mRNA_H-paniculata_contig54113.12856.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-paniculata_contig54113.12856.1
Unique Name	mRNA_H-paniculata_contig54113.12856.1
Type	mRNA
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)

Homology

[Close]

BLAST of mRNA_H-paniculata_contig54113.12856.1 vs. uniprot
Match: A0A4P8JA69_9PHAE (Ribulose bisphosphate carboxylase large chain (Fragment) n=18 Tax=Sphacelariales TaxID=27945 RepID=A0A4P8JA69_9PHAE)

HSP 1 Score: 712 bits (1837), Expect = 1.260e-258
Identity = 352/361 (97.51%), Postives = 358/361 (99.17%), Query Frame = 1

Query:    1 LVGITPQPGVDPVEAAAAVAGESSTATWTVVWTDLLTACDIYRAKAYRVDPVPGTSDQFFAYVAYECDLFEEGSLANLTASIIGNVFGFKAVKALRLEDMRIPFAYLKTFQGPATGLIVERERLDKFGRPFLGATVKPKLGLSGKNYGRVVYEGLRGGLDFLKDDENINSQPFMRWKERFLYCMEGVNRAAAATGEVKGSYLNVTSATIEQMYERAEFADSVGTVIVMVDLVIGYTAIQTMAIWARKAQMILHLHRAGNSTYARQKNHGINFRVICKWMRMSGVDHIHAGTVVGKLEGDPLMVRGFYNTLLLTELNVNLAEGLFFDMDWASLRKCVPVASGGIHCGQMHQLLYYVGDDVVL 1083
            L  ITPQPGVDPVEAAAAVAGESSTATWTVVWTDLLTACDIYRAKAYRVDPVPGTSDQFFAYVAYECDLFEEGSLANLTASIIGNVFGFKAVKALRLEDMRIP+AYLKTFQGPATGLIVERERLDKFGRPFLGATVKPKLGLSGKNYGRVVYEGLRGGLDFLKDDENINSQPFMRWKERFLYCMEGVNRAAAATGEVKGSYLNVT+AT+EQ+YERAEFA+SVGTVIVMVDLVIGYTAIQTMAIWARKAQMILHLHRAGNSTYARQKNHGINFRVICKWMRMSGVDHIHAGTVVGKLEGDPLMVRGFYNTLLLTEL VNLAEGLFFDMDWASLRKCVPVASGGIHCGQMHQLLYY+GDDVVL
Sbjct:   25 LFRITPQPGVDPVEAAAAVAGESSTATWTVVWTDLLTACDIYRAKAYRVDPVPGTSDQFFAYVAYECDLFEEGSLANLTASIIGNVFGFKAVKALRLEDMRIPYAYLKTFQGPATGLIVERERLDKFGRPFLGATVKPKLGLSGKNYGRVVYEGLRGGLDFLKDDENINSQPFMRWKERFLYCMEGVNRAAAATGEVKGSYLNVTAATMEQIYERAEFAESVGTVIVMVDLVIGYTAIQTMAIWARKAQMILHLHRAGNSTYARQKNHGINFRVICKWMRMSGVDHIHAGTVVGKLEGDPLMVRGFYNTLLLTELKVNLAEGLFFDMDWASLRKCVPVASGGIHCGQMHQLLYYLGDDVVL 385

[Close]

BLAST of mRNA_H-paniculata_contig54113.12856.1 vs. uniprot
Match: I6LAK3_9PHAE (Ribulose bisphosphate carboxylase large chain (Fragment) n=11 Tax=Ochrophyta TaxID=2696291 RepID=I6LAK3_9PHAE)

HSP 1 Score: 703 bits (1814), Expect = 4.360e-255
Identity = 344/361 (95.29%), Postives = 357/361 (98.89%), Query Frame = 1

Query:    1 LVGITPQPGVDPVEAAAAVAGESSTATWTVVWTDLLTACDIYRAKAYRVDPVPGTSDQFFAYVAYECDLFEEGSLANLTASIIGNVFGFKAVKALRLEDMRIPFAYLKTFQGPATGLIVERERLDKFGRPFLGATVKPKLGLSGKNYGRVVYEGLRGGLDFLKDDENINSQPFMRWKERFLYCMEGVNRAAAATGEVKGSYLNVTSATIEQMYERAEFADSVGTVIVMVDLVIGYTAIQTMAIWARKAQMILHLHRAGNSTYARQKNHGINFRVICKWMRMSGVDHIHAGTVVGKLEGDPLMVRGFYNTLLLTELNVNLAEGLFFDMDWASLRKCVPVASGGIHCGQMHQLLYYVGDDVVL 1083
            L  ITPQPGVDPVEAAAAVAGESSTATWTVVWTDLLTACDIYRAKAYRVDPVPGTSDQFFAY+AYECDLFEEGSLANLTASIIGNVFGFKAVKALRLEDMRIP+AYLKTFQGPATG+IVERERLDKFGRPFLGATVKPKLGLSGKNYGRVVYEGLRGGLDFLKDDENINSQPFMRWKER+LYCMEGVNR+AAATGEVKGSYLNVT+ATIEQMYERAE+A+S+GTVIVM+DLVIGYTAIQ+MAIWARKAQMILHLHRAGNSTYARQKNHGINFRVICKWMRMSGVDHIHAGTVVGKLEGDPLMVRGFYNTLLLTEL VNL EGLFFDMDWASLRKCVPVASGGIHCGQMHQLLYY+G+DVVL
Sbjct:   25 LFRITPQPGVDPVEAAAAVAGESSTATWTVVWTDLLTACDIYRAKAYRVDPVPGTSDQFFAYIAYECDLFEEGSLANLTASIIGNVFGFKAVKALRLEDMRIPYAYLKTFQGPATGIIVERERLDKFGRPFLGATVKPKLGLSGKNYGRVVYEGLRGGLDFLKDDENINSQPFMRWKERYLYCMEGVNRSAAATGEVKGSYLNVTAATIEQMYERAEYAESLGTVIVMIDLVIGYTAIQSMAIWARKAQMILHLHRAGNSTYARQKNHGINFRVICKWMRMSGVDHIHAGTVVGKLEGDPLMVRGFYNTLLLTELKVNLLEGLFFDMDWASLRKCVPVASGGIHCGQMHQLLYYLGNDVVL 385

[Close]

BLAST of mRNA_H-paniculata_contig54113.12856.1 vs. uniprot
Match: A0A0F6R4P4_9PHAE (Ribulose bisphosphate carboxylase large chain (Fragment) n=20 Tax=Phaeophyceae TaxID=2870 RepID=A0A0F6R4P4_9PHAE)

HSP 1 Score: 700 bits (1807), Expect = 3.770e-254
Identity = 343/361 (95.01%), Postives = 356/361 (98.61%), Query Frame = 1

Query:    1 LVGITPQPGVDPVEAAAAVAGESSTATWTVVWTDLLTACDIYRAKAYRVDPVPGTSDQFFAYVAYECDLFEEGSLANLTASIIGNVFGFKAVKALRLEDMRIPFAYLKTFQGPATGLIVERERLDKFGRPFLGATVKPKLGLSGKNYGRVVYEGLRGGLDFLKDDENINSQPFMRWKERFLYCMEGVNRAAAATGEVKGSYLNVTSATIEQMYERAEFADSVGTVIVMVDLVIGYTAIQTMAIWARKAQMILHLHRAGNSTYARQKNHGINFRVICKWMRMSGVDHIHAGTVVGKLEGDPLMVRGFYNTLLLTELNVNLAEGLFFDMDWASLRKCVPVASGGIHCGQMHQLLYYVGDDVVL 1083
            L  ITPQPGVDPVEAAAAVAGESSTATWTVVWTDLLTACDIYRAKAYRVDPVPGT+DQFFAY+AYECDLFEEGSLANLTASIIGNVFGFKAVKALRLEDMRIPFAYLKTFQGPATG+IVERERLDKFGRPFLGATVKPKLGLSGKNYGRVVYEGLRGGLDFLKDDENINSQPFMRWKER+LYCMEGVNRAAAATGEVKGSYLNVTSAT+EQMYERA++A S+GTVIVM+DLVIGY+AIQTMAIWARKAQMILHLHRAGNSTYARQKNHGINFRVICKWMRM+GVDHIHAGTVVGKL+GDPLMVRGFYNTLLLTEL VNL EGLFFDMDWASLRKCVPVASGGIHCGQMHQLLYY+GDDVVL
Sbjct:   14 LFRITPQPGVDPVEAAAAVAGESSTATWTVVWTDLLTACDIYRAKAYRVDPVPGTNDQFFAYIAYECDLFEEGSLANLTASIIGNVFGFKAVKALRLEDMRIPFAYLKTFQGPATGMIVERERLDKFGRPFLGATVKPKLGLSGKNYGRVVYEGLRGGLDFLKDDENINSQPFMRWKERYLYCMEGVNRAAAATGEVKGSYLNVTSATMEQMYERADYAYSLGTVIVMIDLVIGYSAIQTMAIWARKAQMILHLHRAGNSTYARQKNHGINFRVICKWMRMAGVDHIHAGTVVGKLKGDPLMVRGFYNTLLLTELKVNLPEGLFFDMDWASLRKCVPVASGGIHCGQMHQLLYYLGDDVVL 374

[Close]

BLAST of mRNA_H-paniculata_contig54113.12856.1 vs. uniprot
Match: L7PGM1_9PHAE (Ribulose bisphosphate carboxylase large chain (Fragment) n=3 Tax=Padina TaxID=157004 RepID=L7PGM1_9PHAE)

HSP 1 Score: 691 bits (1784), Expect = 6.630e-251
Identity = 338/353 (95.75%), Postives = 350/353 (99.15%), Query Frame = 1

Query:   25 GVDPVEAAAAVAGESSTATWTVVWTDLLTACDIYRAKAYRVDPVPGTSDQFFAYVAYECDLFEEGSLANLTASIIGNVFGFKAVKALRLEDMRIPFAYLKTFQGPATGLIVERERLDKFGRPFLGATVKPKLGLSGKNYGRVVYEGLRGGLDFLKDDENINSQPFMRWKERFLYCMEGVNRAAAATGEVKGSYLNVTSATIEQMYERAEFADSVGTVIVMVDLVIGYTAIQTMAIWARKAQMILHLHRAGNSTYARQKNHGINFRVICKWMRMSGVDHIHAGTVVGKLEGDPLMVRGFYNTLLLTELNVNLAEGLFFDMDWASLRKCVPVASGGIHCGQMHQLLYYVGDDVVL 1083
            GVDPVEAAAAVAGESSTATWTVVWTDLLTACDIYRAKAYRVDPVPGT+DQFFAY+AYECDLFEEGSLANLTASIIGNVFGFKAVKALRLEDMRIPFAYLKTFQGPATG+IVERERLDKFGRP LGATVKPKLGLSGKNYGRVVYEGLRGGLDFLKDDENINSQPFMRWKERFLYCMEGVNR+AAATGEVKGSYLNVTS+TIEQMYERAE+AD++G+VIVM+DLVIGYTAIQTMAIWARKAQMILHLHRAGNSTYARQKNHGINFRVICKWMRMSGVDHIHAGTVVGKLEGDPLMV+GFYNTLLLTEL VNLAEGLFFDM WASLRKCVPVASGGIHCGQMHQLLYY+GDDVVL
Sbjct:    1 GVDPVEAAAAVAGESSTATWTVVWTDLLTACDIYRAKAYRVDPVPGTNDQFFAYIAYECDLFEEGSLANLTASIIGNVFGFKAVKALRLEDMRIPFAYLKTFQGPATGVIVERERLDKFGRPLLGATVKPKLGLSGKNYGRVVYEGLRGGLDFLKDDENINSQPFMRWKERFLYCMEGVNRSAAATGEVKGSYLNVTSSTIEQMYERAEYADALGSVIVMIDLVIGYTAIQTMAIWARKAQMILHLHRAGNSTYARQKNHGINFRVICKWMRMSGVDHIHAGTVVGKLEGDPLMVKGFYNTLLLTELKVNLAEGLFFDMSWASLRKCVPVASGGIHCGQMHQLLYYLGDDVVL 353

[Close]

BLAST of mRNA_H-paniculata_contig54113.12856.1 vs. uniprot
Match: A0A678X7I6_9PHAE (Ribulose bisphosphate carboxylase large chain (Fragment) n=17 Tax=Phaeophyceae TaxID=2870 RepID=A0A678X7I6_9PHAE)

HSP 1 Score: 692 bits (1786), Expect = 9.030e-251
Identity = 338/354 (95.48%), Postives = 350/354 (98.87%), Query Frame = 1

Query:   22 PGVDPVEAAAAVAGESSTATWTVVWTDLLTACDIYRAKAYRVDPVPGTSDQFFAYVAYECDLFEEGSLANLTASIIGNVFGFKAVKALRLEDMRIPFAYLKTFQGPATGLIVERERLDKFGRPFLGATVKPKLGLSGKNYGRVVYEGLRGGLDFLKDDENINSQPFMRWKERFLYCMEGVNRAAAATGEVKGSYLNVTSATIEQMYERAEFADSVGTVIVMVDLVIGYTAIQTMAIWARKAQMILHLHRAGNSTYARQKNHGINFRVICKWMRMSGVDHIHAGTVVGKLEGDPLMVRGFYNTLLLTELNVNLAEGLFFDMDWASLRKCVPVASGGIHCGQMHQLLYYVGDDVVL 1083
            PGVDPVEAAAAVAGESSTATWTVVWTDLLTACDIYRAKAYRVDPVPGT+DQFFAYVAYECDLFEEGSLANLTASIIGNVFGFKAVKALRLEDMRIPFAYLKTFQGPATG+IVERERLD FGRP LGATVKPKLGLSGKNYGRVVYEGLRGGLDFLKDDENINSQPFMRWKERFLYCMEGVNRAAAATGEVKGSYLNVT+AT+E MYERA++A+S+GTVIVM+DLV+GYTAIQTMAIWARKAQMILHLHRAGNSTYARQKNHGINFRVICKWMRMSGVDHIHAGTVVGKLEGDPLMVRGFYNTLLLTEL VNLAEG+FFDMDWASLRKCVPVASGGIHCGQMHQLLYY+GDDVVL
Sbjct:    1 PGVDPVEAAAAVAGESSTATWTVVWTDLLTACDIYRAKAYRVDPVPGTNDQFFAYVAYECDLFEEGSLANLTASIIGNVFGFKAVKALRLEDMRIPFAYLKTFQGPATGVIVERERLDTFGRPLLGATVKPKLGLSGKNYGRVVYEGLRGGLDFLKDDENINSQPFMRWKERFLYCMEGVNRAAAATGEVKGSYLNVTAATMENMYERADYAESLGTVIVMIDLVVGYTAIQTMAIWARKAQMILHLHRAGNSTYARQKNHGINFRVICKWMRMSGVDHIHAGTVVGKLEGDPLMVRGFYNTLLLTELKVNLAEGIFFDMDWASLRKCVPVASGGIHCGQMHQLLYYLGDDVVL 354

[Close]

BLAST of mRNA_H-paniculata_contig54113.12856.1 vs. uniprot
Match: A0A0F6R3I4_9PHAE (Ribulose bisphosphate carboxylase large chain (Fragment) n=5 Tax=Phaeophyceae TaxID=2870 RepID=A0A0F6R3I4_9PHAE)

HSP 1 Score: 692 bits (1786), Expect = 1.360e-250
Identity = 338/356 (94.94%), Postives = 351/356 (98.60%), Query Frame = 1

Query:   16 PQPGVDPVEAAAAVAGESSTATWTVVWTDLLTACDIYRAKAYRVDPVPGTSDQFFAYVAYECDLFEEGSLANLTASIIGNVFGFKAVKALRLEDMRIPFAYLKTFQGPATGLIVERERLDKFGRPFLGATVKPKLGLSGKNYGRVVYEGLRGGLDFLKDDENINSQPFMRWKERFLYCMEGVNRAAAATGEVKGSYLNVTSATIEQMYERAEFADSVGTVIVMVDLVIGYTAIQTMAIWARKAQMILHLHRAGNSTYARQKNHGINFRVICKWMRMSGVDHIHAGTVVGKLEGDPLMVRGFYNTLLLTELNVNLAEGLFFDMDWASLRKCVPVASGGIHCGQMHQLLYYVGDDVVL 1083
            PQPGVDPVEAAAAVAGESSTATWTVVWTDLLTACD+YRAKAYRVDPVPGT+DQFFAY+AYECDLFEEGSLANLTASIIGNVFGFKAVKALRLEDMRIPFAYLKTFQGPATG+IVERERLDKFGRP LGATVKPKLGLSGKNYGRVVYEGLRGGLDFLKDDENINSQPFMRWKER+LYCMEGVNRAAAATGEVKGSYLNVT AT+EQMYERA++A S+GTVIVM+DLVIGY+AIQTMAIWARKAQMILHLHRAGNSTYARQKNHGINFRVICKWMRM+GVDHIHAGTVVGKLEGDPLMVRGFYN LLLTEL VNLAEGLFFDMDWASLRKCVPVASGGIHCGQMHQLLYY+GDDVVL
Sbjct:    1 PQPGVDPVEAAAAVAGESSTATWTVVWTDLLTACDVYRAKAYRVDPVPGTNDQFFAYIAYECDLFEEGSLANLTASIIGNVFGFKAVKALRLEDMRIPFAYLKTFQGPATGVIVERERLDKFGRPLLGATVKPKLGLSGKNYGRVVYEGLRGGLDFLKDDENINSQPFMRWKERYLYCMEGVNRAAAATGEVKGSYLNVTCATMEQMYERADYAYSLGTVIVMIDLVIGYSAIQTMAIWARKAQMILHLHRAGNSTYARQKNHGINFRVICKWMRMAGVDHIHAGTVVGKLEGDPLMVRGFYNPLLLTELKVNLAEGLFFDMDWASLRKCVPVASGGIHCGQMHQLLYYLGDDVVL 356

[Close]

BLAST of mRNA_H-paniculata_contig54113.12856.1 vs. uniprot
Match: L7PGP4_9PHAE (Ribulose bisphosphate carboxylase large chain (Fragment) n=4 Tax=Padina stipitata TaxID=1248357 RepID=L7PGP4_9PHAE)

HSP 1 Score: 689 bits (1778), Expect = 5.440e-250
Identity = 340/353 (96.32%), Postives = 348/353 (98.58%), Query Frame = 1

Query:   25 GVDPVEAAAAVAGESSTATWTVVWTDLLTACDIYRAKAYRVDPVPGTSDQFFAYVAYECDLFEEGSLANLTASIIGNVFGFKAVKALRLEDMRIPFAYLKTFQGPATGLIVERERLDKFGRPFLGATVKPKLGLSGKNYGRVVYEGLRGGLDFLKDDENINSQPFMRWKERFLYCMEGVNRAAAATGEVKGSYLNVTSATIEQMYERAEFADSVGTVIVMVDLVIGYTAIQTMAIWARKAQMILHLHRAGNSTYARQKNHGINFRVICKWMRMSGVDHIHAGTVVGKLEGDPLMVRGFYNTLLLTELNVNLAEGLFFDMDWASLRKCVPVASGGIHCGQMHQLLYYVGDDVVL 1083
            GVDPVEAAAAVAGESSTATWTVVWTDLLTACDIYRAKAYRVDPVPGTSDQ FAYVAYECDLFEEGSLANLTASIIGNVFGFKAVKALRLEDMRIPFAYLKTFQGPATG+IVERERLDKFGRP LGATVKPKLGLSGKNYGRVVYEGLRGGLDFLKDDENINSQPFMRWKER+LYCMEGVNRAAAATGEVKGSYLNVTSAT+EQMYERAE+A+ +GTVIVMVDLVIGY+AIQTMAIWARKAQMILHLHRAGNSTYARQKNHGINFRVICKWMRMSGVDHIHAGTVVGKLEGDPLMVRGFYNTLLLTEL VNLAEGLFFDM WASLRKCVPVASGGIHCGQMHQLLYY+GDDVVL
Sbjct:    1 GVDPVEAAAAVAGESSTATWTVVWTDLLTACDIYRAKAYRVDPVPGTSDQVFAYVAYECDLFEEGSLANLTASIIGNVFGFKAVKALRLEDMRIPFAYLKTFQGPATGVIVERERLDKFGRPLLGATVKPKLGLSGKNYGRVVYEGLRGGLDFLKDDENINSQPFMRWKERYLYCMEGVNRAAAATGEVKGSYLNVTSATMEQMYERAEYAEVLGTVIVMVDLVIGYSAIQTMAIWARKAQMILHLHRAGNSTYARQKNHGINFRVICKWMRMSGVDHIHAGTVVGKLEGDPLMVRGFYNTLLLTELKVNLAEGLFFDMSWASLRKCVPVASGGIHCGQMHQLLYYLGDDVVL 353

[Close]

BLAST of mRNA_H-paniculata_contig54113.12856.1 vs. uniprot
Match: L7PGL2_9PHAE (Ribulose bisphosphate carboxylase large chain (Fragment) n=6 Tax=Padina TaxID=157004 RepID=L7PGL2_9PHAE)

HSP 1 Score: 688 bits (1776), Expect = 1.100e-249
Identity = 335/353 (94.90%), Postives = 350/353 (99.15%), Query Frame = 1

Query:   25 GVDPVEAAAAVAGESSTATWTVVWTDLLTACDIYRAKAYRVDPVPGTSDQFFAYVAYECDLFEEGSLANLTASIIGNVFGFKAVKALRLEDMRIPFAYLKTFQGPATGLIVERERLDKFGRPFLGATVKPKLGLSGKNYGRVVYEGLRGGLDFLKDDENINSQPFMRWKERFLYCMEGVNRAAAATGEVKGSYLNVTSATIEQMYERAEFADSVGTVIVMVDLVIGYTAIQTMAIWARKAQMILHLHRAGNSTYARQKNHGINFRVICKWMRMSGVDHIHAGTVVGKLEGDPLMVRGFYNTLLLTELNVNLAEGLFFDMDWASLRKCVPVASGGIHCGQMHQLLYYVGDDVVL 1083
            GVDPVEAAAAVAGESSTATWTVVWTDLLTACD+YRAKAYRVDPVPGT+DQFFAY+AYECDLFEEGSLANLTASIIGNVFGFKAVKALRLEDMRIPFAYLKTFQGPATG+IVERERLDKFGRP LGATVKPKLGLSGKNYGRVVYEGLRGGLDFLKDDENINSQPFMRWKER+LYCMEGVNR+AAA+GEVKGSYLNVT++TIEQMYERAE+AD++G+VIVM+DLVIGYTAIQTMAIWARKAQMILHLHRAGNSTYARQKNHGINFRVICKWMRMSGVDHIHAGTVVGKLEGDPLMVRGFYNTLLLTEL VNLAEGLFFDM WASLRKCVPVASGGIHCGQMHQLLYY+GDDVVL
Sbjct:    1 GVDPVEAAAAVAGESSTATWTVVWTDLLTACDVYRAKAYRVDPVPGTNDQFFAYIAYECDLFEEGSLANLTASIIGNVFGFKAVKALRLEDMRIPFAYLKTFQGPATGVIVERERLDKFGRPLLGATVKPKLGLSGKNYGRVVYEGLRGGLDFLKDDENINSQPFMRWKERYLYCMEGVNRSAAASGEVKGSYLNVTASTIEQMYERAEYADALGSVIVMIDLVIGYTAIQTMAIWARKAQMILHLHRAGNSTYARQKNHGINFRVICKWMRMSGVDHIHAGTVVGKLEGDPLMVRGFYNTLLLTELKVNLAEGLFFDMSWASLRKCVPVASGGIHCGQMHQLLYYLGDDVVL 353

[Close]

BLAST of mRNA_H-paniculata_contig54113.12856.1 vs. uniprot
Match: L7PFE0_9PHAE (Ribulose bisphosphate carboxylase large chain (Fragment) n=2 Tax=Dictyotaceae TaxID=2874 RepID=L7PFE0_9PHAE)

HSP 1 Score: 688 bits (1775), Expect = 1.560e-249
Identity = 336/353 (95.18%), Postives = 349/353 (98.87%), Query Frame = 1

Query:   25 GVDPVEAAAAVAGESSTATWTVVWTDLLTACDIYRAKAYRVDPVPGTSDQFFAYVAYECDLFEEGSLANLTASIIGNVFGFKAVKALRLEDMRIPFAYLKTFQGPATGLIVERERLDKFGRPFLGATVKPKLGLSGKNYGRVVYEGLRGGLDFLKDDENINSQPFMRWKERFLYCMEGVNRAAAATGEVKGSYLNVTSATIEQMYERAEFADSVGTVIVMVDLVIGYTAIQTMAIWARKAQMILHLHRAGNSTYARQKNHGINFRVICKWMRMSGVDHIHAGTVVGKLEGDPLMVRGFYNTLLLTELNVNLAEGLFFDMDWASLRKCVPVASGGIHCGQMHQLLYYVGDDVVL 1083
            GVDPVEAAAAVAGESSTATWTVVWTDLLTACDIYRAKAYRVDPVPGT+DQFFAY+AYECDLFEEGSLANLTASIIGNVFGFKAVKALRLEDMRIPFAYLKTFQGPATG+IVERERLDKFGRP LGATVKPKLGLSGKNYGRVVYEGLRGGLDFLKDDENINS PFMRWKERFLYCMEGVNR+AAATGEVKGSYLNVT++TIEQMYERAE+AD++G+VIVM+DLVIGYTAIQTMAIWARKAQMILHLHRAGNSTYARQKNHGINFRVICKWMRMSGVDHIHAGTVVGKLEGDPLMV+GFYNTLLLTEL VNLAEGLFFDM WASLRKCVPVASGGIHCGQMHQLLYY+GDDVVL
Sbjct:    1 GVDPVEAAAAVAGESSTATWTVVWTDLLTACDIYRAKAYRVDPVPGTNDQFFAYIAYECDLFEEGSLANLTASIIGNVFGFKAVKALRLEDMRIPFAYLKTFQGPATGVIVERERLDKFGRPLLGATVKPKLGLSGKNYGRVVYEGLRGGLDFLKDDENINSXPFMRWKERFLYCMEGVNRSAAATGEVKGSYLNVTASTIEQMYERAEYADALGSVIVMIDLVIGYTAIQTMAIWARKAQMILHLHRAGNSTYARQKNHGINFRVICKWMRMSGVDHIHAGTVVGKLEGDPLMVKGFYNTLLLTELKVNLAEGLFFDMSWASLRKCVPVASGGIHCGQMHQLLYYLGDDVVL 353

[Close]

BLAST of mRNA_H-paniculata_contig54113.12856.1 vs. uniprot
Match: RBL_ECTSI (Ribulose bisphosphate carboxylase large chain n=2255 Tax=PX clade TaxID=569578 RepID=RBL_ECTSI)

HSP 1 Score: 692 bits (1787), Expect = 2.390e-249
Identity = 335/361 (92.80%), Postives = 354/361 (98.06%), Query Frame = 1

Query:    1 LVGITPQPGVDPVEAAAAVAGESSTATWTVVWTDLLTACDIYRAKAYRVDPVPGTSDQFFAYVAYECDLFEEGSLANLTASIIGNVFGFKAVKALRLEDMRIPFAYLKTFQGPATGLIVERERLDKFGRPFLGATVKPKLGLSGKNYGRVVYEGLRGGLDFLKDDENINSQPFMRWKERFLYCMEGVNRAAAATGEVKGSYLNVTSATIEQMYERAEFADSVGTVIVMVDLVIGYTAIQTMAIWARKAQMILHLHRAGNSTYARQKNHGINFRVICKWMRMSGVDHIHAGTVVGKLEGDPLMVRGFYNTLLLTELNVNLAEGLFFDMDWASLRKCVPVASGGIHCGQMHQLLYYVGDDVVL 1083
            L  ITPQPGVDPVEAAAAVAGESSTATWTVVWTDLLTACDIYRAKAYRVDPVPGTSDQFFAY+AYECDLFEEGSLANLTASIIGNVFGFKAVKALRLEDMRIP+AYLKTFQGPATG++VERERLDKFGRPFLGATVKPKLGLSGKNYGRVVYEGL GGLDFLKDDENINSQPFMRWKERFLYCMEGVNRAAAATGEVKGSYLN+T+AT+EQMYERAE+A ++G+VIVM+DLVIGYTAIQ+MAIWARKA++ILHLHRAGNSTYARQKNHGINFRVICKWMRM GVDHIHAGTVVGKLEGDPLMV+GFYN+LLLT L +NLAEGLFFDMDWASLRKCVPVASGGIHCGQMHQLLYY+GDDVVL
Sbjct:   43 LFRITPQPGVDPVEAAAAVAGESSTATWTVVWTDLLTACDIYRAKAYRVDPVPGTSDQFFAYIAYECDLFEEGSLANLTASIIGNVFGFKAVKALRLEDMRIPYAYLKTFQGPATGVVVERERLDKFGRPFLGATVKPKLGLSGKNYGRVVYEGLTGGLDFLKDDENINSQPFMRWKERFLYCMEGVNRAAAATGEVKGSYLNITAATVEQMYERAEYAHAIGSVIVMIDLVIGYTAIQSMAIWARKAEVILHLHRAGNSTYARQKNHGINFRVICKWMRMCGVDHIHAGTVVGKLEGDPLMVKGFYNSLLLTHLKINLAEGLFFDMDWASLRKCVPVASGGIHCGQMHQLLYYLGDDVVL 403

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig54113.12856.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig54113.12856.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A4P8JA69_9PHAE	1.260e-258	97.51	Ribulose bisphosphate carboxylase large chain (Fra...	[more]
I6LAK3_9PHAE	4.360e-255	95.29	Ribulose bisphosphate carboxylase large chain (Fra...	[more]
A0A0F6R4P4_9PHAE	3.770e-254	95.01	Ribulose bisphosphate carboxylase large chain (Fra...	[more]
L7PGM1_9PHAE	6.630e-251	95.75	Ribulose bisphosphate carboxylase large chain (Fra...	[more]
A0A678X7I6_9PHAE	9.030e-251	95.48	Ribulose bisphosphate carboxylase large chain (Fra...	[more]
A0A0F6R3I4_9PHAE	1.360e-250	94.94	Ribulose bisphosphate carboxylase large chain (Fra...	[more]
L7PGP4_9PHAE	5.440e-250	96.32	Ribulose bisphosphate carboxylase large chain (Fra...	[more]
L7PGL2_9PHAE	1.100e-249	94.90	Ribulose bisphosphate carboxylase large chain (Fra...	[more]
L7PFE0_9PHAE	1.560e-249	95.18	Ribulose bisphosphate carboxylase large chain (Fra...	[more]
RBL_ECTSI	2.390e-249	92.80	Ribulose bisphosphate carboxylase large chain n=22...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig54113	contig	H-paniculata_contig54113:2..1084 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	700.3
Seed ortholog evalue	4.8e-199
Seed eggNOG ortholog	2880.D1J7D6
Preferred name	rbcL
KEGG rclass	RC00040,RC00172,RC00253,RC00367,RC00859
KEGG ko	ko:K01601,ko:K01963
KEGG Reaction	R00024,R00742,R03140,R04386
KEGG Pathway	ko00061,ko00620,ko00630,ko00640,ko00710,ko00720,ko01100,ko01110,ko01120,ko01130,ko01200,ko01212,map00061,map00620,map00630,map00640,map00710,map00720,map01100,map01110,map01120,map01130,map01200,map01212
KEGG Module	M00082,M00165,M00166,M00376,M00532
Hectar predicted targeting category	other localisation
GOs	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009536,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464
EggNOG free text desc.	ribulose-bisphosphate carboxylase activity
EggNOG OGs	2QTI9@2759,COG1850@1
EC	2.1.3.15,4.1.1.39,6.4.1.2
COG Functional cat.	G
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko00001,ko00002,ko01000
Exons	1
Model size	1083
Cds size	1083
Stop	0
Start	0

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622930556.8406494-CDS-H-paniculata_contig54113:1..1084	1622930556.8406494-CDS-H-paniculata_contig54113:1..1084	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig54113 2..1084 -
1691481346.8439417-CDS-H-paniculata_contig54113:1..1084	1691481346.8439417-CDS-H-paniculata_contig54113:1..1084	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig54113 2..1084 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig54113.12856.1	prot_H-paniculata_contig54113.12856.1	Halopteris paniculata Hal_grac_a_UBK monoicous	polypeptide	H-paniculata_contig54113 2..1084 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-paniculata_contig54113:2..1084-
coding sequence from alignment at H-paniculata_contig54113:2..1084-

protein sequence of mRNA_H-paniculata_contig54113.12856.1

>prot_H-paniculata_contig54113.12856.1 ID=prot_H-paniculata_contig54113.12856.1|Name=mRNA_H-paniculata_contig54113.12856.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=361bp
LVGITPQPGVDPVEAAAAVAGESSTATWTVVWTDLLTACDIYRAKAYRVD
PVPGTSDQFFAYVAYECDLFEEGSLANLTASIIGNVFGFKAVKALRLEDM
RIPFAYLKTFQGPATGLIVERERLDKFGRPFLGATVKPKLGLSGKNYGRV
VYEGLRGGLDFLKDDENINSQPFMRWKERFLYCMEGVNRAAAATGEVKGS
YLNVTSATIEQMYERAEFADSVGTVIVMVDLVIGYTAIQTMAIWARKAQM
ILHLHRAGNSTYARQKNHGINFRVICKWMRMSGVDHIHAGTVVGKLEGDP
LMVRGFYNTLLLTELNVNLAEGLFFDMDWASLRKCVPVASGGIHCGQMHQ
LLYYVGDDVVL

mRNA from alignment at H-paniculata_contig54113:2..1084-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-paniculata_contig54113.12856.1 ID=mRNA_H-paniculata_contig54113.12856.1|Name=mRNA_H-paniculata_contig54113.12856.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1083bp|location=Sequence derived from alignment at H-paniculata_contig54113:2..1084- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTTGTTGGTATCACTCCACAACCAGGTGTGGATCCGGTAGAAGCTGCTGC
TGCGGTTGCTGGAGAATCATCTACTGCTACATGGACAGTAGTTTGGACAG
ATTTATTAACTGCCTGTGATATCTACAGAGCAAAAGCGTACCGAGTAGAT
CCAGTACCTGGTACAAGTGATCAATTTTTTGCTTATGTAGCTTACGAATG
TGATTTATTTGAAGAGGGTTCTCTTGCAAATTTAACAGCATCGATCATTG
GTAATGTATTCGGTTTTAAAGCTGTAAAAGCTTTACGTTTAGAAGATATG
AGAATCCCTTTCGCATATTTAAAAACTTTCCAAGGACCTGCAACAGGTTT
AATTGTAGAAAGAGAAAGATTAGATAAATTTGGTCGTCCTTTCTTAGGAG
CTACTGTAAAACCTAAATTAGGTCTTTCAGGAAAAAACTATGGACGTGTA
GTTTATGAAGGTCTGCGAGGCGGTCTTGATTTTCTTAAAGATGATGAAAA
TATTAATTCACAACCTTTCATGCGTTGGAAGGAACGTTTCTTATACTGTA
TGGAAGGGGTAAACCGTGCCGCTGCTGCTACTGGTGAAGTTAAGGGTTCT
TACCTTAATGTAACTTCTGCTACAATCGAACAAATGTACGAACGTGCAGA
ATTTGCTGATTCAGTTGGGACTGTTATTGTGATGGTCGATTTAGTTATTG
GTTACACAGCTATTCAAACAATGGCAATTTGGGCTCGTAAAGCACAAATG
ATTTTACATTTACATCGTGCTGGTAATTCTACTTACGCTCGACAAAAAAA
TCATGGGATTAACTTCCGTGTTATTTGTAAATGGATGCGTATGTCAGGGG
TAGACCATATTCACGCAGGTACTGTTGTAGGTAAACTAGAAGGTGATCCT
TTAATGGTTCGAGGATTCTATAACACTTTATTATTAACTGAATTAAACGT
TAACTTAGCTGAAGGTCTATTCTTCGATATGGATTGGGCTTCATTAAGAA
AATGTGTTCCAGTAGCTTCTGGTGGAATTCACTGTGGTCAAATGCACCAA
CTTCTTTACTACGTAGGTGATGATGTGGTTTTA

Coding sequence (CDS) from alignment at H-paniculata_contig54113:2..1084-

>mRNA_H-paniculata_contig54113.12856.1 ID=mRNA_H-paniculata_contig54113.12856.1|Name=mRNA_H-paniculata_contig54113.12856.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2166bp|location=Sequence derived from alignment at H-paniculata_contig54113:2..1084- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTTGTTGGTATCACTCCACAACCAGGTGTGGATCCGGTAGAAGCTGCTGC
TGCGGTTGCTGGAGAATCATCTACTGCTACATGGACAGTAGTTTGGACAG
ATTTATTAACTGCCTGTGATATCTACAGAGCAAAAGCGTACCGAGTAGAT
CCAGTACCTGGTACAAGTGATCAATTTTTTGCTTATGTAGCTTACGAATG
TGATTTATTTGAAGAGGGTTCTCTTGCAAATTTAACAGCATCGATCATTG
GTAATGTATTCGGTTTTAAAGCTGTAAAAGCTTTACGTTTAGAAGATATG
AGAATCCCTTTCGCATATTTAAAAACTTTCCAAGGACCTGCAACAGGTTT
AATTGTAGAAAGAGAAAGATTAGATAAATTTGGTCGTCCTTTCTTAGGAG
CTACTGTAAAACCTAAATTAGGTCTTTCAGGAAAAAACTATGGACGTGTA
GTTTATGAAGGTCTGCGAGGCGGTCTTGATTTTCTTAAAGATGATGAAAA
TATTAATTCACAACCTTTCATGCGTTGGAAGGAACGTTTCTTATACTGTA
TGGAAGGGGTAAACCGTGCCGCTGCTGCTACTGGTGAAGTTAAGGGTTCT
TACCTTAATGTAACTTCTGCTACAATCGAACAAATGTACGAACGTGCAGA
ATTTGCTGATTCAGTTGGGACTGTTATTGTGATGGTCGATTTAGTTATTG
GTTACACAGCTATTCAAACAATGGCAATTTGGGCTCGTAAAGCACAAATG
ATTTTACATTTACATCGTGCTGGTAATTCTACTTACGCTCGACAAAAAAA
TCATGGGATTAACTTCCGTGTTATTTGTAAATGGATGCGTATGTCAGGGG
TAGACCATATTCACGCAGGTACTGTTGTAGGTAAACTAGAAGGTGATCCT
TTAATGGTTCGAGGATTCTATAACACTTTATTATTAACTGAATTAAACGT
TAACTTAGCTGAAGGTCTATTCTTCGATATGGATTGGGCTTCATTAAGAA
AATGTGTTCCAGTAGCTTCTGGTGGAATTCACTGTGGTCAAATGCACCAA
CTTCTTTACTACGTAGGTGATGATGTGGTTTTACTTGTTGGTATCACTCC
ACAACCAGGTGTGGATCCGGTAGAAGCTGCTGCTGCGGTTGCTGGAGAAT
CATCTACTGCTACATGGACAGTAGTTTGGACAGATTTATTAACTGCCTGT
GATATCTACAGAGCAAAAGCGTACCGAGTAGATCCAGTACCTGGTACAAG
TGATCAATTTTTTGCTTATGTAGCTTACGAATGTGATTTATTTGAAGAGG
GTTCTCTTGCAAATTTAACAGCATCGATCATTGGTAATGTATTCGGTTTT
AAAGCTGTAAAAGCTTTACGTTTAGAAGATATGAGAATCCCTTTCGCATA
TTTAAAAACTTTCCAAGGACCTGCAACAGGTTTAATTGTAGAAAGAGAAA
GATTAGATAAATTTGGTCGTCCTTTCTTAGGAGCTACTGTAAAACCTAAA
TTAGGTCTTTCAGGAAAAAACTATGGACGTGTAGTTTATGAAGGTCTGCG
AGGCGGTCTTGATTTTCTTAAAGATGATGAAAATATTAATTCACAACCTT
TCATGCGTTGGAAGGAACGTTTCTTATACTGTATGGAAGGGGTAAACCGT
GCCGCTGCTGCTACTGGTGAAGTTAAGGGTTCTTACCTTAATGTAACTTC
TGCTACAATCGAACAAATGTACGAACGTGCAGAATTTGCTGATTCAGTTG
GGACTGTTATTGTGATGGTCGATTTAGTTATTGGTTACACAGCTATTCAA
ACAATGGCAATTTGGGCTCGTAAAGCACAAATGATTTTACATTTACATCG
TGCTGGTAATTCTACTTACGCTCGACAAAAAAATCATGGGATTAACTTCC
GTGTTATTTGTAAATGGATGCGTATGTCAGGGGTAGACCATATTCACGCA
GGTACTGTTGTAGGTAAACTAGAAGGTGATCCTTTAATGGTTCGAGGATT
CTATAACACTTTATTATTAACTGAATTAAACGTTAACTTAGCTGAAGGTC
TATTCTTCGATATGGATTGGGCTTCATTAAGAAAATGTGTTCCAGTAGCT
TCTGGTGGAATTCACTGTGGTCAAATGCACCAACTTCTTTACTACGTAGG
TGATGATGTGGTTTTA