mRNA_H-paniculata_contig53715.12795.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig53715.12795.1
Unique NamemRNA_H-paniculata_contig53715.12795.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig53715.12795.1 vs. uniprot
Match: A0A176WFF8_MARPO (CCHC-type domain-containing protein n=1 Tax=Marchantia polymorpha subsp. ruderalis TaxID=1480154 RepID=A0A176WFF8_MARPO)

HSP 1 Score: 65.1 bits (157), Expect = 6.480e-9
Identity = 35/111 (31.53%), Postives = 62/111 (55.86%), Query Frame = 1
Query:  298 WICDNGATKHMTHDSHFLFDYQEC-DGRVRLADGNRLPIEGVGMLFLQFRFDSEVVLMKLTQVAFIPLLSHHLLSLGKFADFGHEYRCSREGLRINLKTGRVLSAERFGSL 627
            WI D+G T HMTH+ H+L DYQE  +G+V + + +   + G+G + ++    ++ V+  L  V ++P LS +L+S+G   D G+  +  +  + I  K   +L   + G L
Sbjct:  142 WILDSGCTYHMTHNKHWLSDYQELNEGKVIMGNNHSCSVAGIGSVSIKM---ADGVVRILENVRWVPELSRNLISIGILDDLGYTNKIEQGSMYI-AKGATILKGMKIGGL 248          
BLAST of mRNA_H-paniculata_contig53715.12795.1 vs. uniprot
Match: A0A225WMA1_9STRA (CCHC-type domain-containing protein (Fragment) n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WMA1_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 5.350e-6
Identity = 33/113 (29.20%), Postives = 59/113 (52.21%), Query Frame = 1
Query:  292 EIWICDNGATKHMTHDSHFLFDYQECDGRVRLADGNRLPIEGVGMLFLQFRFDSEVVLMKLTQVAFIPLLSHHLLSLGKFADFGHE--YRCSREGLRINLKTGRVLSAERFGS 624
            +IWI DNG+++H+ +D+ +L D +ECD +    +G  L I   G + L+        +++L+ V F   + H+L+S G+    G+   +R  R    ++     VL+ E  GS
Sbjct:  292 DIWILDNGSSRHLVNDASYLDDVEECDDQCVQPNGEPLAISMKGSVTLRVAACGVEQVVRLSNVYFAKNVVHNLISYGQLDKVGYPLAHRAERRSKPLSEVNMAVLNEEVNGS 404          
BLAST of mRNA_H-paniculata_contig53715.12795.1 vs. uniprot
Match: A0A8D9D973_BRACM ((field mustard) hypothetical protein (Fragment) n=1 Tax=Brassica campestris TaxID=3711 RepID=A0A8D9D973_BRACM)

HSP 1 Score: 56.6 bits (135), Expect = 6.730e-6
Identity = 44/141 (31.21%), Postives = 74/141 (52.48%), Query Frame = 1
Query:  187 DEFIAAYIASTSTTGKEGVLSVDSEGLEYREVGGMEIWICDNGATKHMTHDSHFLFDYQECDGRVRLADGNRLPIEGVGMLFLQFRFDSEVVLMKLTQVAFIPLLSHHLLSLGKFA-DFGHEYRCSREGLRI-NLKTGRVL 603
            DEF+  Y+ + +TT ++G  +  S     + +      I D+GA+ HM  D   + D ++  G V +A+G+R+PIEGVG L L   FD +      +   ++P  + +LLS+ K   D G +     + +   +LKTGRV+
Sbjct:  279 DEFVK-YVYALATTRRQGAPAKAS--TSNKPI------IVDSGASHHMISDRSLMSDVKKATGGVMIANGDRIPIEGVGKLKL---FDKD------SDAFYMPQFASNLLSVRKATIDLGCQVVFRPDDVEFQDLKTGRVI 401          
BLAST of mRNA_H-paniculata_contig53715.12795.1 vs. uniprot
Match: A0A6G0WQ54_9STRA (Integrase catalytic domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WQ54_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 7.490e-6
Identity = 30/93 (32.26%), Postives = 51/93 (54.84%), Query Frame = 1
Query:  301 ICDNGATKHMTHDSHFLFDYQECDGRVRLADGNRLPIEGVGMLFLQFRFDSEVVLMKLTQVAFIPLLSHHLLSLGKFADFGHEYRCSREGLRI 579
            I D+GAT H   D  +    +   G+VR+A+G+ + IEG G + L+    S +V +++T V +IP +  +L SL +   +G   + S+ G  I
Sbjct:  233 ILDSGATDHYCKDISWFTTLEPFTGKVRVANGDDMNIEGRGTIELEMNTPSGIVPIRMTDVMYIPSIQFNLFSLSRVIRYGFCTKFSKHGCII 325          
BLAST of mRNA_H-paniculata_contig53715.12795.1 vs. uniprot
Match: A0A6A4Z1R3_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4Z1R3_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 1.230e-5
Identity = 40/143 (27.97%), Postives = 66/143 (46.15%), Query Frame = 1
Query:  184 EDEFIAAYIASTSTTGKEGVLSVDSEGLEYREVGGMEIWICDNGATKHMTHDSHFLFDYQECDGRVRLADGNRLPIEGVGMLFLQFRFDSEVVLMKLTQVAFIPLLSHHLLSLGKFADFGHEYRCSREGLRINLKTGRVLSAE 612
            ED F      S    G E  + + +   +    G  ++ I D+GA+ HMT   + LFD +EC  +VRLA+  R+ ++ +G   ++    S  V    T V ++P L H L+S+              +G   ++K G  +SAE
Sbjct:   59 EDIFFLNEGGSDEEIGSEVKIDMLNLNEDTNHNGEEQMTIIDSGASSHMTGYYNILFDIEECQRQVRLANHQRIDVDKMGKFKIKNPNGSTCVF---TNVLYVPTLHHTLVSVPALTS-KERVTVQYKGKTCSIKVGDRVSAE 197          
BLAST of mRNA_H-paniculata_contig53715.12795.1 vs. uniprot
Match: UPI00142D92C5 (uncharacterized protein LOC117131646 n=1 Tax=Brassica campestris TaxID=3711 RepID=UPI00142D92C5)

HSP 1 Score: 55.1 bits (131), Expect = 2.030e-5
Identity = 44/141 (31.21%), Postives = 73/141 (51.77%), Query Frame = 1
Query:  187 DEFIAAYIASTSTTGKEGVLSVDSEGLEYREVGGMEIWICDNGATKHMTHDSHFLFDYQECDGRVRLADGNRLPIEGVGMLFLQFRFDSEVVLMKLTQVAFIPLLSHHLLSLGKFA-DFGHEYRCSREGLRI-NLKTGRVL 603
            DEF+  Y+ + +TT ++G  +  S     + +      I D GA+ HM  D   + D ++  G V +A+G+R+PIEGVG L L   FD +      +   ++P  + +LLS+ K   D G +     + +   +LKTGRV+
Sbjct:  235 DEFVK-YVYALATTRRQGAPAKAS--TSNKPI------IVDFGASHHMISDRSLMSDVKKATGGVMIANGDRIPIEGVGKLKL---FDKD------SDAFYMPQFASNLLSVRKATIDLGCQVVFRPDDVEFQDLKTGRVI 357          
BLAST of mRNA_H-paniculata_contig53715.12795.1 vs. uniprot
Match: A0A176VSR8_MARPO (CCHC-type domain-containing protein n=1 Tax=Marchantia polymorpha subsp. ruderalis TaxID=1480154 RepID=A0A176VSR8_MARPO)

HSP 1 Score: 54.7 bits (130), Expect = 2.490e-5
Identity = 33/109 (30.28%), Postives = 59/109 (54.13%), Query Frame = 1
Query:  298 WICDNGATKHMTHDSHFLFDYQECDG-RVRLADGNRLPIEGVGMLFLQFRFDSEVVLMKLTQVAFIPLLSHHLLSLGKFADFGHEYRCSREGLRINLKTGRVLSAERFG 621
            WI D+G T HMTH+ H+L DYQE +  +V +++ +   + G+G + ++     +VV+  L  V ++P L  +L+S+G   D  +  +  +  + I  K   VL   + G
Sbjct:  170 WILDSGCTYHMTHNKHWLSDYQELNEMKVLMSNNHSCLVVGIGSVCIKM---VDVVVRILENVRWVPELYINLISIGILDDLDYISKIEQVSMYI-AKGATVLKGMKIG 274          
BLAST of mRNA_H-paniculata_contig53715.12795.1 vs. uniprot
Match: Q9SJT2_ARATH (Putative retroelement pol polyprotein n=1 Tax=Arabidopsis thaliana TaxID=3702 RepID=Q9SJT2_ARATH)

HSP 1 Score: 54.3 bits (129), Expect = 4.730e-5
Identity = 35/126 (27.78%), Postives = 61/126 (48.41%), Query Frame = 1
Query:  256 SEGLEYREVGGMEIWICDNGATKHMTHDSHFLFDYQE-CDGRVRLADGNRLPIEGVGMLFLQFRFDSEV-VLMKLTQVAFIPLLSHHLLSLGKFADFGHEYRCSREGLRINLKTGRVLSAERFGSL 627
            SE L   ++   + W+ D G + HMT+   +  D  E   G VR+ +     + G+G +    R  +E  ++++LT V +IP +  +LLSLG F   G+ ++     L I      +L+  R  +L
Sbjct:  273 SEALSSTDIHLEDEWVMDTGCSYHMTYKREWFEDLNEDAGGSVRMGNKTVSKVRGIGTI----RVKNEAGMVVRLTNVRYIPEMDRNLLSLGTFEKSGYSFKLENGTLSIIAGDSVLLTVRRCYTL 394          
BLAST of mRNA_H-paniculata_contig53715.12795.1 vs. uniprot
Match: UPI00142DACCE (uncharacterized protein LOC117127346 n=1 Tax=Brassica campestris TaxID=3711 RepID=UPI00142DACCE)

HSP 1 Score: 53.9 bits (128), Expect = 4.860e-5
Identity = 42/145 (28.97%), Postives = 75/145 (51.72%), Query Frame = 1
Query:  187 DEFIAAYIASTSTTGKEGVLSVDSEGLEYREVGGMEIWICDNGATKHMTHDSHFLFDYQECDGRVRLADGNRLPIEGVGMLFLQFRFDSEVVLMKLTQVAFIPLLSHHLLSLGKFA-DFGHEYRCSREGLRI-NLKTGRVLSAER 615
            DEF+  Y+++ +TT ++G  +  S     + +      I D+GA+ HM  D   + D ++  G V +A+G+R+PIEGVG L L   FD +      +   ++P  + +LLS+ K   D G +     + +   +LK+ ++   ER
Sbjct:  279 DEFVK-YVSALATTRRQGAPAKAS--TSNKPI------IVDSGASHHMISDRSLMSDVKKATGGVMIANGDRIPIEGVGKLKL---FDKD------SDAFYMPQFASNLLSVRKATIDLGCQVVFRPDDVEFQDLKSSKMFQLER 405          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig53715.12795.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A176WFF8_MARPO6.480e-931.53CCHC-type domain-containing protein n=1 Tax=Marcha... [more]
A0A225WMA1_9STRA5.350e-629.20CCHC-type domain-containing protein (Fragment) n=1... [more]
A0A8D9D973_BRACM6.730e-631.21(field mustard) hypothetical protein (Fragment) n=... [more]
A0A6G0WQ54_9STRA7.490e-632.26Integrase catalytic domain-containing protein n=1 ... [more]
A0A6A4Z1R3_9STRA1.230e-527.97Uncharacterized protein n=3 Tax=Aphanomyces astaci... [more]
UPI00142D92C52.030e-531.21uncharacterized protein LOC117131646 n=1 Tax=Brass... [more]
A0A176VSR8_MARPO2.490e-530.28CCHC-type domain-containing protein n=1 Tax=Marcha... [more]
Q9SJT2_ARATH4.730e-527.78Putative retroelement pol polyprotein n=1 Tax=Arab... [more]
UPI00142DACCE4.860e-528.97uncharacterized protein LOC117127346 n=1 Tax=Brass... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig53715contigH-paniculata_contig53715:82..708 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score68.6
Seed ortholog evalue4.1e-09
Seed eggNOG ortholog15368.BRADI3G29820.1
KEGG koko:K20093
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs37THH@33090,3GG2K@35493,3IKX9@38820,3M2IR@4447,COG2801@1,KOG0017@2759
EC3.6.4.12
COG Functional cat.L
Best tax levelPoales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03036
Exons1
Model size627
Cds size627
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930548.4198618-CDS-H-paniculata_contig53715:81..7081622930548.4198618-CDS-H-paniculata_contig53715:81..708Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig53715 82..708 +
1691481343.4418795-CDS-H-paniculata_contig53715:81..7081691481343.4418795-CDS-H-paniculata_contig53715:81..708Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig53715 82..708 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig53715.12795.1prot_H-paniculata_contig53715.12795.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig53715 82..708 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig53715.12795.1

>prot_H-paniculata_contig53715.12795.1 ID=prot_H-paniculata_contig53715.12795.1|Name=mRNA_H-paniculata_contig53715.12795.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=209bp
RCFICRSKDHLRRECPNVYCERCGKHGHDLYACPQVTDEYACLAEAETEI
ELEEALKVDLGEDEFIAAYIASTSTTGKEGVLSVDSEGLEYREVGGMEIW
ICDNGATKHMTHDSHFLFDYQECDGRVRLADGNRLPIEGVGMLFLQFRFD
SEVVLMKLTQVAFIPLLSHHLLSLGKFADFGHEYRCSREGLRINLKTGRV
LSAERFGSL
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mRNA from alignment at H-paniculata_contig53715:82..708+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig53715.12795.1 ID=mRNA_H-paniculata_contig53715.12795.1|Name=mRNA_H-paniculata_contig53715.12795.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=627bp|location=Sequence derived from alignment at H-paniculata_contig53715:82..708+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGTGCTTCATCTGCCGCTCCAAGGATCACCTTCGACGGGAATGCCCCAA CGTGTACTGTGAGCGATGTGGTAAGCATGGTCACGACTTGTACGCATGCC CCCAGGTCACCGATGAATATGCTTGTTTGGCTGAAGCTGAAACAGAGATT GAACTTGAAGAGGCGCTCAAGGTTGACCTGGGCGAAGACGAGTTCATCGC GGCATACATCGCGTCGACTTCCACCACAGGCAAGGAAGGGGTTTTGTCTG TGGACTCTGAGGGGTTAGAATATCGTGAGGTGGGGGGGATGGAGATCTGG ATTTGTGATAATGGTGCAACGAAACACATGACCCATGATTCACATTTTCT TTTTGATTACCAGGAATGTGATGGGCGTGTACGCCTTGCAGATGGTAATC GTCTCCCGATCGAAGGAGTTGGCATGCTGTTCCTTCAATTTCGATTTGAC TCGGAGGTTGTTTTGATGAAGTTAACTCAGGTTGCGTTCATACCACTTCT TAGTCATCACCTCCTATCTCTCGGGAAATTCGCGGACTTTGGTCACGAAT ATAGGTGTTCGCGCGAAGGGCTCAGAATTAACCTTAAAACAGGGAGAGTT CTGAGTGCTGAGCGATTTGGTAGCCTT
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Coding sequence (CDS) from alignment at H-paniculata_contig53715:82..708+

>mRNA_H-paniculata_contig53715.12795.1 ID=mRNA_H-paniculata_contig53715.12795.1|Name=mRNA_H-paniculata_contig53715.12795.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1254bp|location=Sequence derived from alignment at H-paniculata_contig53715:82..708+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGTGCTTCATCTGCCGCTCCAAGGATCACCTTCGACGGGAATGCCCCAA
CGTGTACTGTGAGCGATGTGGTAAGCATGGTCACGACTTGTACGCATGCC
CCCAGGTCACCGATGAATATGCTTGTTTGGCTGAAGCTGAAACAGAGATT
GAACTTGAAGAGGCGCTCAAGGTTGACCTGGGCGAAGACGAGTTCATCGC
GGCATACATCGCGTCGACTTCCACCACAGGCAAGGAAGGGGTTTTGTCTG
TGGACTCTGAGGGGTTAGAATATCGTGAGGTGGGGGGGATGGAGATCTGG
ATTTGTGATAATGGTGCAACGAAACACATGACCCATGATTCACATTTTCT
TTTTGATTACCAGGAATGTGATGGGCGTGTACGCCTTGCAGATGGTAATC
GTCTCCCGATCGAAGGAGTTGGCATGCTGTTCCTTCAATTTCGATTTGAC
TCGGAGGTTGTTTTGATGAAGTTAACTCAGGTTGCGTTCATACCACTTCT
TAGTCATCACCTCCTATCTCTCGGGAAATTCGCGGACTTTGGTCACGAAT
ATAGGTGTTCGCGCGAAGGGCTCAGAATTAACCTTAAAACAGGGAGAGTT
CTGAGTGCTGAGCGATTTGGTAGCCTTAGGTGCTTCATCTGCCGCTCCAA
GGATCACCTTCGACGGGAATGCCCCAACGTGTACTGTGAGCGATGTGGTA
AGCATGGTCACGACTTGTACGCATGCCCCCAGGTCACCGATGAATATGCT
TGTTTGGCTGAAGCTGAAACAGAGATTGAACTTGAAGAGGCGCTCAAGGT
TGACCTGGGCGAAGACGAGTTCATCGCGGCATACATCGCGTCGACTTCCA
CCACAGGCAAGGAAGGGGTTTTGTCTGTGGACTCTGAGGGGTTAGAATAT
CGTGAGGTGGGGGGGATGGAGATCTGGATTTGTGATAATGGTGCAACGAA
ACACATGACCCATGATTCACATTTTCTTTTTGATTACCAGGAATGTGATG
GGCGTGTACGCCTTGCAGATGGTAATCGTCTCCCGATCGAAGGAGTTGGC
ATGCTGTTCCTTCAATTTCGATTTGACTCGGAGGTTGTTTTGATGAAGTT
AACTCAGGTTGCGTTCATACCACTTCTTAGTCATCACCTCCTATCTCTCG
GGAAATTCGCGGACTTTGGTCACGAATATAGGTGTTCGCGCGAAGGGCTC
AGAATTAACCTTAAAACAGGGAGAGTTCTGAGTGCTGAGCGATTTGGTAG
CCTT
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