mRNA_H-paniculata_contig53984.12824.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig53984.12824.1
Unique NamemRNA_H-paniculata_contig53984.12824.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig53984.12824.1 vs. uniprot
Match: A0A6H5KJN3_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJN3_9PHAE)

HSP 1 Score: 129 bits (324), Expect = 1.640e-32
Identity = 62/110 (56.36%), Postives = 80/110 (72.73%), Query Frame = 1 
Query:    1 LVDSGLPSFLWGEVAYTAAYLANRVPHSALNMDSPFKRLNGVEPDLSHLRVVGARAFVHIEAHTKKLGAKAFGAAMVGYVFNSKGWRLRDAQNRKIAESRNVVFIEIPAA 330
            L DS LPS LWGE+  TA YL+NR PH+AL+  +P+K L G +  L HLRVVGARAFVH E HTKKL ++A+   +VGY  +SK +R+ +AQ R++ ESRNV+FIE   A
Sbjct:  752 LADSTLPSLLWGELMQTAVYLSNRTPHAALHNGTPYKALFGTDAHLGHLRVVGARAFVHEETHTKKLDSRAWEGRLVGYSLDSKSYRIYNAQTRRVRESRNVIFIETTPA 861
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BLAST of mRNA_H-paniculata_contig53984.12824.1 vs. uniprot
Match: A0A6H5J842_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J842_9PHAE)

HSP 1 Score: 129 bits (324), Expect = 1.670e-32
Identity = 62/110 (56.36%), Postives = 80/110 (72.73%), Query Frame = 1 
Query:    1 LVDSGLPSFLWGEVAYTAAYLANRVPHSALNMDSPFKRLNGVEPDLSHLRVVGARAFVHIEAHTKKLGAKAFGAAMVGYVFNSKGWRLRDAQNRKIAESRNVVFIEIPAA 330
            L DS LPS LWGE+  TA YL+NR PH+AL+  +P+K L G +  L HLRVVGARAFVH E HTKKL ++A+   +VGY  +SK +R+ +AQ R++ ESRNV+FIE   A
Sbjct:  981 LADSTLPSLLWGELMQTAVYLSNRTPHAALHNGTPYKALFGTDAHLGHLRVVGARAFVHEETHTKKLDSRAWEGRLVGYSLDSKSYRIYNAQTRRVRESRNVIFIETTPA 1090
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BLAST of mRNA_H-paniculata_contig53984.12824.1 vs. uniprot
Match: A0A6H5JYB5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYB5_9PHAE)

HSP 1 Score: 129 bits (323), Expect = 2.240e-32
Identity = 61/106 (57.55%), Postives = 79/106 (74.53%), Query Frame = 1 
Query:    1 LVDSGLPSFLWGEVAYTAAYLANRVPHSALNMDSPFKRLNGVEPDLSHLRVVGARAFVHIEAHTKKLGAKAFGAAMVGYVFNSKGWRLRDAQNRKIAESRNVVFIE 318
            L DS LPS LWGE+  TA YL+NR PH+AL+  +P+K L G +  L HLRVVGARAFVH E HTKKL ++A+   +VGY  +SK +R+ +AQ R++ ESRNV+FIE
Sbjct:  658 LADSTLPSLLWGELMQTAVYLSNRTPHAALHNGTPYKALFGTDAHLGHLRVVGARAFVHEETHTKKLDSRAWEGRLVGYSLDSKSYRIYNAQTRRVRESRNVIFIE 763
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BLAST of mRNA_H-paniculata_contig53984.12824.1 vs. uniprot
Match: A0A6H5KMG0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMG0_9PHAE)

HSP 1 Score: 124 bits (312), Expect = 6.120e-31
Identity = 59/106 (55.66%), Postives = 78/106 (73.58%), Query Frame = 1 
Query:    1 LVDSGLPSFLWGEVAYTAAYLANRVPHSALNMDSPFKRLNGVEPDLSHLRVVGARAFVHIEAHTKKLGAKAFGAAMVGYVFNSKGWRLRDAQNRKIAESRNVVFIE 318
            L DS LPS LWG++  TA YL+NR PH+AL+  +P+K L G +  L H RVVGARAFVH E HTKKL ++A+   +VGY  +SK +R+ +AQ R++ ESRNV+FIE
Sbjct:    8 LADSTLPSLLWGKLMQTAVYLSNRTPHAALHNGTPYKALFGTDAHLGHPRVVGARAFVHEETHTKKLDSRAWEGRLVGYSLDSKSYRIYNAQTRRVRESRNVIFIE 113
[Close]
BLAST of mRNA_H-paniculata_contig53984.12824.1 vs. uniprot
Match: A0A6H5KL37_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL37_9PHAE)

HSP 1 Score: 123 bits (309), Expect = 1.700e-30
Identity = 58/108 (53.70%), Postives = 79/108 (73.15%), Query Frame = 1 
Query:    1 LVDSGLPSFLWGEVAYTAAYLANRVPHSALNMDSPFKRLNGVEPDLSHLRVVGARAFVHIEAHTKKLGAKAFGAAMVGYVFNSKGWRLRDAQNRKIAESRNVVFIEIP 324
            L DS LP+FLWGE+  TA YL+NRVPH+AL   +P+K L G +  L HLRV+G+RAFVH E HT+KL  +A+   +VGY  +SK +R+ +++ R++  SRNVVFIE P
Sbjct:  222 LADSTLPNFLWGELIQTAVYLSNRVPHAALQNGTPYKALYGKDAYLGHLRVIGSRAFVHEETHTRKLEHRAWEGRLVGYSMDSKSYRIYNSETRRVRVSRNVVFIETP 329
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BLAST of mRNA_H-paniculata_contig53984.12824.1 vs. uniprot
Match: A0A6H5KNH5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNH5_9PHAE)

HSP 1 Score: 119 bits (298), Expect = 5.240e-29
Identity = 59/110 (53.64%), Postives = 75/110 (68.18%), Query Frame = 1 
Query:    1 LVDSGLPSFLWGEVAYTAAYLANRVPHSALNMDSPFKRLNGVEPDLSHLRVVGARAFVHIEAHTKKLGAKAFGAAMVGYVFNSKGWRLRDAQNRKIAESRNVVFIEIPAA 330
            L DS LPS LWGE+  TA YL+NR PH+AL+    +K L G +  L HLRVVGARAFVH E HTKKL ++A    +VGY  +SK +R+ +AQ  ++ ESRN +FIE   A
Sbjct:  197 LADSTLPSLLWGELMQTAVYLSNRTPHAALHNXXXYKALFGTDAHLGHLRVVGARAFVHEETHTKKLDSRACEGRLVGYSLDSKSYRIYNAQTTRVRESRNDIFIETTPA 306
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BLAST of mRNA_H-paniculata_contig53984.12824.1 vs. uniprot
Match: A0A6H5JIN1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIN1_9PHAE)

HSP 1 Score: 118 bits (295), Expect = 1.350e-28
Identity = 56/108 (51.85%), Postives = 77/108 (71.30%), Query Frame = 1 
Query:    1 LVDSGLPSFLWGEVAYTAAYLANRVPHSALNMDSPFKRLNGVEPDLSHLRVVGARAFVHIEAHTKKLGAKAFGAAMVGYVFNSKGWRLRDAQNRKIAESRNVVFIEIP 324
            L DS LP+FLWGE+  TA YL+NRVPH AL   +P+K L G +  L HLRV+G+RAFVH E HT+KL  +A+   +VGY  +SK +R+ +++ R++  SR VVFI+ P
Sbjct:  691 LADSTLPNFLWGELIQTAVYLSNRVPHEALQNGTPYKALYGKDAYLGHLRVIGSRAFVHEETHTRKLEHRAWEGRLVGYSMDSKSYRIYNSETRRVRVSRIVVFIKTP 798
[Close]
BLAST of mRNA_H-paniculata_contig53984.12824.1 vs. uniprot
Match: A0A6H5JWF9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWF9_9PHAE)

HSP 1 Score: 117 bits (293), Expect = 1.440e-28
Identity = 53/109 (48.62%), Postives = 75/109 (68.81%), Query Frame = 1 
Query:    1 LVDSGLPSFLWGEVAYTAAYLANRVPHSALNMDSPFKRLNGVEPDLSHLRVVGARAFVHIEAHTKKLGAKAFGAAMVGYVFNSKGWRLRDAQNRKIAESRNVVFIEIPA 327
            L DSGLP FLWG +  TA YL+NRVPH+AL   +P+K L   + +L HLR +GARAFVH+E HT++L  KA+   + GY  +SK + + + +   + ESRNV+F+E P+
Sbjct:  385 LTDSGLPKFLWGGLMQTAVYLSNRVPHAALGNITPYKALYCKDANLGHLRAIGARAFVHVETHTRELDPKAWEGCLCGYSMDSKSFHIYNPETGNVRESRNVIFVETPS 493
[Close]
BLAST of mRNA_H-paniculata_contig53984.12824.1 vs. uniprot
Match: A0A6H5JKW9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKW9_9PHAE)

HSP 1 Score: 114 bits (286), Expect = 2.190e-27
Identity = 56/109 (51.38%), Postives = 78/109 (71.56%), Query Frame = 1 
Query:    1 LVDSGLPSFLWGEVAYTAAYLANRVPHSALNMDSPFKRLNGVEPDLSHLRVVGARAFVHIEAHTKKLGAKAFGAAMVGYVFNSKGWRLRDAQNRKIAESRNVVFIEIPA 327
            L DS LP+FLWGE+  TA YL++RVPH+AL   +P+K L G +  L HLRV+G+RAFVH E HT+KL  +A     +GY  +SK +R+ +++ R++  SRNVVFIE P+
Sbjct:  942 LADSTLPNFLWGELIQTAVYLSSRVPHAALQNGTPYKALYGKDAYLGHLRVIGSRAFVHEETHTRKLEHRAR-EGRLGYSMDSKSYRIYNSETRRVRVSRNVVFIETPS 1049
[Close]
BLAST of mRNA_H-paniculata_contig53984.12824.1 vs. uniprot
Match: A0A6H5KF63_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF63_9PHAE)

HSP 1 Score: 109 bits (273), Expect = 2.060e-26
Identity = 54/108 (50.00%), Postives = 70/108 (64.81%), Query Frame = 1 
Query:    1 LVDSGLPSFLWGEVAYTAAYLANRVPHSALNMDSPFKRLNGVEPDLSHLRVVGARAFVHIEAHTKKLGAKAFGAAMVGYVFNSKGWRLRDAQNRKIAESRNVVFIEIP 324
            L D   P  +WGE+  TAAYL NR PHSAL   +P+ +L+   PDLS LRV+GARAFVH E + KKL  +AF   + G+  +S+ +R+ D  N  + ESRNV FIE P
Sbjct:  178 LKDGDFPPSMWGEIMLTAAYLLNRSPHSALGGATPYSKLHNKSPDLSGLRVIGARAFVHHERYRKKLDDRAFEGKLCGFGLDSQTYRVLDPSNGAVVESRNVTFIESP 285
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig53984.12824.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KJN3_9PHAE1.640e-3256.36Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5J842_9PHAE1.670e-3256.36Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5JYB5_9PHAE2.240e-3257.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KMG0_9PHAE6.120e-3155.66Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KL37_9PHAE1.700e-3053.70Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KNH5_9PHAE5.240e-2953.64Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JIN1_9PHAE1.350e-2851.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JWF9_9PHAE1.440e-2848.62Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JKW9_9PHAE2.190e-2751.38Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KF63_9PHAE2.060e-2650.00Integrase catalytic domain-containing protein (Fra... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig53984contigH-paniculata_contig53984:2..331 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score87.8
Seed ortholog evalue3.4e-15
Seed eggNOG ortholog7425.NV31204-PA
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Integrase core domain
EggNOG OGs396RZ@33154,3CB3X@33208,3DSCH@33213,3SU2P@50557,428FP@6656,46MPY@7399,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelHymenoptera
Best eggNOG OGNA|NA|NA
Exons1
Model size330
Cds size330
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930552.223465-CDS-H-paniculata_contig53984:1..3311622930552.223465-CDS-H-paniculata_contig53984:1..331Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig53984 2..331 +
1691481344.9264905-CDS-H-paniculata_contig53984:1..3311691481344.9264905-CDS-H-paniculata_contig53984:1..331Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig53984 2..331 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig53984.12824.1prot_H-paniculata_contig53984.12824.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig53984 2..331 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig53984.12824.1

>prot_H-paniculata_contig53984.12824.1 ID=prot_H-paniculata_contig53984.12824.1|Name=mRNA_H-paniculata_contig53984.12824.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=110bp
LVDSGLPSFLWGEVAYTAAYLANRVPHSALNMDSPFKRLNGVEPDLSHLR
VVGARAFVHIEAHTKKLGAKAFGAAMVGYVFNSKGWRLRDAQNRKIAESR
NVVFIEIPAA
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mRNA from alignment at H-paniculata_contig53984:2..331+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig53984.12824.1 ID=mRNA_H-paniculata_contig53984.12824.1|Name=mRNA_H-paniculata_contig53984.12824.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=330bp|location=Sequence derived from alignment at H-paniculata_contig53984:2..331+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTGGTCGACAGCGGGCTTCCCTCTTTTCTCTGGGGAGAAGTGGCCTACAC
GGCTGCTTATCTGGCTAACCGAGTTCCACACTCTGCTCTCAATATGGATT
CCCCCTTTAAACGCCTCAACGGTGTCGAGCCCGACCTGTCACATCTTCGT
GTGGTCGGGGCACGTGCTTTCGTACACATCGAAGCGCACACCAAGAAGCT
TGGGGCTAAGGCGTTTGGGGCGGCCATGGTGGGGTATGTATTCAACAGCA
AAGGTTGGAGACTGCGGGATGCCCAAAATAGGAAAATCGCTGAAAGCAGG
AATGTCGTCTTCATCGAAATTCCAGCAGCT
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Coding sequence (CDS) from alignment at H-paniculata_contig53984:2..331+

>mRNA_H-paniculata_contig53984.12824.1 ID=mRNA_H-paniculata_contig53984.12824.1|Name=mRNA_H-paniculata_contig53984.12824.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=660bp|location=Sequence derived from alignment at H-paniculata_contig53984:2..331+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTGGTCGACAGCGGGCTTCCCTCTTTTCTCTGGGGAGAAGTGGCCTACAC
GGCTGCTTATCTGGCTAACCGAGTTCCACACTCTGCTCTCAATATGGATT
CCCCCTTTAAACGCCTCAACGGTGTCGAGCCCGACCTGTCACATCTTCGT
GTGGTCGGGGCACGTGCTTTCGTACACATCGAAGCGCACACCAAGAAGCT
TGGGGCTAAGGCGTTTGGGGCGGCCATGGTGGGGTATGTATTCAACAGCA
AAGGTTGGAGACTGCGGGATGCCCAAAATAGGAAAATCGCTGAAAGCAGG
AATGTCGTCTTCATCGAAATTCCAGCAGCTCTGGTCGACAGCGGGCTTCC
CTCTTTTCTCTGGGGAGAAGTGGCCTACACGGCTGCTTATCTGGCTAACC
GAGTTCCACACTCTGCTCTCAATATGGATTCCCCCTTTAAACGCCTCAAC
GGTGTCGAGCCCGACCTGTCACATCTTCGTGTGGTCGGGGCACGTGCTTT
CGTACACATCGAAGCGCACACCAAGAAGCTTGGGGCTAAGGCGTTTGGGG
CGGCCATGGTGGGGTATGTATTCAACAGCAAAGGTTGGAGACTGCGGGAT
GCCCAAAATAGGAAAATCGCTGAAAGCAGGAATGTCGTCTTCATCGAAAT
TCCAGCAGCT
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