCTGGATACGTCCCGTT GCCTGAATGAAATATCAACGCGCTTCCATCTATGATGATGCAGGTTTGAG GAGATAAACCGCGCAGCAGTCACAGCCCTTGACGACATGGGGTACAAGGG CCAATTGATATTCCGCAATGCTATACCGGGCCACACCAACTGTCAGGTGC AGTGCCTAATGATCGAAAAGCACGTGCGCACCAAAGGGGCACATTAGAAA CCGCTGGCACGAACTGACCATATATTCATTAGTACTCCGAATAGGCTCTC CATCTACTGCTGGTAACATAGCCTCATCCCCGTTTGCTAATCGCCGCGAC CACCATGGTGGTGATGACATACGCATTCACGGCCCCGCGCAAGGGGTGGG TGGTATTAGTTGGAACGTCCGCTGCTGAAGTGCCCTGTCATTTCCCCGGG AAGATGCTTGAGATGGACAGCCCTACCCGACACATTCTGCTGCTGCAGAT CAAAGATGGAATCGATAGTGCAGCTGAAAACCAGCAACGGAAATACCGTT GTGTAGCATATTTTGGAATTATCCGATGGGGTTGAAAGTGAGAGGAGAAG GAGGTGGACCCGGTTATGCAAAACAGTCGTCTGGGTATGGAGCAAAACCC CCATCCCAAGATATACGGTTTTGTGATCTCACTTTATCCAATAGAGAATT TGCCAACATAGCCAGGACGTCTAGAATTGCGGGAGTCAGCGGAGGATAGT AGCGGGACTCTGTGGGTGTTTGTTTTTTCCATTTCCAAGCAATTATCCGA GTGAATTGTCCTGGATCGAAATAGTGTGGCCGCCCCCATTCTCTCACTCT TCCTCTCTCTCTTCCTCTCTCTTCACTCTTCTTATTTTCTCTATTTTGCC CACATAAGCATCGCATCGAAATCATCTGTCTTTTCTGGTATGTACAACTG GGACTATACGTTTGTTTAGGTATACGAATGAGGCACGAGTAGTAGTGAAA TCTAAGTCTATATAAATGTAGACATTGAAAGCGATATACAACAATCCAAT CCTGGACCGGAGTGAGAGACAAGAACCGACTCTTTGCAAAGAATGTATAC CTAATACATATACCCCTTTCTCAACAACCTCCCACACCCTCATATGCCTG TTCAACAACGAAGGAGGAGGCTAGGGCTACCAGCGGGGATTCAACAGGTG GTAAAACGGCGAAACAACCTTTCTTTCCCAAGGATGGAAACTTTTCCATG TTTGAAGCCTTCAACGACCCGCAGTGGAGTAGCTATCATTGGGATGATAT GTCCGAATATAACCAGGTGCGATGCGTGAGTGAGCTTTACTGCCTTACAG CACAAGGCATAACTTGGGGGATTGGATATTGATATTTCTTTCTTTAGTTT CATTTCTCGCACTTCCTTGTGAAACTTGCCAAGAAAACGCTGCTCAAATG GGGGCCGTTAAACGTATCCGTTATCCATGTCATGGAATAATATATATATA TATATCGATCTACAGTAAAAAACATATTGGTGAAATGGGGACCCAAGTTT GAGATGGGGACCCTGAGTTATATTGGAAATAGGATGTATCCTGAAGATCC GAAATTGATTTTCAGGAAAAGGCCTATTTCCAATATATCCCAGGGTCCCC ATCTCAAAGTTGGGTCCCCATTTCACCAATATGCTGTTAGTACAGATCAA TATACAAACGGTGAGGCTTACACTGAAGAAGCGTTTCTAAGGTGTTGATG TGTACTGTACGTTACAGCGTTGGGAGGACGGTCAGGCGAGGTGATGGGAG GGACCAGTACTGCATTGCTTAAATTGCCACGTTATAGGGTAGGTCAGTTG AACGATTGCACATGCATCTTGTCGGAGATTTGGGGCGCAATCGTTGTAGA TCCCTGTGTACGGATAGTGCGTATGACCTCACGTTGTTTTGATCTTAGTT GCACCACTTCCCTCCTACTATTTCAACACCATTCTTGTGGTCGAGCAGAT AGCAAAGAAGATCTGGTCCGAGGCGGGTGCGACAATTATCGATGGCACGG AAGCACTACGGCTCAGGCCAGATGGCCATATGAAACCCCCGAAGGACTGT CTTCACTATTCCTTGCCAGGGCCTCCTGATTTGTGGTCGCTTCTGTTGTT CAACACCTTACTGGGTCGCATTTCGTGAGGTTTTCCGTTTTTCATGCATC TCGGACATGGATTAGTTTGTCATTACAGCTTGGGGTTTAGTATTTTGGGC TATCGTTCGACAGTAAGGATAACACTGCGCGGTTCGGAGTCGTCATATGG TAGGAGGGGGAGTATCTGAGCTGCTTTGTTTAACTAAGGCGCCGCTTTGA GAAGAGGATCGAGTATTTGTTTTTACATTTGTTGCCCCCCATTAGACAGA AATCCCATTTCAATTCTTCGTGGACTTTACACCTTTGGGGAAGCACAAAC GCATGCAATTGACATGGTTTTGATTCGCGTTATTGTTGTGTCGCTTTTGC GAAACGGCCTTCGTTAAACAATTGACCCCGCCTCTACCGTAGCATGACTT CCT
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Coding sequence (CDS) from alignment at H-paniculata_contig12005:1392..6594-

>mRNA_H-paniculata_contig12005.1286.1 ID=mRNA_H-paniculata_contig12005.1286.1|Name=mRNA_H-paniculata_contig12005.1286.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1494bp|location=Sequence derived from alignment at H-paniculata_contig12005:1392..6594- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTTGAATCCTTGGTGGGTCAGATGTTTGAATCCTTGGTGGGTCAGGT
CAATGGTCATGTTTCTCTGTCACCAACTGCCCCATTTCTGCCATCAAGGT
CAATGGTCATGTTTCTCTGTCACCAACTGCCCCATTTCTGCCATCAAGCC
GGGTGGCTATATGCCCAAACGATCCGCTGACCGGACGTCAGATTGAGGCG
GCTTTCGTTAGGAACGACCACTTGACAGTCGATAACCCCGATCCCGGTAC
TGCTCCCCTCAACGTTATGCAGCCGGGTGGCTATATGCCCAAACGATCCG
CTGACCGGACGTCAGATTGAGGCGGCTTTCGTTAGGAACGACCACTTGAC
AGTCGATAACCCCGATCCCGGTACTGCTCCCCTCAACGTTATGCAGGCGC
ACTGCCAGGCGAAGGATCGCGGAATTCGCTACCCTTGGGTGCAATTTCTT
GATGAATTTGACGTGGTTGTGTTCAACACAGGGCTACATCCCGTCGGCAG
CTTCAAAAGGCGCACTGCCAGGCGAAGGATCGCGGAATTCGCTACCCTTG
GGTGCAATTTCTTGATGAATTTGACGTGGTTGTGTTCAACACAGGGCTAC
ATCCCGTCGGCAGCTTCAAAAGGTTTGAGGAGATAAACCGCGCAGCAGTC
ACAGCCCTTGACGACATGGGGTACAAGGGCCAATTGATATTCCGCAATGC
TATACCGGGCCACACCAACTGTCAGGTTTGAGGAGATAAACCGCGCAGCA
GTCACAGCCCTTGACGACATGGGGTACAAGGGCCAATTGATATTCCGCAA
TGCTATACCGGGCCACACCAACTGTCAGGAGGAGGCTAGGGCTACCAGCG
GGGATTCAACAGGTGGTAAAACGGCGAAACAACCTTTCTTTCCCAAGGAT
GGAAACTTTTCCATGTTTGAAGCCTTCAACGACCCGCAGTGGAGTAGCTA
TCATTGGGATGATATGTCCGAATATAACCAGGAGGAGGCTAGGGCTACCA
GCGGGGATTCAACAGGTGGTAAAACGGCGAAACAACCTTTCTTTCCCAAG
GATGGAAACTTTTCCATGTTTGAAGCCTTCAACGACCCGCAGTGGAGTAG
CTATCATTGGGATGATATGTCCGAATATAACCAGATAGCAAAGAAGATCT
GGTCCGAGGCGGGTGCGACAATTATCGATGGCACGGAAGCACTACGGCTC
AGGCCAGATGGCCATATGAAACCCCCGAAGGACTGTCTTCACTATTCCTT
GCCAGGGCCTCCTGATTTGTGGTCGCTTCTGTTGTTCAACACCTTACTGG
GTCGCATTTCGTGAATAGCAAAGAAGATCTGGTCCGAGGCGGGTGCGACA
ATTATCGATGGCACGGAAGCACTACGGCTCAGGCCAGATGGCCATATGAA
ACCCCCGAAGGACTGTCTTCACTATTCCTTGCCAGGGCCTCCTGATTTGT
GGTCGCTTCTGTTGTTCAACACCTTACTGGGTCGCATTTCGTGA
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