mRNA_H-paniculata_contig53987.12825.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig53987.12825.1
Unique NamemRNA_H-paniculata_contig53987.12825.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig53987.12825.1 vs. uniprot
Match: D8LI32_ECTSI (GRIP domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LI32_ECTSI)

HSP 1 Score: 80.5 bits (197), Expect = 1.430e-16
Identity = 39/43 (90.70%), Postives = 41/43 (95.35%), Query Frame = 1 
Query:    1 MSDPKLQYLKNLMLKYLGTDEGEAREHMERAIATVLQFSEEVR 129
            + DPKLQYLKNLMLKYLGTDEGEAREHMERAIATVLQFSE+ R
Sbjct:  349 LQDPKLQYLKNLMLKYLGTDEGEAREHMERAIATVLQFSEQER 391
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BLAST of mRNA_H-paniculata_contig53987.12825.1 vs. uniprot
Match: A0A7S2C3B8_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C3B8_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 8.430e-12
Identity = 30/39 (76.92%), Postives = 35/39 (89.74%), Query Frame = 1 
Query:    1 MSDPKLQYLKNLMLKYLGTDEGEAREHMERAIATVLQFS 117
            + DP+LQYLKNLMLKYL T+E EA+EHMERAI TVLQF+
Sbjct:   25 VEDPRLQYLKNLMLKYLCTEEYEAKEHMERAIMTVLQFT 63
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BLAST of mRNA_H-paniculata_contig53987.12825.1 vs. uniprot
Match: A0A7S2S2V8_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S2V8_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 4.080e-11
Identity = 30/40 (75.00%), Postives = 35/40 (87.50%), Query Frame = 1 
Query:    1 MSDPKLQYLKNLMLKYLGTDEGEAREHMERAIATVLQFSE 120
            + DP+ QYLKNLM+KYL TDE EAREHMERA+ TVLQFS+
Sbjct:  386 LEDPRFQYLKNLMIKYLCTDEFEAREHMERAVMTVLQFSD 425
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BLAST of mRNA_H-paniculata_contig53987.12825.1 vs. uniprot
Match: A0A7S3NPJ7_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NPJ7_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 9.120e-7
Identity = 25/37 (67.57%), Postives = 29/37 (78.38%), Query Frame = 1 
Query:   13 KLQYLKNLMLKYLGTDEGEAREHMERAIATVLQFSEE 123
            KLQYLKNLM KYL T + + REHMERAI  VL FS++
Sbjct:  462 KLQYLKNLMAKYLATAQAQPREHMERAIVMVLNFSDD 498
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BLAST of mRNA_H-paniculata_contig53987.12825.1 vs. uniprot
Match: A0A397FDV0_9STRA (GRIP domain-containing protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397FDV0_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 1.170e-6
Identity = 21/33 (63.64%), Postives = 29/33 (87.88%), Query Frame = 1 
Query:   19 QYLKNLMLKYLGTDEGEAREHMERAIATVLQFS 117
            +YLKN+++KY+ TD+ E +EHME+AIATVL FS
Sbjct:  103 EYLKNIVIKYMSTDQDEVKEHMEKAIATVLNFS 135
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BLAST of mRNA_H-paniculata_contig53987.12825.1 vs. uniprot
Match: A0A397DQM9_9STRA (GRIP domain-containing protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397DQM9_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 1.170e-6
Identity = 21/33 (63.64%), Postives = 29/33 (87.88%), Query Frame = 1 
Query:   19 QYLKNLMLKYLGTDEGEAREHMERAIATVLQFS 117
            +YLKN+++KY+ TD+ E +EHME+AIATVL FS
Sbjct:  103 EYLKNIVIKYMSTDQDEVKEHMEKAIATVLNFS 135
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BLAST of mRNA_H-paniculata_contig53987.12825.1 vs. uniprot
Match: A0A1V9YAK9_9STRA (GRIP domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YAK9_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 1.250e-6
Identity = 22/33 (66.67%), Postives = 29/33 (87.88%), Query Frame = 1 
Query:   19 QYLKNLMLKYLGTDEGEAREHMERAIATVLQFS 117
            +YLKN+++KY+ TD  E +EHME+AIATVLQFS
Sbjct:  402 EYLKNIVVKYMSTDHAEVKEHMEKAIATVLQFS 434
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BLAST of mRNA_H-paniculata_contig53987.12825.1 vs. uniprot
Match: A0A3R8D3U7_9STRA (GRIP domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R8D3U7_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 1.290e-6
Identity = 21/33 (63.64%), Postives = 29/33 (87.88%), Query Frame = 1 
Query:   19 QYLKNLMLKYLGTDEGEAREHMERAIATVLQFS 117
            +YLKN+++KY+ TD+ E +EHME+AIATVL FS
Sbjct:  110 EYLKNIVIKYMSTDQDEVKEHMEKAIATVLNFS 142
[Close]
BLAST of mRNA_H-paniculata_contig53987.12825.1 vs. uniprot
Match: A0A835YNU9_9STRA (GRIP domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNU9_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 2.330e-6
Identity = 24/39 (61.54%), Postives = 31/39 (79.49%), Query Frame = 1 
Query:    1 MSDPKLQYLKNLMLKYLGTDEGEAREHMERAIATVLQFS 117
            + + KL YL+NL+LKYLGTD+  AR +MERA+  VLQFS
Sbjct:  386 VDESKLPYLRNLLLKYLGTDDAIARANMERAMGVVLQFS 424
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BLAST of mRNA_H-paniculata_contig53987.12825.1 vs. uniprot
Match: W4GAX3_9STRA (GRIP domain-containing protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GAX3_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 3.190e-6
Identity = 21/33 (63.64%), Postives = 29/33 (87.88%), Query Frame = 1 
Query:   19 QYLKNLMLKYLGTDEGEAREHMERAIATVLQFS 117
            +YLKN+++KY+ TD+ E +EHME+AIATVL FS
Sbjct:  416 EYLKNIVIKYMSTDQDEVKEHMEKAIATVLNFS 448
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig53987.12825.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LI32_ECTSI1.430e-1690.70GRIP domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A7S2C3B8_9STRA8.430e-1276.92Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2S2V8_9STRA4.080e-1175.00Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S3NPJ7_9STRA9.120e-767.57Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A397FDV0_9STRA1.170e-663.64GRIP domain-containing protein n=3 Tax=Aphanomyces... [more]
A0A397DQM9_9STRA1.170e-663.64GRIP domain-containing protein n=2 Tax=Aphanomyces... [more]
A0A1V9YAK9_9STRA1.250e-666.67GRIP domain-containing protein n=1 Tax=Achlya hypo... [more]
A0A3R8D3U7_9STRA1.290e-663.64GRIP domain-containing protein n=1 Tax=Aphanomyces... [more]
A0A835YNU9_9STRA2.330e-661.54GRIP domain-containing protein n=1 Tax=Tribonema m... [more]
W4GAX3_9STRA3.190e-663.64GRIP domain-containing protein n=2 Tax=Aphanomyces... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig53987contigH-paniculata_contig53987:907..1041 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score82.0
Seed ortholog evalue7.7e-14
Seed eggNOG ortholog2880.D8LI32
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.GRIP domain
EggNOG OGs2CN6M@1,2QU6G@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size135
Cds size135
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930552.263098-CDS-H-paniculata_contig53987:906..10411622930552.263098-CDS-H-paniculata_contig53987:906..1041Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig53987 907..1041 +
1691481344.937445-CDS-H-paniculata_contig53987:906..10411691481344.937445-CDS-H-paniculata_contig53987:906..1041Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig53987 907..1041 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig53987.12825.1prot_H-paniculata_contig53987.12825.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig53987 907..1041 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig53987.12825.1

>prot_H-paniculata_contig53987.12825.1 ID=prot_H-paniculata_contig53987.12825.1|Name=mRNA_H-paniculata_contig53987.12825.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=45bp
MSDPKLQYLKNLMLKYLGTDEGEAREHMERAIATVLQFSEEVRC*
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mRNA from alignment at H-paniculata_contig53987:907..1041+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig53987.12825.1 ID=mRNA_H-paniculata_contig53987.12825.1|Name=mRNA_H-paniculata_contig53987.12825.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=135bp|location=Sequence derived from alignment at H-paniculata_contig53987:907..1041+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGTGACCCGAAGCTTCAATACCTCAAAAACCTGATGCTCAAGTATTT
GGGTACGGATGAGGGCGAAGCGAGGGAGCACATGGAGCGAGCTATCGCGA
CGGTGCTACAATTCTCTGAAGAGGTGCGGTGCTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig53987:907..1041+

>mRNA_H-paniculata_contig53987.12825.1 ID=mRNA_H-paniculata_contig53987.12825.1|Name=mRNA_H-paniculata_contig53987.12825.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=270bp|location=Sequence derived from alignment at H-paniculata_contig53987:907..1041+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGTGACCCGAAGCTTCAATACCTCAAAAACCTGATGCTCAAGTATTT
GGGTACGGATGAGGGCGAAGCGAGGGAGCACATGGAGCGAGCTATCGCGA
CGGTGCTACAATTCTCTGAAGAGGTGCGGTGCTAAATGAGTGACCCGAAG
CTTCAATACCTCAAAAACCTGATGCTCAAGTATTTGGGTACGGATGAGGG
CGAAGCGAGGGAGCACATGGAGCGAGCTATCGCGACGGTGCTACAATTCT
CTGAAGAGGTGCGGTGCTAA
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