prot_H-paniculata_contig53984.12824.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig53984.12824.1
Unique Nameprot_H-paniculata_contig53984.12824.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length110
Homology
BLAST of mRNA_H-paniculata_contig53984.12824.1 vs. uniprot
Match: A0A6H5KJN3_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJN3_9PHAE)

HSP 1 Score: 129 bits (324), Expect = 1.640e-32
Identity = 62/110 (56.36%), Postives = 80/110 (72.73%), Query Frame = 0
Query:    1 LVDSGLPSFLWGEVAYTAAYLANRVPHSALNMDSPFKRLNGVEPDLSHLRVVGARAFVHIEAHTKKLGAKAFGAAMVGYVFNSKGWRLRDAQNRKIAESRNVVFIEIPAA 110
            L DS LPS LWGE+  TA YL+NR PH+AL+  +P+K L G +  L HLRVVGARAFVH E HTKKL ++A+   +VGY  +SK +R+ +AQ R++ ESRNV+FIE   A
Sbjct:  752 LADSTLPSLLWGELMQTAVYLSNRTPHAALHNGTPYKALFGTDAHLGHLRVVGARAFVHEETHTKKLDSRAWEGRLVGYSLDSKSYRIYNAQTRRVRESRNVIFIETTPA 861          
BLAST of mRNA_H-paniculata_contig53984.12824.1 vs. uniprot
Match: A0A6H5J842_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J842_9PHAE)

HSP 1 Score: 129 bits (324), Expect = 1.670e-32
Identity = 62/110 (56.36%), Postives = 80/110 (72.73%), Query Frame = 0
Query:    1 LVDSGLPSFLWGEVAYTAAYLANRVPHSALNMDSPFKRLNGVEPDLSHLRVVGARAFVHIEAHTKKLGAKAFGAAMVGYVFNSKGWRLRDAQNRKIAESRNVVFIEIPAA 110
            L DS LPS LWGE+  TA YL+NR PH+AL+  +P+K L G +  L HLRVVGARAFVH E HTKKL ++A+   +VGY  +SK +R+ +AQ R++ ESRNV+FIE   A
Sbjct:  981 LADSTLPSLLWGELMQTAVYLSNRTPHAALHNGTPYKALFGTDAHLGHLRVVGARAFVHEETHTKKLDSRAWEGRLVGYSLDSKSYRIYNAQTRRVRESRNVIFIETTPA 1090          
BLAST of mRNA_H-paniculata_contig53984.12824.1 vs. uniprot
Match: A0A6H5JYB5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYB5_9PHAE)

HSP 1 Score: 129 bits (323), Expect = 2.240e-32
Identity = 61/106 (57.55%), Postives = 79/106 (74.53%), Query Frame = 0
Query:    1 LVDSGLPSFLWGEVAYTAAYLANRVPHSALNMDSPFKRLNGVEPDLSHLRVVGARAFVHIEAHTKKLGAKAFGAAMVGYVFNSKGWRLRDAQNRKIAESRNVVFIE 106
            L DS LPS LWGE+  TA YL+NR PH+AL+  +P+K L G +  L HLRVVGARAFVH E HTKKL ++A+   +VGY  +SK +R+ +AQ R++ ESRNV+FIE
Sbjct:  658 LADSTLPSLLWGELMQTAVYLSNRTPHAALHNGTPYKALFGTDAHLGHLRVVGARAFVHEETHTKKLDSRAWEGRLVGYSLDSKSYRIYNAQTRRVRESRNVIFIE 763          
BLAST of mRNA_H-paniculata_contig53984.12824.1 vs. uniprot
Match: A0A6H5KMG0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMG0_9PHAE)

HSP 1 Score: 124 bits (312), Expect = 6.120e-31
Identity = 59/106 (55.66%), Postives = 78/106 (73.58%), Query Frame = 0
Query:    1 LVDSGLPSFLWGEVAYTAAYLANRVPHSALNMDSPFKRLNGVEPDLSHLRVVGARAFVHIEAHTKKLGAKAFGAAMVGYVFNSKGWRLRDAQNRKIAESRNVVFIE 106
            L DS LPS LWG++  TA YL+NR PH+AL+  +P+K L G +  L H RVVGARAFVH E HTKKL ++A+   +VGY  +SK +R+ +AQ R++ ESRNV+FIE
Sbjct:    8 LADSTLPSLLWGKLMQTAVYLSNRTPHAALHNGTPYKALFGTDAHLGHPRVVGARAFVHEETHTKKLDSRAWEGRLVGYSLDSKSYRIYNAQTRRVRESRNVIFIE 113          
BLAST of mRNA_H-paniculata_contig53984.12824.1 vs. uniprot
Match: A0A6H5KL37_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL37_9PHAE)

HSP 1 Score: 123 bits (309), Expect = 1.700e-30
Identity = 58/108 (53.70%), Postives = 79/108 (73.15%), Query Frame = 0
Query:    1 LVDSGLPSFLWGEVAYTAAYLANRVPHSALNMDSPFKRLNGVEPDLSHLRVVGARAFVHIEAHTKKLGAKAFGAAMVGYVFNSKGWRLRDAQNRKIAESRNVVFIEIP 108
            L DS LP+FLWGE+  TA YL+NRVPH+AL   +P+K L G +  L HLRV+G+RAFVH E HT+KL  +A+   +VGY  +SK +R+ +++ R++  SRNVVFIE P
Sbjct:  222 LADSTLPNFLWGELIQTAVYLSNRVPHAALQNGTPYKALYGKDAYLGHLRVIGSRAFVHEETHTRKLEHRAWEGRLVGYSMDSKSYRIYNSETRRVRVSRNVVFIETP 329          
BLAST of mRNA_H-paniculata_contig53984.12824.1 vs. uniprot
Match: A0A6H5KNH5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNH5_9PHAE)

HSP 1 Score: 119 bits (298), Expect = 5.240e-29
Identity = 59/110 (53.64%), Postives = 75/110 (68.18%), Query Frame = 0
Query:    1 LVDSGLPSFLWGEVAYTAAYLANRVPHSALNMDSPFKRLNGVEPDLSHLRVVGARAFVHIEAHTKKLGAKAFGAAMVGYVFNSKGWRLRDAQNRKIAESRNVVFIEIPAA 110
            L DS LPS LWGE+  TA YL+NR PH+AL+    +K L G +  L HLRVVGARAFVH E HTKKL ++A    +VGY  +SK +R+ +AQ  ++ ESRN +FIE   A
Sbjct:  197 LADSTLPSLLWGELMQTAVYLSNRTPHAALHNXXXYKALFGTDAHLGHLRVVGARAFVHEETHTKKLDSRACEGRLVGYSLDSKSYRIYNAQTTRVRESRNDIFIETTPA 306          
BLAST of mRNA_H-paniculata_contig53984.12824.1 vs. uniprot
Match: A0A6H5JIN1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIN1_9PHAE)

HSP 1 Score: 118 bits (295), Expect = 1.350e-28
Identity = 56/108 (51.85%), Postives = 77/108 (71.30%), Query Frame = 0
Query:    1 LVDSGLPSFLWGEVAYTAAYLANRVPHSALNMDSPFKRLNGVEPDLSHLRVVGARAFVHIEAHTKKLGAKAFGAAMVGYVFNSKGWRLRDAQNRKIAESRNVVFIEIP 108
            L DS LP+FLWGE+  TA YL+NRVPH AL   +P+K L G +  L HLRV+G+RAFVH E HT+KL  +A+   +VGY  +SK +R+ +++ R++  SR VVFI+ P
Sbjct:  691 LADSTLPNFLWGELIQTAVYLSNRVPHEALQNGTPYKALYGKDAYLGHLRVIGSRAFVHEETHTRKLEHRAWEGRLVGYSMDSKSYRIYNSETRRVRVSRIVVFIKTP 798          
BLAST of mRNA_H-paniculata_contig53984.12824.1 vs. uniprot
Match: A0A6H5JWF9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWF9_9PHAE)

HSP 1 Score: 117 bits (293), Expect = 1.440e-28
Identity = 53/109 (48.62%), Postives = 75/109 (68.81%), Query Frame = 0
Query:    1 LVDSGLPSFLWGEVAYTAAYLANRVPHSALNMDSPFKRLNGVEPDLSHLRVVGARAFVHIEAHTKKLGAKAFGAAMVGYVFNSKGWRLRDAQNRKIAESRNVVFIEIPA 109
            L DSGLP FLWG +  TA YL+NRVPH+AL   +P+K L   + +L HLR +GARAFVH+E HT++L  KA+   + GY  +SK + + + +   + ESRNV+F+E P+
Sbjct:  385 LTDSGLPKFLWGGLMQTAVYLSNRVPHAALGNITPYKALYCKDANLGHLRAIGARAFVHVETHTRELDPKAWEGCLCGYSMDSKSFHIYNPETGNVRESRNVIFVETPS 493          
BLAST of mRNA_H-paniculata_contig53984.12824.1 vs. uniprot
Match: A0A6H5JKW9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKW9_9PHAE)

HSP 1 Score: 114 bits (286), Expect = 2.190e-27
Identity = 56/109 (51.38%), Postives = 78/109 (71.56%), Query Frame = 0
Query:    1 LVDSGLPSFLWGEVAYTAAYLANRVPHSALNMDSPFKRLNGVEPDLSHLRVVGARAFVHIEAHTKKLGAKAFGAAMVGYVFNSKGWRLRDAQNRKIAESRNVVFIEIPA 109
            L DS LP+FLWGE+  TA YL++RVPH+AL   +P+K L G +  L HLRV+G+RAFVH E HT+KL  +A     +GY  +SK +R+ +++ R++  SRNVVFIE P+
Sbjct:  810 LADSTLPNFLWGELIQTAVYLSSRVPHAALQNGTPYKALYGKDAYLGHLRVIGSRAFVHEETHTRKLEHRAR-EGRLGYSMDSKSYRIYNSETRRVRVSRNVVFIETPS 917          
BLAST of mRNA_H-paniculata_contig53984.12824.1 vs. uniprot
Match: A0A6H5KF63_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF63_9PHAE)

HSP 1 Score: 109 bits (273), Expect = 2.060e-26
Identity = 54/108 (50.00%), Postives = 70/108 (64.81%), Query Frame = 0
Query:    1 LVDSGLPSFLWGEVAYTAAYLANRVPHSALNMDSPFKRLNGVEPDLSHLRVVGARAFVHIEAHTKKLGAKAFGAAMVGYVFNSKGWRLRDAQNRKIAESRNVVFIEIP 108
            L D   P  +WGE+  TAAYL NR PHSAL   +P+ +L+   PDLS LRV+GARAFVH E + KKL  +AF   + G+  +S+ +R+ D  N  + ESRNV FIE P
Sbjct:  178 LKDGDFPPSMWGEIMLTAAYLLNRSPHSALGGATPYSKLHNKSPDLSGLRVIGARAFVHHERYRKKLDDRAFEGKLCGFGLDSQTYRVLDPSNGAVVESRNVTFIESP 285          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig53984.12824.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KJN3_9PHAE1.640e-3256.36Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5J842_9PHAE1.670e-3256.36Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5JYB5_9PHAE2.240e-3257.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KMG0_9PHAE6.120e-3155.66Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KL37_9PHAE1.700e-3053.70Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KNH5_9PHAE5.240e-2953.64Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JIN1_9PHAE1.350e-2851.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JWF9_9PHAE1.440e-2848.62Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JKW9_9PHAE2.190e-2751.38Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KF63_9PHAE2.060e-2650.00Integrase catalytic domain-containing protein (Fra... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 3..106
NoneNo IPR availablePANTHERPTHR11439:SF265coord: 3..106

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig53984contigH-paniculata_contig53984:2..331 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig53984.12824.1mRNA_H-paniculata_contig53984.12824.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig53984 2..331 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig53984.12824.1 ID=prot_H-paniculata_contig53984.12824.1|Name=mRNA_H-paniculata_contig53984.12824.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=110bp
LVDSGLPSFLWGEVAYTAAYLANRVPHSALNMDSPFKRLNGVEPDLSHLR
VVGARAFVHIEAHTKKLGAKAFGAAMVGYVFNSKGWRLRDAQNRKIAESR
NVVFIEIPAA
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR039537Retrotran_Ty1/copia-like