prot_H-paniculata_contig53715.12795.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig53715.12795.1
Unique Nameprot_H-paniculata_contig53715.12795.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length209
Homology
BLAST of mRNA_H-paniculata_contig53715.12795.1 vs. uniprot
Match: A0A176WFF8_MARPO (CCHC-type domain-containing protein n=1 Tax=Marchantia polymorpha subsp. ruderalis TaxID=1480154 RepID=A0A176WFF8_MARPO)

HSP 1 Score: 65.1 bits (157), Expect = 6.480e-9
Identity = 35/111 (31.53%), Postives = 62/111 (55.86%), Query Frame = 0
Query:  100 WICDNGATKHMTHDSHFLFDYQEC-DGRVRLADGNRLPIEGVGMLFLQFRFDSEVVLMKLTQVAFIPLLSHHLLSLGKFADFGHEYRCSREGLRINLKTGRVLSAERFGSL 209
            WI D+G T HMTH+ H+L DYQE  +G+V + + +   + G+G + ++    ++ V+  L  V ++P LS +L+S+G   D G+  +  +  + I  K   +L   + G L
Sbjct:  142 WILDSGCTYHMTHNKHWLSDYQELNEGKVIMGNNHSCSVAGIGSVSIKM---ADGVVRILENVRWVPELSRNLISIGILDDLGYTNKIEQGSMYI-AKGATILKGMKIGGL 248          
BLAST of mRNA_H-paniculata_contig53715.12795.1 vs. uniprot
Match: A0A225WMA1_9STRA (CCHC-type domain-containing protein (Fragment) n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WMA1_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 5.350e-6
Identity = 33/113 (29.20%), Postives = 59/113 (52.21%), Query Frame = 0
Query:   98 EIWICDNGATKHMTHDSHFLFDYQECDGRVRLADGNRLPIEGVGMLFLQFRFDSEVVLMKLTQVAFIPLLSHHLLSLGKFADFGHE--YRCSREGLRINLKTGRVLSAERFGS 208
            +IWI DNG+++H+ +D+ +L D +ECD +    +G  L I   G + L+        +++L+ V F   + H+L+S G+    G+   +R  R    ++     VL+ E  GS
Sbjct:  292 DIWILDNGSSRHLVNDASYLDDVEECDDQCVQPNGEPLAISMKGSVTLRVAACGVEQVVRLSNVYFAKNVVHNLISYGQLDKVGYPLAHRAERRSKPLSEVNMAVLNEEVNGS 404          
BLAST of mRNA_H-paniculata_contig53715.12795.1 vs. uniprot
Match: A0A8D9D973_BRACM ((field mustard) hypothetical protein (Fragment) n=1 Tax=Brassica campestris TaxID=3711 RepID=A0A8D9D973_BRACM)

HSP 1 Score: 56.6 bits (135), Expect = 6.730e-6
Identity = 44/141 (31.21%), Postives = 74/141 (52.48%), Query Frame = 0
Query:   63 DEFIAAYIASTSTTGKEGVLSVDSEGLEYREVGGMEIWICDNGATKHMTHDSHFLFDYQECDGRVRLADGNRLPIEGVGMLFLQFRFDSEVVLMKLTQVAFIPLLSHHLLSLGKFA-DFGHEYRCSREGLRI-NLKTGRVL 201
            DEF+  Y+ + +TT ++G  +  S     + +      I D+GA+ HM  D   + D ++  G V +A+G+R+PIEGVG L L   FD +      +   ++P  + +LLS+ K   D G +     + +   +LKTGRV+
Sbjct:  279 DEFVK-YVYALATTRRQGAPAKAS--TSNKPI------IVDSGASHHMISDRSLMSDVKKATGGVMIANGDRIPIEGVGKLKL---FDKD------SDAFYMPQFASNLLSVRKATIDLGCQVVFRPDDVEFQDLKTGRVI 401          
BLAST of mRNA_H-paniculata_contig53715.12795.1 vs. uniprot
Match: A0A6G0WQ54_9STRA (Integrase catalytic domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WQ54_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 7.490e-6
Identity = 30/93 (32.26%), Postives = 51/93 (54.84%), Query Frame = 0
Query:  101 ICDNGATKHMTHDSHFLFDYQECDGRVRLADGNRLPIEGVGMLFLQFRFDSEVVLMKLTQVAFIPLLSHHLLSLGKFADFGHEYRCSREGLRI 193
            I D+GAT H   D  +    +   G+VR+A+G+ + IEG G + L+    S +V +++T V +IP +  +L SL +   +G   + S+ G  I
Sbjct:  233 ILDSGATDHYCKDISWFTTLEPFTGKVRVANGDDMNIEGRGTIELEMNTPSGIVPIRMTDVMYIPSIQFNLFSLSRVIRYGFCTKFSKHGCII 325          
BLAST of mRNA_H-paniculata_contig53715.12795.1 vs. uniprot
Match: A0A6A4Z1R3_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4Z1R3_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 1.230e-5
Identity = 40/143 (27.97%), Postives = 66/143 (46.15%), Query Frame = 0
Query:   62 EDEFIAAYIASTSTTGKEGVLSVDSEGLEYREVGGMEIWICDNGATKHMTHDSHFLFDYQECDGRVRLADGNRLPIEGVGMLFLQFRFDSEVVLMKLTQVAFIPLLSHHLLSLGKFADFGHEYRCSREGLRINLKTGRVLSAE 204
            ED F      S    G E  + + +   +    G  ++ I D+GA+ HMT   + LFD +EC  +VRLA+  R+ ++ +G   ++    S  V    T V ++P L H L+S+              +G   ++K G  +SAE
Sbjct:   59 EDIFFLNEGGSDEEIGSEVKIDMLNLNEDTNHNGEEQMTIIDSGASSHMTGYYNILFDIEECQRQVRLANHQRIDVDKMGKFKIKNPNGSTCVF---TNVLYVPTLHHTLVSVPALTS-KERVTVQYKGKTCSIKVGDRVSAE 197          
BLAST of mRNA_H-paniculata_contig53715.12795.1 vs. uniprot
Match: UPI00142D92C5 (uncharacterized protein LOC117131646 n=1 Tax=Brassica campestris TaxID=3711 RepID=UPI00142D92C5)

HSP 1 Score: 55.1 bits (131), Expect = 2.030e-5
Identity = 44/141 (31.21%), Postives = 73/141 (51.77%), Query Frame = 0
Query:   63 DEFIAAYIASTSTTGKEGVLSVDSEGLEYREVGGMEIWICDNGATKHMTHDSHFLFDYQECDGRVRLADGNRLPIEGVGMLFLQFRFDSEVVLMKLTQVAFIPLLSHHLLSLGKFA-DFGHEYRCSREGLRI-NLKTGRVL 201
            DEF+  Y+ + +TT ++G  +  S     + +      I D GA+ HM  D   + D ++  G V +A+G+R+PIEGVG L L   FD +      +   ++P  + +LLS+ K   D G +     + +   +LKTGRV+
Sbjct:  235 DEFVK-YVYALATTRRQGAPAKAS--TSNKPI------IVDFGASHHMISDRSLMSDVKKATGGVMIANGDRIPIEGVGKLKL---FDKD------SDAFYMPQFASNLLSVRKATIDLGCQVVFRPDDVEFQDLKTGRVI 357          
BLAST of mRNA_H-paniculata_contig53715.12795.1 vs. uniprot
Match: A0A176VSR8_MARPO (CCHC-type domain-containing protein n=1 Tax=Marchantia polymorpha subsp. ruderalis TaxID=1480154 RepID=A0A176VSR8_MARPO)

HSP 1 Score: 54.7 bits (130), Expect = 2.490e-5
Identity = 33/109 (30.28%), Postives = 59/109 (54.13%), Query Frame = 0
Query:  100 WICDNGATKHMTHDSHFLFDYQECDG-RVRLADGNRLPIEGVGMLFLQFRFDSEVVLMKLTQVAFIPLLSHHLLSLGKFADFGHEYRCSREGLRINLKTGRVLSAERFG 207
            WI D+G T HMTH+ H+L DYQE +  +V +++ +   + G+G + ++     +VV+  L  V ++P L  +L+S+G   D  +  +  +  + I  K   VL   + G
Sbjct:  170 WILDSGCTYHMTHNKHWLSDYQELNEMKVLMSNNHSCLVVGIGSVCIKM---VDVVVRILENVRWVPELYINLISIGILDDLDYISKIEQVSMYI-AKGATVLKGMKIG 274          
BLAST of mRNA_H-paniculata_contig53715.12795.1 vs. uniprot
Match: Q9SJT2_ARATH (Putative retroelement pol polyprotein n=1 Tax=Arabidopsis thaliana TaxID=3702 RepID=Q9SJT2_ARATH)

HSP 1 Score: 54.3 bits (129), Expect = 4.730e-5
Identity = 35/126 (27.78%), Postives = 61/126 (48.41%), Query Frame = 0
Query:   86 SEGLEYREVGGMEIWICDNGATKHMTHDSHFLFDYQE-CDGRVRLADGNRLPIEGVGMLFLQFRFDSEV-VLMKLTQVAFIPLLSHHLLSLGKFADFGHEYRCSREGLRINLKTGRVLSAERFGSL 209
            SE L   ++   + W+ D G + HMT+   +  D  E   G VR+ +     + G+G +    R  +E  ++++LT V +IP +  +LLSLG F   G+ ++     L I      +L+  R  +L
Sbjct:  273 SEALSSTDIHLEDEWVMDTGCSYHMTYKREWFEDLNEDAGGSVRMGNKTVSKVRGIGTI----RVKNEAGMVVRLTNVRYIPEMDRNLLSLGTFEKSGYSFKLENGTLSIIAGDSVLLTVRRCYTL 394          
BLAST of mRNA_H-paniculata_contig53715.12795.1 vs. uniprot
Match: UPI00142DACCE (uncharacterized protein LOC117127346 n=1 Tax=Brassica campestris TaxID=3711 RepID=UPI00142DACCE)

HSP 1 Score: 53.9 bits (128), Expect = 4.860e-5
Identity = 42/145 (28.97%), Postives = 75/145 (51.72%), Query Frame = 0
Query:   63 DEFIAAYIASTSTTGKEGVLSVDSEGLEYREVGGMEIWICDNGATKHMTHDSHFLFDYQECDGRVRLADGNRLPIEGVGMLFLQFRFDSEVVLMKLTQVAFIPLLSHHLLSLGKFA-DFGHEYRCSREGLRI-NLKTGRVLSAER 205
            DEF+  Y+++ +TT ++G  +  S     + +      I D+GA+ HM  D   + D ++  G V +A+G+R+PIEGVG L L   FD +      +   ++P  + +LLS+ K   D G +     + +   +LK+ ++   ER
Sbjct:  279 DEFVK-YVSALATTRRQGAPAKAS--TSNKPI------IVDSGASHHMISDRSLMSDVKKATGGVMIANGDRIPIEGVGKLKL---FDKD------SDAFYMPQFASNLLSVRKATIDLGCQVVFRPDDVEFQDLKSSKMFQLER 405          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig53715.12795.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A176WFF8_MARPO6.480e-931.53CCHC-type domain-containing protein n=1 Tax=Marcha... [more]
A0A225WMA1_9STRA5.350e-629.20CCHC-type domain-containing protein (Fragment) n=1... [more]
A0A8D9D973_BRACM6.730e-631.21(field mustard) hypothetical protein (Fragment) n=... [more]
A0A6G0WQ54_9STRA7.490e-632.26Integrase catalytic domain-containing protein n=1 ... [more]
A0A6A4Z1R3_9STRA1.230e-527.97Uncharacterized protein n=3 Tax=Aphanomyces astaci... [more]
UPI00142D92C52.030e-531.21uncharacterized protein LOC117131646 n=1 Tax=Brass... [more]
A0A176VSR8_MARPO2.490e-530.28CCHC-type domain-containing protein n=1 Tax=Marcha... [more]
Q9SJT2_ARATH4.730e-527.78Putative retroelement pol polyprotein n=1 Tax=Arab... [more]
UPI00142DACCE4.860e-528.97uncharacterized protein LOC117127346 n=1 Tax=Brass... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 43..63
NoneNo IPR availableGENE3D4.10.60.10coord: 1..36
e-value: 5.7E-7
score: 31.2
IPR001878Zinc finger, CCHC-typeSMARTSM00343c2hcfinal6coord: 1..17
e-value: 0.0081
score: 24.1
coord: 19..35
e-value: 3.1
score: 8.2
IPR036875Zinc finger, CCHC-type superfamilySUPERFAMILY57756Retrovirus zinc finger-like domainscoord: 1..36

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig53715contigH-paniculata_contig53715:82..708 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig53715.12795.1mRNA_H-paniculata_contig53715.12795.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig53715 82..708 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig53715.12795.1 ID=prot_H-paniculata_contig53715.12795.1|Name=mRNA_H-paniculata_contig53715.12795.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=209bp
RCFICRSKDHLRRECPNVYCERCGKHGHDLYACPQVTDEYACLAEAETEI
ELEEALKVDLGEDEFIAAYIASTSTTGKEGVLSVDSEGLEYREVGGMEIW
ICDNGATKHMTHDSHFLFDYQECDGRVRLADGNRLPIEGVGMLFLQFRFD
SEVVLMKLTQVAFIPLLSHHLLSLGKFADFGHEYRCSREGLRINLKTGRV
LSAERFGSL
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001878Znf_CCHC
IPR036875Znf_CCHC_sf