mRNA_H-paniculata_contig54.12829.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig54.12829.1
Unique NamemRNA_H-paniculata_contig54.12829.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig54.12829.1 vs. uniprot
Match: A0A6H5JN16_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN16_9PHAE)

HSP 1 Score: 252 bits (644), Expect = 4.980e-80
Identity = 133/195 (68.21%), Postives = 161/195 (82.56%), Query Frame = 1 
Query:    1 MDLRSG-PPPPPRGRVPPELYTELHMESHAGAGFHVPRRLGERNLDRNHREVDT-SPYTEDAPRNILADTPETIVGENVHVKGELSFERLLRVDGSFKGKLTSTGDLVIGANGVIRGNIIGVREIVSDGTIVGNIEAERLRLRRSALVIGDVTCHSLSVDPDVSIRGKLNVHKDAPDKLYLEGED-SPEEEVASS 576
            M+L SG PPPPPRG+     Y +   E  AGAG+HVPRRLGER LDRN   ++  + Y   APRNILA+TPET VGENVHVKGELSF+RLLRVDGSFKG+L STGDLVIGA G++RGNI  +RE+VSDGT+VGNI+AER+RLRRSA+VIG++TC+SLS+DPDVSI GKLNVH  AP +L+LEGE+ +PE+E+A S
Sbjct:    1 MELHSGGPPPPPRGKRIAPAYHDERSEPSAGAGYHVPRRLGERELDRNPGRIEEPATYATPAPRNILAETPETTVGENVHVKGELSFDRLLRVDGSFKGQLVSTGDLVIGATGIVRGNIEHLREVVSDGTVVGNIQAERVRLRRSAIVIGNITCYSLSMDPDVSISGKLNVHIQAPSRLHLEGEEEAPEDEMADS 195
[Close]
BLAST of mRNA_H-paniculata_contig54.12829.1 vs. uniprot
Match: D7FI98_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI98_ECTSI)

HSP 1 Score: 167 bits (424), Expect = 7.390e-48
Identity = 86/120 (71.67%), Postives = 106/120 (88.33%), Query Frame = 1 
Query:  238 KGELSFERLLRVDGSFKGKLTSTGDLVIGANGVIRGNIIGVREIVSDGTIVGNIEAERLRLRRSALVIGDVTCHSLSVDPDVSIRGKLNVHKDAPDKLYLEGED-SPEEEVASSRDNKSR 594
            +GELSF+RLLRVDGSFKG+L STGDLVIGA GV+RGNI  +RE+VSDGT+VGNI+AER+RLRRSA+VIG++TC+SLS+DPDVSI GKLNVH  AP +L+L+GE+ +PE+EVA S  N  R
Sbjct:   14 QGELSFDRLLRVDGSFKGQLVSTGDLVIGATGVVRGNIDHLREVVSDGTVVGNIQAERVRLRRSAIVIGNITCYSLSMDPDVSISGKLNVHIQAPSRLHLDGEEEAPEDEVADSSGNADR 133
[Close]
BLAST of mRNA_H-paniculata_contig54.12829.1 vs. uniprot
Match: A0A835YKE5_9STRA (Polymer-forming cytoskeletal-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKE5_9STRA)

HSP 1 Score: 116 bits (291), Expect = 1.060e-28
Identity = 55/105 (52.38%), Postives = 77/105 (73.33%), Query Frame = 1 
Query:  196 ADTPETIVGENVHVKGELSFERLLRVDGSFKGKLTSTGDLVIGANGVIRGNIIGVREIVSDGTIVGNIEAERLRLRRSALVIGDVTCHSLSVDPDVSIRGKLNVH 510
            ++TPET +GE V V GELSF+RLLR+DG F G+L S GDLV+G  GV+ G+++ + E++ DG +VG+I  +++ LR  A V G++TC SL VDP V + G LNVH
Sbjct:   28 SETPETTIGERVSVSGELSFDRLLRIDGRFSGRLLSQGDLVVGPTGVLTGDVVDMGEVIVDGKVVGDISVQKVSLRGRAEVHGNITCKSLCVDPTVIVVGGLNVH 132
[Close]
BLAST of mRNA_H-paniculata_contig54.12829.1 vs. uniprot
Match: A0A6G0WCC1_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WCC1_9STRA)

HSP 1 Score: 114 bits (284), Expect = 5.730e-27
Identity = 58/124 (46.77%), Postives = 84/124 (67.74%), Query Frame = 1 
Query:  178 APRNILADTPETIVGENVHVKGELSFERLLRVDGSFKGKLTSTGDLVIGANGVIRGNIIGVREI-VSDGTIVGNIEAERLRLRRSALVIGDVTCHSLSVDPDVSIRGKLNVHKDAPDKLYLEGE 546
            AP   +    ET +G  V +KGELSFERLLR++G F+GKL S G LV+G  G++ GNI G++E+ V+ G ++GNI+ +RL LR    + G+VT  S+ +DPD  + G LN++  AP K+ L+GE
Sbjct:   68 APLKTIEGDAETTIGVAVKMKGELSFERLLRIEGEFEGKLISKGSLVVGHKGLLNGNIDGMKEVLVAGGRVLGNIQVDRLVLRDKGQIFGNVTAKSVRIDPDCILVGTLNINPHAPQKINLKGE 191
[Close]
BLAST of mRNA_H-paniculata_contig54.12829.1 vs. uniprot
Match: A0A5D6Y579_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y579_9STRA)

HSP 1 Score: 111 bits (277), Expect = 9.260e-26
Identity = 57/115 (49.57%), Postives = 81/115 (70.43%), Query Frame = 1 
Query:  205 PETIVGENVHVKGELSFERLLRVDGSFKGKLTSTGDLVIGANGVIRGNIIGVREI-VSDGTIVGNIEAERLRLRRSALVIGDVTCHSLSVDPDVSIRGKLNVHKDAPDKLYLEGE 546
            PET +G  V +KGELSFERLLR++G F+GKL S G LV+GA GV+ G +  ++E+ V+ G IVGNI  E+L LR  A V G++T  ++ +DPD  + G+LNV+  AP+ +  +GE
Sbjct:   87 PETTIGVAVKMKGELSFERLLRIEGEFEGKLVSKGSLVVGAKGVLTGPVENMKEVHVTGGKIVGNITVEKLVLRDKAQVFGNITAKTVKIDPDCVVVGRLNVNPQAPELINEKGE 201
[Close]
BLAST of mRNA_H-paniculata_contig54.12829.1 vs. uniprot
Match: T0RP53_SAPDV (Uncharacterized protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0RP53_SAPDV)

HSP 1 Score: 110 bits (276), Expect = 9.400e-26
Identity = 75/195 (38.46%), Postives = 100/195 (51.28%), Query Frame = 1 
Query:    1 MDLRSGPPPPPRGRVPPELYTELHMESHAGAGFHVPRRLGERNLDRNHREVDTSPYTED-------APRNILADTPETIVGENVHVKGELSFERLLRVDGSFKGKLTSTGDLVIGANGVIRGNIIGVREI-VSDGTIVGNIEAERLRLRRSALVIGDVTCHSLSVDPDVSIRGKLNVHKDAPDKLYLEGEDSPEE 561
            M  R  PP P R     E   +      + +    PRR       RNHR    SP +         AP   +    ET +G  V +KGELSFERLLR++G F G+L S G L+IGA G++ G + G++E+ VS G I+GNI  ERL LR         T  S+ +DPD  + G LNV+  AP ++ L+GE   EE
Sbjct:    1 MVSRQPPPKPKRTTYHDETDADTFESDDSYSAPVAPRR------GRNHRATSQSPPSSPVSNRPAVAPLKTVDGEAETTIGVAVKMKGELSFERLLRIEGEFDGRLISKGSLIIGAKGLLTGPVEGMKEVLVSGGRIIGNINVERLVLRXXXXXXXXXTAKSIRIDPDCVVLGSLNVNPHAPSRINLKGEPVTEE 189
[Close]
BLAST of mRNA_H-paniculata_contig54.12829.1 vs. uniprot
Match: A0A1V9ZZB6_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZZB6_9STRA)

HSP 1 Score: 107 bits (266), Expect = 2.640e-24
Identity = 74/200 (37.00%), Postives = 100/200 (50.00%), Query Frame = 1 
Query:    7 LRSGPPPPPRGRVPPELYTELH-------MESHAGAGFHVPRRLGERNLDRNHREVDTSP-------YTEDAPRNILADTPETIVGENVHVKGELSFERLLRVDGSFKGKLTSTGDLVIGANGVIRGNIIGVREI-VSDGTIVGNIEAERLRLRRSALVIGDVTCHSLSVDPDVSIRGKLNVHKDAPDKLYLEGEDSPEE 561
            +R  PP P R      +Y   H        ES  G    V  R G     RNHR    SP         + AP   +    ET +G  V ++GELSFERLLR++G F G+L S G LV+GA G++ G + G++E+ +S G I+GNI  ERL            T  S+ +DPD  + G LNV+  AP ++ L+GE   EE
Sbjct:    1 MRQAPPKPKR------IYQAAHDGDDGENFESDDGYNAPVAPRRG-----RNHRATSQSPPGSPQGGRPQVAPLKTVDGDAETTIGPAVKMRGELSFERLLRIEGEFDGRLISKGSLVVGAKGLLTGPVDGMKEVLISGGRIIGNINVERLXXXXXXXXXXXXTAKSIRIDPDCVVLGSLNVNPHAPSRINLKGEPVTEE 189
[Close]
BLAST of mRNA_H-paniculata_contig54.12829.1 vs. uniprot
Match: F0VZS1_9STRA (Uncharacterized protein AlNc14C3G400 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0VZS1_9STRA)

HSP 1 Score: 105 bits (261), Expect = 1.510e-23
Identity = 55/114 (48.25%), Postives = 75/114 (65.79%), Query Frame = 1 
Query:  208 ETIVGENVHVKGELSFERLLRVDGSFKGKLTSTGDLVIGANGVIRGNIIGVREI-VSDGTIVGNIEAERLRLRRSALVIGDVTCHSLSVDPDVSIRGKLNVHKDAPDKLYLEGE 546
            ET +G  V ++GELSFERLLR++G F GKL S G LV+G  G + G++  ++E+ ++ G IVGNI  E++ LR  A V G++T  S+ VDPD  I G LNVH  AP  +   GE
Sbjct:   92 ETTIGAAVKMRGELSFERLLRIEGEFDGKLVSKGSLVVGTKGCLLGDVDSMKEVFITGGKIVGNIAVEKVVLRDKASVFGNITAKSIKVDPDCVIVGTLNVHPQAPQVIDENGE 205
[Close]
BLAST of mRNA_H-paniculata_contig54.12829.1 vs. uniprot
Match: F0Y5F7_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y5F7_AURAN)

HSP 1 Score: 108 bits (269), Expect = 1.300e-22
Identity = 56/137 (40.88%), Postives = 89/137 (64.96%), Query Frame = 1 
Query:  184 RNILADTPETIVGENVHVKGELSFERLLRVDGSFKGKLTSTGDLVIGANGVIRGNIIGVREIVSDGTIVGNIEAERLRLRRSALVIGDVTCHSLSVDPDVSIRGKLNVHKDAPDKLYLEG--------EDSPEEEVA 570
            +++L   PET++GE + ++G+L FERLLR+DG F+G+L S GDL++G  G + G++  + +IV  G ++GNI  +R+ L  SA + GD+TC  L +DP V + G LN++  AP+K+  +G        E +PEE  A
Sbjct:  352 KSLLEMEPETVIGETLSIEGKLRFERLLRLDGKFEGELISEGDLIVGPQGELVGDVKTMSDIVVFGKVIGNIAVDRVELCGSASIYGDITCKVLLMDPTVVLVGNLNINPFAPNKMAPDGSEVGGPKPEKAPEEPAA 488
[Close]
BLAST of mRNA_H-paniculata_contig54.12829.1 vs. uniprot
Match: A0A067BQL5_SAPPC (Uncharacterized protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067BQL5_SAPPC)

HSP 1 Score: 106 bits (265), Expect = 5.210e-22
Identity = 72/192 (37.50%), Postives = 97/192 (50.52%), Query Frame = 1 
Query:    1 MDLRSGPPPPPRGRVPPELYTELHMESHAGAGFHVPRRLGERNLDRNHREVDTSPYTED----APRNILADTPETIVGENVHVKGELSFERLLRVDGSFKGKLTSTGDLVIGANGVIRGNIIGVREI-VSDGTIVGNIEAERLRLRRSALVIGDVTCHSLSVDPDVSIRGKLNVHKDAPDKLYLEGEDSPEE 561
            M  R  PP P R     E   +      + +    PRR       RNHR    SP +      AP   +    ET +G  V +KGELSFERLLR++G F G+L S G LVIGA G++ G + G++E+ VS G I+GN+  ER             T  S+ +DPD  + G LNV+  AP ++ L+GE   EE
Sbjct:  710 MVSRQPPPKPKRTTYHDETDADTFESDDSYSAPVAPRR------GRNHRATSQSPPSSPVGKVAPLKTVDGEAETTIGVAVKMKGELSFERLLRIEGEFDGRLVSKGSLVIGAKGLLTGPVEGMKEVLVSGGRIIGNVNVERXXXXXXXXXXXXXTAKSIRIDPDCVVVGSLNVNPHAPSRINLKGEPVTEE 895
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig54.12829.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JN16_9PHAE4.980e-8068.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FI98_ECTSI7.390e-4871.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YKE5_9STRA1.060e-2852.38Polymer-forming cytoskeletal-domain-containing pro... [more]
A0A6G0WCC1_9STRA5.730e-2746.77Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A5D6Y579_9STRA9.260e-2649.57Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
T0RP53_SAPDV9.400e-2638.46Uncharacterized protein n=1 Tax=Saprolegnia diclin... [more]
A0A1V9ZZB6_9STRA2.640e-2437.00Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
F0VZS1_9STRA1.510e-2348.25Uncharacterized protein AlNc14C3G400 n=1 Tax=Albug... [more]
F0Y5F7_AURAN1.300e-2240.88Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A067BQL5_SAPPC5.210e-2237.50Uncharacterized protein n=1 Tax=Saprolegnia parasi... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig54contigH-paniculata_contig54:1284..4863 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score171.4
Seed ortholog evalue5.8e-40
Seed eggNOG ortholog2880.D7FI98
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Polymer-forming cytoskeletal
EggNOG OGs2RXV0@2759,COG1664@1
Ec32 ortholog descriptionProtein of unknown function DUF583
Ec32 orthologEc-11_001120.1
COG Functional cat.M
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons6
Model size903
Cds size819
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930552.5195453-UTR-H-paniculata_contig54:1283..13671622930552.5195453-UTR-H-paniculata_contig54:1283..1367Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig54 1284..1367 -
1691481344.9903398-UTR-H-paniculata_contig54:1283..13671691481344.9903398-UTR-H-paniculata_contig54:1283..1367Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig54 1284..1367 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930552.5434768-CDS-H-paniculata_contig54:1367..18201622930552.5434768-CDS-H-paniculata_contig54:1367..1820Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig54 1368..1820 -
1691481345.0031002-CDS-H-paniculata_contig54:1367..18201691481345.0031002-CDS-H-paniculata_contig54:1367..1820Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig54 1368..1820 -
1622930552.5597658-CDS-H-paniculata_contig54:1985..21111622930552.5597658-CDS-H-paniculata_contig54:1985..2111Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig54 1986..2111 -
1691481345.013543-CDS-H-paniculata_contig54:1985..21111691481345.013543-CDS-H-paniculata_contig54:1985..2111Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig54 1986..2111 -
1622930552.5742724-CDS-H-paniculata_contig54:2440..24851622930552.5742724-CDS-H-paniculata_contig54:2440..2485Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig54 2441..2485 -
1691481345.0237224-CDS-H-paniculata_contig54:2440..24851691481345.0237224-CDS-H-paniculata_contig54:2440..2485Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig54 2441..2485 -
1622930552.590264-CDS-H-paniculata_contig54:4318..44111622930552.590264-CDS-H-paniculata_contig54:4318..4411Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig54 4319..4411 -
1691481345.0339057-CDS-H-paniculata_contig54:4318..44111691481345.0339057-CDS-H-paniculata_contig54:4318..4411Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig54 4319..4411 -
1622930552.6088378-CDS-H-paniculata_contig54:4602..46261622930552.6088378-CDS-H-paniculata_contig54:4602..4626Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig54 4603..4626 -
1691481345.043678-CDS-H-paniculata_contig54:4602..46261691481345.043678-CDS-H-paniculata_contig54:4602..4626Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig54 4603..4626 -
1622930552.6281672-CDS-H-paniculata_contig54:4785..48631622930552.6281672-CDS-H-paniculata_contig54:4785..4863Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig54 4786..4863 -
1691481345.0541215-CDS-H-paniculata_contig54:4785..48631691481345.0541215-CDS-H-paniculata_contig54:4785..4863Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig54 4786..4863 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig54.12829.1prot_H-paniculata_contig54.12829.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig54 1368..4863 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig54.12829.1

>prot_H-paniculata_contig54.12829.1 ID=prot_H-paniculata_contig54.12829.1|Name=mRNA_H-paniculata_contig54.12829.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=273bp
MDLRSGPPPPPRGRVPPELYTELHMESHAGAGFHVPRRLGERNLDRNHRE
VDTSPYTEDAPRNILADTPETIVGENVHVKGELSFERLLRVDGSFKGKLT
STGDLVIGANGVIRGNIIGVREIVSDGTIVGNIEAERLRLRRSALVIGDV
TCHSLSVDPDVSIRGKLNVHKDAPDKLYLEGEDSPEEEVASSRDNKSRET
GIEKKSKEGKESVAKSSGGSSKKDGNTKKENGSSDNSRDRREKEDRGKED
SHRKKSKDGGSGDSSKSKTTTK*
back to top

mRNA from alignment at H-paniculata_contig54:1284..4863-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig54.12829.1 ID=mRNA_H-paniculata_contig54.12829.1|Name=mRNA_H-paniculata_contig54.12829.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3580bp|location=Sequence derived from alignment at H-paniculata_contig54:1284..4863- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGACCTTCGCTCAGGACCGCCACCACCTCCACGAGGACGAGTGCCACC
AGAGCTTTACACTGAACTTCATATGGAGGTGACTATAATGGTGTACTGTT
AATACCATAGGATTCACTGGCACAGTAATTATGGGGCAGGCTTAGATGAC
CTGCACGCGTCAGTAGACCGTTTGAACTAATGGCATCTTCGTCCTTGTTT
CCGTACCTCGCGTTGTTCCAACACCATCTTGGCCCAGTCACATGCTGGAG
CAGGGTTCCATGTGAGTGGTCAAAATGCAGTTTATCGAGAGTCGTTTTTT
ATCTGGGTCAGTAGAATGTAGCACATCCACAAGAGATAGACGTGGACAGA
CGAGTAGTGGCTGCTCTAATACTGTAGTTGGTCATCGAACTAGTCATAAA
CTACGAACTGCCGTCAAGACAATCTCGTTAAATTTGCCTTCGGTCAAATC
AGGTGCCTCGACGACTCGGTGAACGTAATCTAGACAGGAATCACCGGGAG
GTCGATACCTCACCATATACGGAGGACGCTCCTCGCAATATACTGGTGAG
ACCCTTCGCGGTAGTGCAATACTGCGTAGAGAACAGTGACACAACAAAGA
AATCGACTTGAAGAGCGTGCGTTTTCAAAACAACTTGGGCTATTTACAAT
ATCTGCTTTAAATTGTGCCAAGCTTTGAGATGACCTATTCCGTTCATGTG
ACAGACATGTTCATCACCGGGGTCTATTCGGCCGTACAGTTGGGGCTCGC
TAGTGAGAAGTAGATCAGTAAGAATCCGAGGCTCAAGAAGGAAAAGAGAA
CTTCGGCACAAGAAATGGAGCTCAAATTGTGGACTTACATTAATTCCTAT
ATAAAGGGAGAAACAGTACTGCTCGTGATTCTCGGCAAAACAATGTGCTG
GGCCTAAATCCAAATAAGCGTTTCTTACTGGAGGGCCCATACTGTAGCGA
TACGACATCGTTACGGTTTACTGTCGCATTCTCGGCGTCTCTTTATACCT
GCATGCCGTTTTTGACAGTCTTTTCATGTAGAAGTCCTACATGGAAGCTT
ACCTTTAACAAGCGAGGGTTGGAAATATGAAGCGCAGTCACACAGGTCAC
GTTTTGGGATATTCGGTGTTTTTCAATGTCCCAAGCAGACAGTACACATT
AAAGCTCGCCTTACAGAGCGATGATCGGAGATCGGGACTTTTTTGCACCG
ACACTTTAGTGTTTTAGACCCCAGGGATCAGAAAATAAAATTAATGCTAC
GGCATCTTTTATCGTATACTTTTTCTAGTCCTGCCGTAGAACATTCTTCG
TATGGGACTAACCGGGCGTATTGTAGTGCCGAATTCACTGCATGATGGTG
AGATGCGCGGTTGCGTGAGAACGCAGTCGAGGGAAGATACAGAGATAGTT
TTTGTAGATTGATCATTTGTGTATACAATGTCACAGAGTGACCCTTGAAA
TTTAACACAAATGGTTTCCTACTATATCCGTATACCCGTATAACCCAGGT
CCCTAACGATCAAGATTACAATTAAAAGGATATTGGTGAAATGGGAACCC
AAGTTTGAGATGGGGACCCTGGGTTATATTGGAAATAGGCTGTTTCCTGA
AAATCAAATCTCAAACTTGGGTTCCCATTTCACCAATATGCTGCTAATTC
AAATAAATAATTGTGTATCAATATGTTGTTAATGCAACCACGTCTGAAGT
ACCACCCTCCGACATTGGTATATTCACAAGGTTAAACAATCGCATTCATA
GCACAACAAGTGTACTATCATATCACACAAGATTTCCTTTCCTTGTCAAC
AGTTTAGAAACAGAAAGACAATTTTTCCTTCTCGATAAACAATTCCGAAT
CCCAGCGACAACCAAGCATTGTCTACTCGACGAGCATTTTCAACACACAG
CAAAATCCAAGGTTCCTCTCCACTAAATAGTTTCAAAACGCAGCAGGTAA
CAAATGTCCCTCCGTAGTAAACAGTATGCAAACACAGAATATCTTCCTAC
ATTTTGGAGTCACATTGGCACATTGAACACAACAAATAATCAACCACCGT
CTTTCTCGACCCAAAACAAGAGGGAAGTGTGCAAGATGTGCGGATCGTAT
TTTCACGGCTAAAACGCATCATCAAACGTGGCCCTACCTGGTATATTTTT
AAGAAAGGGCGTGTATAGTACTTGATCGTACAGTGGCATGAAGTTTTGGT
TCTACAATAGAAATATCCTTCTTGAACGCATGGCTGGACAATGGACGGAA
GAGACCATCACCAACATGTGGATAGAGCAAAAGAAGGGTTGATTTGACGA
GGAGGCCCAATGTTTTGCTTATTCAGGAAGATGTGAAATTTTACGAACTT
TGGTTTGTCGCATCCTCCCTCTTCGCAGGCGGATACACCGGAGACAATCG
TGGGCGAAAATGTTCACGTGAAGGCAAGATATTTTCAGGACTGTATGCAC
TGGTAATAATCCGCCAAGCCTTGTTGATGTGGGTGGATTTTTCTACCACG
AGGCACATCGTCCACCGAATAAAACAGACCTGGTGTAACATGTGAAGGAT
AACTTGCAATTCTATCTCGTCGATTATGACCCGTCAAAAGATAGCTGGAT
GATGCTGATTAACTTCCCGTAAATATCTGGTTTGGCAACACTAGTATGTT
GTACACAGGAATCATGATTATGAAAGAACCTGATAACAATGGTACTTTAG
AACTGAGCTCTGTACGCTGAGTCACGCCTCGCTGACATTTGCTTTTCGCC
AGGGAGAGCTTTCGTTCGAACGATTGCTTCGTGTAGATGGCTCGTTCAAG
GGAAAGTTAACTTCCACCGGTGATCTTGTGATTGGAGCAAACGGTGTCAT
CCGTGGCAATATCATTGGCGTGAGAGAGGTAAGGAGACTTCAATGCCCGT
ACAATATGCTGTAGTAGGGTAGATTGAAGGAGGGCGAATTTGTTGTTTGA
ACCTCCAGTGAAACTTCCAAACTGGCTTTACGCACCCTCTGAGGGATGCC
TTTGTTGCTGACGATGGTTGGATTCGTGTCGTGGGTTCACCAGATCGTAT
CGGATGGCACAATTGTGGGCAATATTGAGGCCGAGCGATTGCGACTACGT
CGTTCTGCATTGGTGATCGGAGACGTTACGTGTCACAGTCTCAGCGTGGA
CCCCGACGTGTCCATCAGGGGAAAGTTGAATGTACATAAAGACGCGCCCG
ACAAGCTGTACCTAGAGGGAGAGGATTCACCAGAAGAGGAGGTTGCTAGC
TCCAGAGACAATAAATCACGTGAAACGGGAATTGAAAAGAAGTCAAAGGA
AGGAAAGGAATCTGTCGCCAAGTCCAGTGGAGGGAGCAGCAAGAAGGACG
GGAACACGAAAAAGGAAAACGGCTCCTCGGATAACTCACGAGATCGACGC
GAGAAGGAGGACAGGGGCAAAGAAGATAGTCATAGAAAAAAGTCAAAGGA
CGGTGGCTCAGGCGACAGCAGCAAGTCCAAAACGACTACCAAATAGAAAG
TTAAACAACTGATAAGCATTACGTGCTTCGTTTTGCTGCGGGGCGCAAAT
AATAATAACAATCCCTGTACATAATTCAAT
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig54:1284..4863-

>mRNA_H-paniculata_contig54.12829.1 ID=mRNA_H-paniculata_contig54.12829.1|Name=mRNA_H-paniculata_contig54.12829.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1638bp|location=Sequence derived from alignment at H-paniculata_contig54:1284..4863- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGACCTTCGCTCAGGACCGCCACCACCTCCACGAGGACGAGTGCCACC
AGAGCTTTACACTGAACTTCATATGGAGATGGACCTTCGCTCAGGACCGC
CACCACCTCCACGAGGACGAGTGCCACCAGAGCTTTACACTGAACTTCAT
ATGGAGTCACATGCTGGAGCAGGGTTCCATTCACATGCTGGAGCAGGGTT
CCATGTGCCTCGACGACTCGGTGAACGTAATCTAGACAGGAATCACCGGG
AGGTCGATACCTCACCATATACGGAGGACGCTCCTCGCAATATACTGGTG
CCTCGACGACTCGGTGAACGTAATCTAGACAGGAATCACCGGGAGGTCGA
TACCTCACCATATACGGAGGACGCTCCTCGCAATATACTGGCGGATACAC
CGGAGACAATCGTGGGCGAAAATGTTCACGTGAAGGCGGATACACCGGAG
ACAATCGTGGGCGAAAATGTTCACGTGAAGGGAGAGCTTTCGTTCGAACG
ATTGCTTCGTGTAGATGGCTCGTTCAAGGGAAAGTTAACTTCCACCGGTG
ATCTTGTGATTGGAGCAAACGGTGTCATCCGTGGCAATATCATTGGCGTG
AGAGAGGGAGAGCTTTCGTTCGAACGATTGCTTCGTGTAGATGGCTCGTT
CAAGGGAAAGTTAACTTCCACCGGTGATCTTGTGATTGGAGCAAACGGTG
TCATCCGTGGCAATATCATTGGCGTGAGAGAGATCGTATCGGATGGCACA
ATTGTGGGCAATATTGAGGCCGAGCGATTGCGACTACGTCGTTCTGCATT
GGTGATCGGAGACGTTACGTGTCACAGTCTCAGCGTGGACCCCGACGTGT
CCATCAGGGGAAAGTTGAATGTACATAAAGACGCGCCCGACAAGCTGTAC
CTAGAGGGAGAGGATTCACCAGAAGAGGAGGTTGCTAGCTCCAGAGACAA
TAAATCACGTGAAACGGGAATTGAAAAGAAGTCAAAGGAAGGAAAGGAAT
CTGTCGCCAAGTCCAGTGGAGGGAGCAGCAAGAAGGACGGGAACACGAAA
AAGGAAAACGGCTCCTCGGATAACTCACGAGATCGACGCGAGAAGGAGGA
CAGGGGCAAAGAAGATAGTCATAGAAAAAAGTCAAAGGACGGTGGCTCAG
GCGACAGCAGCAAGTCCAAAACGACTACCAAATAGATCGTATCGGATGGC
ACAATTGTGGGCAATATTGAGGCCGAGCGATTGCGACTACGTCGTTCTGC
ATTGGTGATCGGAGACGTTACGTGTCACAGTCTCAGCGTGGACCCCGACG
TGTCCATCAGGGGAAAGTTGAATGTACATAAAGACGCGCCCGACAAGCTG
TACCTAGAGGGAGAGGATTCACCAGAAGAGGAGGTTGCTAGCTCCAGAGA
CAATAAATCACGTGAAACGGGAATTGAAAAGAAGTCAAAGGAAGGAAAGG
AATCTGTCGCCAAGTCCAGTGGAGGGAGCAGCAAGAAGGACGGGAACACG
AAAAAGGAAAACGGCTCCTCGGATAACTCACGAGATCGACGCGAGAAGGA
GGACAGGGGCAAAGAAGATAGTCATAGAAAAAAGTCAAAGGACGGTGGCT
CAGGCGACAGCAGCAAGTCCAAAACGACTACCAAATAG
back to top