mRNA_H-paniculata_contig53688.12790.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig53688.12790.1
Unique NamemRNA_H-paniculata_contig53688.12790.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig53688.12790.1 vs. uniprot
Match: A0A6H5JHR9_9PHAE (H15 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHR9_9PHAE)

HSP 1 Score: 65.5 bits (158), Expect = 2.080e-12
Identity = 32/47 (68.09%), Postives = 37/47 (78.72%), Query Frame = 1 
Query:    7 MVFQAIKELKERSGSSLPAIKKYIVTTYPEIASKFAPHQLRAALKKG 147
            MVF AIK LKER GSSLPA+KK I+ TYP +   F PHQ+R+ALKKG
Sbjct:    1 MVFDAIKALKERGGSSLPALKKQIMATYPSL--NFTPHQMRSALKKG 45
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BLAST of mRNA_H-paniculata_contig53688.12790.1 vs. uniprot
Match: D7G4I5_ECTSI (H15 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4I5_ECTSI)

HSP 1 Score: 66.2 bits (160), Expect = 2.130e-12
Identity = 33/49 (67.35%), Postives = 38/49 (77.55%), Query Frame = 1 
Query:    1 SQMVFQAIKELKERSGSSLPAIKKYIVTTYPEIASKFAPHQLRAALKKG 147
            S MVF AIK LKER GSSLPA+KK I+ TYP +   F PHQ+R+ALKKG
Sbjct:   10 SVMVFDAIKALKERGGSSLPALKKQIMATYPSL--NFTPHQMRSALKKG 56
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BLAST of mRNA_H-paniculata_contig53688.12790.1 vs. uniprot
Match: A0A6H5K9S6_9PHAE (H15 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9S6_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 5.700e-11
Identity = 31/47 (65.96%), Postives = 36/47 (76.60%), Query Frame = 1 
Query:    7 MVFQAIKELKERSGSSLPAIKKYIVTTYPEIASKFAPHQLRAALKKG 147
            MVF AIK LKER+GSS+ A+KK I  TYP  A  F PHQ+R+ALKKG
Sbjct:    1 MVFDAIKTLKERNGSSIQAMKKSITATYP--ALHFTPHQMRSALKKG 45
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BLAST of mRNA_H-paniculata_contig53688.12790.1 vs. uniprot
Match: D8LQ80_ECTSI (Histone H1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ80_ECTSI)

HSP 1 Score: 61.6 bits (148), Expect = 8.720e-11
Identity = 31/47 (65.96%), Postives = 36/47 (76.60%), Query Frame = 1 
Query:    7 MVFQAIKELKERSGSSLPAIKKYIVTTYPEIASKFAPHQLRAALKKG 147
            MVF AIK LKER+GSS+ AIKK I  TYP +   F PHQ+R+ALKKG
Sbjct:   11 MVFDAIKTLKERNGSSIQAIKKSITATYPTL--NFTPHQMRSALKKG 55
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BLAST of mRNA_H-paniculata_contig53688.12790.1 vs. uniprot
Match: D8LQ75_ECTSI (H15 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ75_ECTSI)

HSP 1 Score: 62.4 bits (150), Expect = 8.920e-11
Identity = 32/47 (68.09%), Postives = 36/47 (76.60%), Query Frame = 1 
Query:    7 MVFQAIKELKERSGSSLPAIKKYIVTTYPEIASKFAPHQLRAALKKG 147
            MVF AIK LKER+GSS+ AIKK I  TYP  A  F PHQ+R+ALKKG
Sbjct:    1 MVFDAIKSLKERNGSSIQAIKKSITATYP--ALNFTPHQMRSALKKG 45
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BLAST of mRNA_H-paniculata_contig53688.12790.1 vs. uniprot
Match: A0A6H5KST0_9PHAE (H15 domain-containing protein n=6 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KST0_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 1.230e-10
Identity = 31/47 (65.96%), Postives = 36/47 (76.60%), Query Frame = 1 
Query:    7 MVFQAIKELKERSGSSLPAIKKYIVTTYPEIASKFAPHQLRAALKKG 147
            MVF AIK LKER+GSS+ AIKK I  TYP +   F PHQ+R+ALKKG
Sbjct:    1 MVFDAIKTLKERNGSSIQAIKKSITATYPTL--NFTPHQMRSALKKG 45
[Close]
BLAST of mRNA_H-paniculata_contig53688.12790.1 vs. uniprot
Match: A0A6H5KCU1_9PHAE (H15 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCU1_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 6.970e-10
Identity = 31/47 (65.96%), Postives = 35/47 (74.47%), Query Frame = 1 
Query:    7 MVFQAIKELKERSGSSLPAIKKYIVTTYPEIASKFAPHQLRAALKKG 147
            MVF AIK LKER+GSS+ AIKK I  TYP +   F PHQ+R ALKKG
Sbjct:  104 MVFDAIKTLKERNGSSIQAIKKSITATYPTL--NFTPHQMRGALKKG 148
[Close]
BLAST of mRNA_H-paniculata_contig53688.12790.1 vs. uniprot
Match: D8LMF1_ECTSI (H15 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMF1_ECTSI)

HSP 1 Score: 58.9 bits (141), Expect = 1.440e-9
Identity = 31/49 (63.27%), Postives = 36/49 (73.47%), Query Frame = 1 
Query:    1 SQMVFQAIKELKERSGSSLPAIKKYIVTTYPEIASKFAPHQLRAALKKG 147
            S+M   AI  LKER+GSS+PAIKK+I  TYP +   F PHQLR ALKKG
Sbjct:    5 SEMAKVAILALKERNGSSVPAIKKHIQATYPTL--NFLPHQLRGALKKG 51
[Close]
BLAST of mRNA_H-paniculata_contig53688.12790.1 vs. uniprot
Match: A0A7S2Y1F8_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y1F8_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 3.390e-8
Identity = 29/46 (63.04%), Postives = 32/46 (69.57%), Query Frame = 1 
Query:    7 MVFQAIKELKERSGSSLPAIKKYIVTTYPEIASKFAPHQLRAALKK 144
            M   AI  LK+R+GSSLPAIK YI   YP +  KF PH LRAALKK
Sbjct:    7 MAKAAILALKDRTGSSLPAIKAYITANYPSV--KFLPHALRAALKK 50
[Close]
BLAST of mRNA_H-paniculata_contig53688.12790.1 vs. uniprot
Match: UPI00130448A6 (histone H1.3-like n=2 Tax=Nomia melanderi TaxID=2448451 RepID=UPI00130448A6)

HSP 1 Score: 53.9 bits (128), Expect = 6.740e-8
Identity = 29/52 (55.77%), Postives = 35/52 (67.31%), Query Frame = 1 
Query:    1 SQMVFQAIKELKERSGSSLPAIKKYIVTTYPEIASKFAP---HQLRAALKKG 147
            S+MV  AIKELK+R GSSL AIKKYI +TYP    K AP     L++A+  G
Sbjct:   44 SEMVIAAIKELKDRKGSSLQAIKKYIASTYPVNGEKLAPFIKRYLKSAVTSG 95
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig53688.12790.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JHR9_9PHAE2.080e-1268.09H15 domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G4I5_ECTSI2.130e-1267.35H15 domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A6H5K9S6_9PHAE5.700e-1165.96H15 domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LQ80_ECTSI8.720e-1165.96Histone H1 n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
D8LQ75_ECTSI8.920e-1168.09H15 domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KST0_9PHAE1.230e-1065.96H15 domain-containing protein n=6 Tax=Ectocarpus T... [more]
A0A6H5KCU1_9PHAE6.970e-1065.96H15 domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LMF1_ECTSI1.440e-963.27H15 domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A7S2Y1F8_9STRA3.390e-863.04Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
UPI00130448A66.740e-855.77histone H1.3-like n=2 Tax=Nomia melanderi TaxID=24... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig53688contigH-paniculata_contig53688:921..1067 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score65.5
Seed ortholog evalue7.7e-09
Seed eggNOG ortholog2880.D7G4I5
Preferred nameH1
KEGG koko:K11275
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005516,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044424,GO:0044464
EggNOG free text desc.Domain in histone families 1 and 5
EggNOG OGs2CYYI@1,2S79K@2759
COG Functional cat.B
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Exons1
Model size147
Cds size141
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930547.938748-CDS-H-paniculata_contig53688:920..10611622930547.938748-CDS-H-paniculata_contig53688:920..1061Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig53688 921..1061 -
1691481343.276592-CDS-H-paniculata_contig53688:920..10611691481343.276592-CDS-H-paniculata_contig53688:920..1061Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig53688 921..1061 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930547.9612374-UTR-H-paniculata_contig53688:1061..10671622930547.9612374-UTR-H-paniculata_contig53688:1061..1067Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig53688 1062..1067 -
1691481343.2870293-UTR-H-paniculata_contig53688:1061..10671691481343.2870293-UTR-H-paniculata_contig53688:1061..1067Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig53688 1062..1067 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig53688.12790.1prot_H-paniculata_contig53688.12790.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig53688 921..1061 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig53688.12790.1

>prot_H-paniculata_contig53688.12790.1 ID=prot_H-paniculata_contig53688.12790.1|Name=mRNA_H-paniculata_contig53688.12790.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=47bp
MVFQAIKELKERSGSSLPAIKKYIVTTYPEIASKFAPHQLRAALKKG
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mRNA from alignment at H-paniculata_contig53688:921..1067-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig53688.12790.1 ID=mRNA_H-paniculata_contig53688.12790.1|Name=mRNA_H-paniculata_contig53688.12790.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=147bp|location=Sequence derived from alignment at H-paniculata_contig53688:921..1067- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCGCAGATGGTCTTCCAAGCCATTAAGGAGCTCAAGGAGCGCAGCGGGTC
CAGCCTCCCAGCCATTAAGAAGTACATCGTCACCACCTACCCTGAGATTG
CTTCCAAGTTCGCCCCCCACCAGCTCCGCGCTGCTCTCAAGAAGGGC
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Coding sequence (CDS) from alignment at H-paniculata_contig53688:921..1067-

>mRNA_H-paniculata_contig53688.12790.1 ID=mRNA_H-paniculata_contig53688.12790.1|Name=mRNA_H-paniculata_contig53688.12790.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=282bp|location=Sequence derived from alignment at H-paniculata_contig53688:921..1067- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTCTTCCAAGCCATTAAGGAGCTCAAGGAGCGCAGCGGGTCCAGCCT
CCCAGCCATTAAGAAGTACATCGTCACCACCTACCCTGAGATTGCTTCCA
AGTTCGCCCCCCACCAGCTCCGCGCTGCTCTCAAGAAGGGCATGGTCTTC
CAAGCCATTAAGGAGCTCAAGGAGCGCAGCGGGTCCAGCCTCCCAGCCAT
TAAGAAGTACATCGTCACCACCTACCCTGAGATTGCTTCCAAGTTCGCCC
CCCACCAGCTCCGCGCTGCTCTCAAGAAGGGC
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