prot_H-paniculata_contig541.12852.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig541.12852.1
Unique Nameprot_H-paniculata_contig541.12852.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length1275
Homology
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BLAST of mRNA_H-paniculata_contig541.12852.1 vs. uniprot
Match: A0A6H5KS89_9PHAE (Calponin-homology (CH) domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS89_9PHAE)

HSP 1 Score: 160 bits (405), Expect = 5.950e-36
Identity = 126/359 (35.10%), Postives = 170/359 (47.35%), Query Frame = 0 
Query:  910 GVRNLSVFVDSEQ--WQRTRPKRRIWNFRWPGRPRKVTIGTCLESPQMKARSSTPSALSRVRPGRRGRKAAERDDDDNLSPFSMKDSYFSDFSTSS-YPELGTVRKQRRPILSRKLSLPLLNTQASTDPSAAVSGRNGRRNGNH-------------------------------GRRRGVGSSTRFQSTGPWLSGVAAVTRVFVRLPSEEAVSRWLVVVLGTRAMV-----------GAAGAAEVALAGRLKDGAMLVNLARAIGGGRATRVPKGVEATTPMMVLLNVHTFMAAARIIGVSEETLFHPKDLVDAPSNGPCARSVLRCLAALSEAVRKHANTDPPGTFYTGPLLGDGRT 1223
            G R + VF+D+E+  W +T P+ R   F WPGR R V +G CL+SP + ARSS  S                +D  +    F+       D   +  +  +G+ R+      S   S  L +  A+     A +GRN   NG                                     G G          W+ G    +     +PSE+ V +W+  VLG RA+            G  G+    L   LKDG +LV LA A+GG RA    + +EATTPM+ L+NVH FMAAAR IGV   +LFH KDLVD P  GPC+ +VL+CL+ALS+A R++A+ DPPGT Y GPLLGDG +
Sbjct:  954 GGRRIEVFLDNEEGEWGQT-PRSRFRLFWWPGRNRHVPVGVCLDSPNV-ARSSWGS----------------KDAKEGAKRFAWDTEGEGDADCNGGHSAVGSERRIDARFSSSTESALLCSEVAAQ--RGATTGRNPT-NGQQVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGAGEGGGKNRLRRWVHGKRHTSEAD-GIPSEQLVEKWIRAVLGPRALGLVEEKRDYDDDGPVGSGGRGLGEELKDGRLLVRLAHAVGGARAASCAEDLEATTPMLQLVNVHAFMAAARAIGVPATSLFHAKDLVDGPPGGPCSPAVLKCLSALSDAARRNASIDPPGTAYDGPLLGDGES 1290
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BLAST of mRNA_H-paniculata_contig541.12852.1 vs. uniprot
Match: D7G3I0_ECTSI (Calponin-homology (CH) domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3I0_ECTSI)

HSP 1 Score: 152 bits (385), Expect = 1.360e-33
Identity = 80/150 (53.33%), Postives = 100/150 (66.67%), Query Frame = 0 
Query: 1082 LPSEEAVSRWLVVVLGTRAMV-----------GAAGAAEVALAGRLKDGAMLVNLARAIGGGRATRVPKGVEATTPMMVLLNVHTFMAAARIIGVSEETLFHPKDLVDAPSNGPCARSVLRCLAALSEAVRKHANTDPPGTFYTGPLLGD 1220
            +PSE+ V +W+  VLG RA+            G  G+    L   LKDG +LV LA A+GG RA    + +EATTPM+ L+NVH FMAAAR IGV    LFH KDLVD P  GPC+ +VL+C+AALS+A R++A+TDPPGT Y GPLLGD
Sbjct: 1097 IPSEQMVKKWVRAVLGPRALGLVEEDGDDDDDGPVGSGGRGLGEELKDGRLLVRLAHAVGGARAAGCAEDLEATTPMLQLVNVHAFMAAARAIGVPATYLFHAKDLVDGPPGGPCSPAVLKCIAALSDAARRNASTDPPGTAYDGPLLGD 1246
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig541.12852.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KS89_9PHAE5.950e-3635.10Calponin-homology (CH) domain-containing protein n... [more]
D7G3I0_ECTSI1.360e-3353.33Calponin-homology (CH) domain-containing protein n... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036872CH domain superfamilyGENE3D1.10.418.10coord: 1083..1212
e-value: 1.1E-14
score: 56.1
IPR036872CH domain superfamilySUPERFAMILY47576Calponin-homology domain, CH-domaincoord: 1085..1205
NoneNo IPR availablePANTHERPTHR31780FAMILY NOT NAMEDcoord: 421..826
IPR001715Calponin homology domainPROSITEPS50021CHcoord: 1082..1201
score: 10.849

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig541contigH-paniculata_contig541:17126..30080 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig541.12852.1mRNA_H-paniculata_contig541.12852.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig541 14538..31641 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig541.12852.1 ID=prot_H-paniculata_contig541.12852.1|Name=mRNA_H-paniculata_contig541.12852.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=1275bp
MRNGEHLAEKESEASSGEEQGSSEDGDCDDFDERNSMISASTFGRGSGVA
APTSFPNFPTSVQAVPTGGPTVTTVRRVPATPSRSRAVTGPITWDHVRST
YVQTWSAGGATGPVIPPAAATKKLARKNSLARQNSLARQNSQTCLDTGAP
AGAVARVVAIVSAAEQAALEKAKEDAETLPAWSQHPEAEHSTSNSASASE
PDAKAGKNLRDSQTTEKSSDSGGEDPAASGWNLESWSLESFMTRWSVFGG
LGTPRGKPAAVATVALPHDRNDDEHTRTADPPLTRQSSTKCMTAAANSTM
ARTGDTAKTAAVRSPQAREASHVTVGTEGIGDETNATTTMAAAAATRARH
DTREAPGNAETGSAEPNSTVDDNIKLSLTTSEKGRSWGTSGADDGSDVSH
SEGENMLELTLETSTVSNRTSDTSTKSNGSSSRGGVLDVTPEMPSTTNLT
SNTSRNSNGSSSRGGVLDVTPETPSPSNLTSNTSTNSNGSSSRDGALDVT
PEASSPSSFTSNTSTNSNGSSSRSGTLNATPEASSPSNFTSNTSTDSNGS
SSRSGALNATPEASSPSNFISNASKKLNGFSPRRVAAAAAATAVVRRGLP
GRESAGAAEQNDEVLGKISYYQSGAPSLARSADDIFLEGGPVYTRGYRRS
ESIPSPRERVAAPAAGEWKELSSVALAAIVAGAARVKWGREGAAERARMT
LSAKIDSRSTAWDSATGVRVRASLTSMGGAGYDSGSVSGLPSSSAEMFGE
DNPALVSPKSEEQKDEEVGGVRGGIWTGVGGMVPGVYVGDGQGGSSGYNS
SNNNNNSNNNNSNNNNNSSNNAEDRGNRKSSPASYAKIHLHRRARMSGQG
DVSVTSVAPARVGCYGSGGWVRVSRSSSAGSLFSICLGGEDGGVVVGSRE
RRRGEGGGGGVRNLSVFVDSEQWQRTRPKRRIWNFRWPGRPRKVTIGTCL
ESPQMKARSSTPSALSRVRPGRRGRKAAERDDDDNLSPFSMKDSYFSDFS
TSSYPELGTVRKQRRPILSRKLSLPLLNTQASTDPSAAVSGRNGRRNGNH
GRRRGVGSSTRFQSTGPWLSGVAAVTRVFVRLPSEEAVSRWLVVVLGTRA
MVGAAGAAEVALAGRLKDGAMLVNLARAIGGGRATRVPKGVEATTPMMVL
LNVHTFMAAARIIGVSEETLFHPKDLVDAPSNGPCARSVLRCLAALSEAV
RKHANTDPPGTFYTGPLLGDGRTLRRDRAAARGYGRSAGVSGSGGSLPTS
PDSSLGGGLKKKRLCKSEEENIFI*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036872CH_dom_sf
IPR001715CH-domain