mRNA_H-paniculata_contig5374.12798.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5374.12798.1
Unique NamemRNA_H-paniculata_contig5374.12798.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5374.12798.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5374contigH-paniculata_contig5374:9155..10630 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size190
Cds size189
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930548.8127048-CDS-H-paniculata_contig5374:9154..92971622930548.8127048-CDS-H-paniculata_contig5374:9154..9297Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5374 9155..9297 -
1691481343.557321-CDS-H-paniculata_contig5374:9154..92971691481343.557321-CDS-H-paniculata_contig5374:9154..9297Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5374 9155..9297 -
1622930548.8316913-CDS-H-paniculata_contig5374:10584..106301622930548.8316913-CDS-H-paniculata_contig5374:10584..10630Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5374 10585..10630 -
1691481343.5656297-CDS-H-paniculata_contig5374:10584..106301691481343.5656297-CDS-H-paniculata_contig5374:10584..10630Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5374 10585..10630 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5374.12798.1prot_H-paniculata_contig5374.12798.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5374 9155..10630 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5374.12798.1

>prot_H-paniculata_contig5374.12798.1 ID=prot_H-paniculata_contig5374.12798.1|Name=mRNA_H-paniculata_contig5374.12798.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=63bp
MGSRTAPPTAGHPPEGGIRHRPGDHRQGARPPAARRETREEQETHVRDSF
RASLLDLPSEWYP
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mRNA from alignment at H-paniculata_contig5374:9155..10630-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5374.12798.1 ID=mRNA_H-paniculata_contig5374.12798.1|Name=mRNA_H-paniculata_contig5374.12798.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1476bp|location=Sequence derived from alignment at H-paniculata_contig5374:9155..10630- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGAAGTCGCACTGCCCCTCCAACAGCAGGTCATCCGCCAGAAGGTAA
GGATCGAACAGGGGCAGAGGGAGCTCCATGCTATGGAGAAGTTGGACGCT
ACGGTGATGAATAGGAAGAAGCAGCAGGAGAAGGCCCACGCAACTTTAAC
TAGACAGGTCCGCACCGACATTAGCAGCAGCAGCAGACGCTTCCCTCAGT
TGCTTTTGGCAACATCCTGTAATGAATTTTATTCCTCCGGTCTTCCTTTC
TCCATGTGCATTTAGCGAATTCGTTTCTTTACGCCGCCGCCGCCGCCGCA
GCAGCAGCAGCAGCAGCAGCAGCAGTGCTGCTTTAGCTGCTGCTGCTTGT
GAAAAGGCTCCTATATCCCTCTGTGATATGGTTCACACGTGGATTATTAG
TTATAGTTATCCTCTAAGACTCACGTTTATTAGCTCTCCCAGTTCTCTTT
GACGCCAAACCCAAACGTTTGCGTGGCAGTGATCACCCACGGGGAGCGAT
CATCCTCATGCAGGAACTACAGCTACATATTATAGTTGCTGCGTAAACCA
CGGCATTCTCTTCTCAAACCCGGAATCATCTCAACCGATACAAAACCACG
TGAAACCGTGAAAGACATATATGCTGGTTCTGGTGGAACCGGCACAAGAT
TTCAATAACCACGCTAAGAAGAATGTTGTCTTCCTACTCAAGCTGCTGCC
GTCTCTAACCCTTATGACATGCTGCTATTTCAGCTACTACTGCGTGTGTA
TGTATGATTCACACCAGGAGTGCAACTGCTTTAGATAACAGCAGCAGCAG
ACTGCTGTATTCGCCAGCAGCACCCAGGTGCTCACTTTGTACATTGTACA
CTTGATTTTTTTTTATTGACTCGCTCGACATCTTTTTGCCCATTGTATAT
GCCTTATGCGAATGAATCATTTTGACACCGCCGCTATAGCAGCAGCAGCA
GCAGCAGCAGCAACTGCTGCTGCTGCTGCTATTGCTGCTGGTAGTACGTG
TGGGTGTATGATTCACGTCAGCATTGCAATAGCTGTAGAGCACAGCAGCA
GCAGACTGCTCTATGCGCCAACAGCACGCAGGTGCTCATTTTGTACATTG
TTAACTTGGCGTTTAAAAGAAAAATGGAGCCGTTCGACATTCTGGACGAT
CACATGTGTACGGCTATCTTGATTTTGAAGCCGCCGCCGCTCCTGCTGTC
TGCTTTGGTTAACCTGTTCTTTCCGTAGTCAAGGCGGAACCTCCGACAGT
AAACGAAGATCGAAGCTCTGTCCTCTGAGGTTGAACTGCTGAAATTTGAA
GCCCCTGCTGCCCCCGCGATCGAACCGCACCAGGAGGAATTCGACATAGA
CCGGGCGATCACCGACAGGGTGCTCGACCGCCTGCGGCCCGTCGAGAAAC
CCGAGAAGAGCAAGAAACACACGTACGGGATAGTTTCCGCGCGTCTTTGC
TAGACCTACCTTCAGAGTGGTATCCC
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Coding sequence (CDS) from alignment at H-paniculata_contig5374:9155..10630-

>mRNA_H-paniculata_contig5374.12798.1 ID=mRNA_H-paniculata_contig5374.12798.1|Name=mRNA_H-paniculata_contig5374.12798.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=378bp|location=Sequence derived from alignment at H-paniculata_contig5374:9155..10630- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGAAGTCGCACTGCCCCTCCAACAGCAGGTCATCCGCCAGAAGATGG
GAAGTCGCACTGCCCCTCCAACAGCAGGTCATCCGCCAGAAGGAGGAATT
CGACATAGACCGGGCGATCACCGACAGGGTGCTCGACCGCCTGCGGCCCG
TCGAGAAACCCGAGAAGAGCAAGAAACACACGTACGGGATAGTTTCCGCG
CGTCTTTGCTAGACCTACCTTCAGAGTGGTATCCCGAGGAATTCGACATA
GACCGGGCGATCACCGACAGGGTGCTCGACCGCCTGCGGCCCGTCGAGAA
ACCCGAGAAGAGCAAGAAACACACGTACGGGATAGTTTCCGCGCGTCTTT
GCTAGACCTACCTTCAGAGTGGTATCCC
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