mRNA_H-paniculata_contig5362.12785.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
|
Overview
Homology
BLAST of mRNA_H-paniculata_contig5362.12785.1 vs. uniprot
Match: D8LKJ8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKJ8_ECTSI) HSP 1 Score: 335 bits (858), Expect = 4.770e-109 Identity = 171/297 (57.58%), Postives = 204/297 (68.69%), Query Frame = 2
Query: 341 TVLSLAQGLGVDFLPLTTLQFLDGPDVARAGRTNRFLYRASLNEGVWQAVRGRLWKGKVFVAPQAKEMLSAKAAYIESLADSRRTWLGQEELTTFSWWFRFKQQAGEAWTAQDPWYRNEKIVCADDPTSCAASGVPRSLTPPRGFDTKKSMHYLRGFTDCVCFWFPRVQCSDSRQSAGNNVASPFWHRGIYGNIAYRRTFDDSKLKATKFNADMSWRFVQRTGSRTGPSGSFLRVSIGGREVPTYIVSRHPSNWGFLLESCWTLYTSWEMPPRDGPGSDRSLLDDKLKVTMDDQWEE 1231
TVLSLAQGLG++F+PL+ L FLD D+ G NRFL++A+ +EGVW+A R RLW+GKVFV P++ + AK YI SL DS+RTWL EELT+FSWWFRFKQQAGEAWTAQDPWYRNEK C +P S A G PPR T + + C +Q ++ +VA+P + + + DD A++SWRFV RTG RTGP+GSFLRVSIGGREVPTYIVSRH SNWGFLLESCWT+YTSWEMPPR+GP D+SLLDDKL VTMDDQWEE
Sbjct: 24 TVLSLAQGLGLEFVPLSALLFLDARDIGACGAANRFLHKAAGDEGVWRAARDRLWEGKVFV-PESSRAMRAKEGYIASLRDSKRTWLHAEELTSFSWWFRFKQQAGEAWTAQDPWYRNEK-GCTSEPASSAGRGP---TLPPRWGKTTGERWRVLPWRPCGAGAEGGLQARPHGSASRRHVAAPREDESAFQGVE-KNEDDDGGGGCFAAKANISWRFVGRTGRRTGPTGSFLRVSIGGREVPTYIVSRHRSNWGFLLESCWTVYTSWEMPPREGPDCDQSLLDDKLTVTMDDQWEE 314
BLAST of mRNA_H-paniculata_contig5362.12785.1 vs. uniprot
Match: A0A6H5LH86_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LH86_9PHAE) HSP 1 Score: 331 bits (849), Expect = 1.050e-106 Identity = 173/313 (55.27%), Postives = 198/313 (63.26%), Query Frame = 2
Query: 341 TVLSLAQGLGVDFLPLTTLQFLDGPDVARAGRTNRFLYRASLNEGVWQAVRGRLWKGKVFVAPQAKEMLSAKAAYIESLADSRRTWLGQEELTTFSWWFRFKQQAGEAWTAQDPWYRNEKIVCAD-DPTSCAASGVPRSLTPPRGFDTKKSMHYLRGFTDCVCFWFPRVQCSDSRQSAGNNVASPFWHRGIYGNIAYRRTFDDSKLKATKFNADMSWRFVQRTGSRTGPSGSFLRVSIGGREVPTYIVSRHPSNWGFLLESCWTLYTSWEMPPRDGPGSDRSLLDDKLKVTMDDQWEEAMSFNTGLSFEIYDL 1276
TVLSLAQGLG++F+PL+ L FLD D+ G NRFL++A+ +EGVW+A R RLW+GKVFV P++ + AK YI SL DS+RTWL EELT+FSWWFRFKQQAGEAWT+QDPWYRNEK D P SL P A+++WRFV+RTG RTGP+GSFLRVSIGGREVPTYIVSRH SNWGFLLESCWT+YTSWEMPPR+GP D+SLLDDKL VTMDDQWEEAMSFNTGLSFEIYDL
Sbjct: 27 TVLSLAQGLGLEFVPLSALLFLDARDIEACGAANRFLHKAAGDEGVWRAARDRLWEGKVFV-PESSRAMRAKEGYIASLRDSKRTWLDAEELTSFSWWFRFKQQAGEAWTSQDPWYRNEKAPKVDFKPDHTVLRHGDMSLPPA---------------------------------------------------------------------ANINWRFVERTGRRTGPTGSFLRVSIGGREVPTYIVSRHRSNWGFLLESCWTVYTSWEMPPREGPDCDQSLLDDKLTVTMDDQWEEAMSFNTGLSFEIYDL 269
BLAST of mRNA_H-paniculata_contig5362.12785.1 vs. uniprot
Match: A0A061S4A8_9CHLO (F-box family protein (Fragment) n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061S4A8_9CHLO) HSP 1 Score: 138 bits (348), Expect = 1.400e-33 Identity = 91/287 (31.71%), Postives = 135/287 (47.04%), Query Frame = 2
Query: 404 LDGPDVARAGRTNRFLYRASLNEGVWQAVRGRLWKGKVFVAPQAKEMLSA---KAAYIESLADSRRTWLGQEELTTFSWWFRFKQQAGEAWTAQDPWYRNEKIVCADDPTSCAASGVPRSLTPPRGFDTKKSMHYLRGFTDCVCFWFPRVQCSDSRQSAGNNVASPFWHRGIYGNIAYRRTFDDSKLKATKFNADMSWRFVQRTGSRTGPSGSFLRVSIGGREVPTYIVSRHPSNWGFLLESCWTLYTSWEMPPRDGPGSDRSLLDDKLKVTMDDQWEEAMSFNTGL 1255
LD +A A +R + + G+W+ RLW+GK+ V A+E+L + AY +SL DSRR L EEL + W +R K+ AG +W +DP++ +G P + ++ H A +V+ DS L+ D WR+V +G R GP GSFLR S GRE PT+ VSRHP+NWG++L++CW++ S+ PP PG D +L D+ L + +DQ++EA+ FN GL
Sbjct: 29 LDPESLAIAACVSRSWRSIATSNGLWKGHCARLWEGKIHVLSGARELLDSGEGHKAYRDSLLDSRRQHLTDEELASIVWHYRMKKSAGGSWIEEDPYW----------------NGKPAN---------RRKFH------------------------ADGSVSR----------------ITDSGLEEP---VDRVWRWVSGSGGRVGPRGSFLRFSSQGREFPTHFVSRHPANWGWILQNCWSVTMSFPPPP---PGEDPALDDEGLAIGFEDQYDEAVCFNIGL 244
BLAST of mRNA_H-paniculata_contig5362.12785.1 vs. uniprot
Match: A0A0M0J8D1_9EUKA (Uncharacterized protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0J8D1_9EUKA) HSP 1 Score: 129 bits (324), Expect = 4.740e-30 Identity = 94/291 (32.30%), Postives = 135/291 (46.39%), Query Frame = 2
Query: 404 LDGPDVARAGRTNRFLYRA-SLNEGVWQAVRGRLWKGKVFVAPQAKEMLS---AKAAYIESLADSRRTWLGQEELTTFSWWFRFKQQAGEAWTAQDPWYRNEKIVCADDPTSCAASGVPRSLTPPRGFDTKKSMHYLRGFTDCVCFWFPRVQCSDSRQSAGNNVASPFWHRGIYGNIAYRRTFDDSKLKATKFNADMSWRFVQRTGSRTGPSGSFLRVSIGGREVPTYIVSRHPSNWGFLLESCWTLYTSWEMPPRDGPGSDRSLLDDKLKVTMDDQWEEAMSFNTGLSFE 1264
LD V R +R L S W+ LW KV+V +A+++ + A+AA S+ D+ RTWL +EL W FRFK AGE+WT +DP++ + L P R V F P + G V G R T S + + + + W++ + G G S L + + GR+VPTY VSRH SNWGFL++SCW LYTS+ MP R G+D SL D+ L++T++ Q EA ++NTGL ++
Sbjct: 26 LDLAGVGRLAGVDRTLRTIISSTNDAWEGHCSHLWDRKVYVPLRARKLRASGDARAALRLSIEDAERTWLTDDELCALEWNFRFKASAGESWTEEDPYWND--------------------LPPTR-----------------VKFEMP--------SATGGEVG------GEADGAESRGTMKPSGFEMLEHRS-LRWQWAKGRGEDVGGDRSRLELYVDGRKVPTYHVSRH-SNWGFLMQSCWVLYTSFPMPVR---GTDPSLDDEALEITIERQSREARAYNTGLFYD 260
BLAST of mRNA_H-paniculata_contig5362.12785.1 vs. uniprot
Match: A0A7S4DSF9_9EUKA (Hypothetical protein n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S4DSF9_9EUKA) HSP 1 Score: 127 bits (318), Expect = 5.380e-29 Identity = 91/289 (31.49%), Postives = 124/289 (42.91%), Query Frame = 2
Query: 392 TLQFLDGPDVARAGRTNRFLYRASLNEGVWQAVRGRLWKGKVFVAPQAKEMLSA--KAAYIESLADSRRTWLGQEELTTFSWWFRFKQQAGEAWTAQDPWYRNEKIVCADDPTSCAASGVPRSLTPPRGFDTKKSMHYLRGFTDCVCFWFPRVQCSDSRQSAGNNVASPFWHRGIYGNIAYRRTFDDSKLKATKFNADMSWRFVQRTGSRTGPSGSFLRVSIGGREVPTYIVSRHPSNWGFLLESCWTLYTSWEMPPRDGPGSDRSLLDDKLKVTMDDQWEEAMSFNTG 1252
++ FLD DV G NR Y AS +W + LW+ KV+V Q + M + + AY+ESL D+RR + +EL FSW FRFK+ AG W DP++ D S AS + R + + +R F F + A R T D K RFV+R I P+Y++SRH NWGFL++SCW L+TS+ MP PG D+ L D L+V +DDQ EE +N G
Sbjct: 19 SMSFLDVEDVLSCGMVNRRWYSASQENQIWGVLCEALWRDKVYVPKQIRGMANGNPRQAYVESLRDARRQYPTLDELLEFSWCFRFKKSAGPHWIQIDPYWT------LDHKGSSIASTIIRKFKADGSLERLDTHEAMRSFAGEAKFKW-----------------------------AVRETTDGDK------------RFVKR---------------IQVNHFPSYVISRHSRNWGFLMQSCWVLWTSFPMP---APGIDKFLDDGHLEVRVDDQIEEVHRYNFG 242
BLAST of mRNA_H-paniculata_contig5362.12785.1 vs. uniprot
Match: A0A7S1BDU6_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BDU6_9STRA) HSP 1 Score: 122 bits (305), Expect = 2.100e-27 Identity = 94/326 (28.83%), Postives = 147/326 (45.09%), Query Frame = 2
Query: 326 TSHPVTVLSLAQGLGVDFLPLTTLQFLDGPDVARAGRTNRFLYRASLNEGVWQAVRGRLWKGKVFVAPQAKEMLS-------AKAAYIESLA--DSRRTWLGQEELTTFSWWFRFKQQAGEAWTAQDPWYRN---EKIVCADDPTSCAASGVPRSLTPPRGFDTKKSMHYLRGFTDCVCFWFPRVQCSDSRQSAGNNVASPFWHRGIYGNIAYRRTFDDSKLKATKFNADMSWRFVQRTGS--RTGPSGSFLRVSIGGREVPTYIVSRHPSN-WGFLLESCWTLYTSWEMPPRDGPGSDRSLLDDKLKVTMDDQWEEAMSFNTGLS 1258
+SHP T +L+ D + L + FL V T++ ++ + VW A+ R+WK KV V +A M AK + + DS+R + + EL + W+FRFK AG WT+ DPW+ ++ D AS S+ + D + +H R D + C+D PF +++K M WRF+ R P G+++R+SI GR+VPTY V R P+N WGF +E+CW +Y S+ +P R G+++ L D L +Q +EA+ +N G+S
Sbjct: 36 SSHPTTPHALSDQNIPDDVFLVLISFLPTRSVLELMMTDKDVFHRCSTDIVWDALCQRMWKDKVNVPGEALRMRDMIRIRGGAKMIDVFKMCYLDSKRQEVTKRELCSNPWYFRFKGSAGSLWTSSDPWWSGGNARRLRFLPDGKIAPASSD--SIVCEKDNDASEHLHKKRKLNDYSNGGNEKEDCND-----------PF-----------------AEVK-------MRWRFITRPLDCYENRPVGAYIRISINGRDVPTYHVRRSPTNNWGFTMENCWGVYASFNLPKR---GTEKLLEDQVLISAQKNQMKEALYYNNGVS 321
BLAST of mRNA_H-paniculata_contig5362.12785.1 vs. uniprot
Match: B7GD95_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7GD95_PHATC) HSP 1 Score: 116 bits (291), Expect = 1.280e-25 Identity = 88/268 (32.84%), Postives = 126/268 (47.01%), Query Frame = 2
Query: 401 FLDGPDVARAGRTNRFLYRASL-NEGVWQAVRGRLWKGKVFVAPQAKEMLSAKAAYIESLADSR-RTWLGQEELTT-------FSWWFRFKQQAGEAWTAQDPWYRNE---KIVCADDPTSCAASGVPRSLTPPRGFDTKKSMHYLRGFTDCVCFWFPRVQCSDSRQSAGNNVASPFWHRGIYGNIAYR-RTFDDSKLKATKFNADMSWRFVQRTGSRTG-PSGSFLRVSIGGREVPTYIVSRHPS-NWGFLLESCWTLYTSWEMPPR 1159
FLD + G T R + S N W + LW+ KV V A+ S K +Y+ S+ D++ R + +EL W FRFK+ AG+ WT DPWY + K+V D T SG D + L F F R+ A +N PF +G R R +D+ +M+WRF+ R P+GS+LR ++GGR+VPTY++ R P+ NWGF++ESCW LY S+E+PP+
Sbjct: 49 FLDARTLVAFGATCRSFHDLSQKNAAGWDNLCEVLWRSKVHVCAAARAHPSRKESYLRSIRDAQTRQSITIDELCYDIETRRGTIWSFRFKESAGDEWTNLDPWYYGQPCRKMVFLKDGTVQEFSGNTNRDNSNDSHDRMSAAPQLA--PPLFDFGFERL--------AADNHPVPFL--AAHGREGPRVRVGNDAVENLIDRPVNMTWRFLSRPMDLPPRPNGSYLRFNVGGRDVPTYVIRRSPTGNWGFVMESCWGLYGSFELPPQ 304
BLAST of mRNA_H-paniculata_contig5362.12785.1 vs. uniprot
Match: A0A7S0DF25_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0DF25_9EUKA) HSP 1 Score: 112 bits (280), Expect = 4.030e-24 Identity = 83/288 (28.82%), Postives = 116/288 (40.28%), Query Frame = 2
Query: 395 LQFLDGPDVARAGRTNRFLYRASLNEGVWQAVRGRLWKGKVFVAP--QAKEMLSAKAAYIESLADSRRTWLGQEELTTFSWWFRFKQQAGEAWTAQDPWYRNEKIVCADDPTSCAASGVPRSLTPPRGFDTKKSMHYLRGFTDCVCFWFPRVQCSDSRQSAGNNVASPFWHRGIYGNIAYRRTFDDSKLKATKFNADMSWRFVQRTGSRTGPSGSFLRVSIGGREVPTYIVSRHPSNWGFLLESCWTLYTSWEMPPRDGPGSDRSLLDDKLKVTMDDQWEEAMSFNTG 1252
L FL DV R + + S + +W + LW+ K +V +A ++ ++ AY ESL DS+R EEL F W FRFK+ AG W DP++ D S A + R + LR F+ G+N + F RT G R+ + P+YI SRHP NWGF+++SCW L+TS+ MP PG D L+D KL+V +DDQ EE +N G
Sbjct: 18 LSFLPLKDVLRCAQVCKQWLARSKSNAIWGGLCDELWRTKAYVPMYIRAMKLRNSNQAYFESLRDSKRQHPTLEELCEFEWCFRFKESAGAHWIQIDPYWS------LDHKDSKIAQTIIRRFMKDGTLKRLDNFDALRNFS-------------------GSN-----------------------------------YEFKWRTRDSEGEGKYIKRIQVN--HFPSYITSRHPRNWGFIMQSCWVLWTSFPMP---APGHDDLLVDQKLEVKVDDQMEEVDRYNYG 240
BLAST of mRNA_H-paniculata_contig5362.12785.1 vs. uniprot
Match: A0A812PGR1_9DINO (Kif11-b protein n=1 Tax=Symbiodinium sp. CCMP2592 TaxID=631055 RepID=A0A812PGR1_9DINO) HSP 1 Score: 115 bits (289), Expect = 5.030e-24 Identity = 83/299 (27.76%), Postives = 132/299 (44.15%), Query Frame = 2
Query: 371 VDFLPLTTLQFLDGPDVARAGRTNRFLYRASLNEGVWQAVRGRLWKGKVFVAPQAKEMLS-AKAAYIESLADSRRTWLGQEELTTFSWWFRFKQQAGEAWTAQDPWYRNEKIVCADDPTSCAASGVPRSLTPPRGFDTKKSMHYLRGFTDCVCFWFPRVQCSDSRQSAGNNVASPFWHRGIYGNIAYRRTFDDSKLKATKFNADMSWRFVQRTGSRTGPSGSF----LRVSIGGREVPTYIVSRHPSNWGFLLESCWTLYTSWEMPPRDGPGSDRSLLDDKLKVTMDDQWEEAMSFNTG 1252
VD + L L ++A T L +++ VW + G LW+G+ + + S A+ AY +SL DSRRT + + EL + W FRFK AGE W A DPW++ ++ RV+ + ++A F ++G+ + + +F A + TG + F +R + GREVPTY V R+ NWG+ +ESCW +++SW MP +D P ++ L D++L V+ D Q ++AM+FN G
Sbjct: 9 VDESLILLLGNLRAQEIAAVAATGSRLRSVAVSNPVWDGLCGALWQGRAVLHRFTELRRSDAREAYRQSLEDSRRTNITRGELLSIDWSFRFKASAGEGWQAGDPWWQGQEAT--------------------------------------------RVRFKKNGRAA-------FKRGPLFGSRP-----PVLRWRFVRFPARTHQALNRTTGRGSADFSEFGRRGIRAKVMGREVPTYCVRRNKHNWGWTMESCWVVWSSWPMPRKDSPEAEL-LEDERLPVSFDVQEDQAMAFNNG 250
BLAST of mRNA_H-paniculata_contig5362.12785.1 vs. uniprot
Match: A0A7S0E3L2_9CRYP (Hypothetical protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0E3L2_9CRYP) HSP 1 Score: 106 bits (264), Expect = 1.430e-21 Identity = 77/284 (27.11%), Postives = 120/284 (42.25%), Query Frame = 2
Query: 467 NEGVWQAVRGRLWKGKVFVAPQAKEML---SAKAAYIESLADSRRTWLGQEELTTFSWWFRFKQQAGEAWTAQDPWYRNEKIVCADDPTSCAASGVPRSLTPPRGFDTKKSMHYLRGFTDCVCFWFPRVQCSDSRQSAGNNVASPFWHRGIYGNIAYRRTFDDSKLKATKFNADMSWRFVQRTGSRTGPSGSFLRVSIGGREVPTYIVSRHPSNWGFLLESCWTLYTSWEMPPRDGPGSDRSLLDDKLKVTMDDQWEEAMSFNTGLSFEIYDLGGLGNEDSDDE 1309
++ VW+A+ +WK + P+ E L + K AY+E+ D RT L EEL F W+FRFK+ AG WT DP++ +G+P + CF S + V H + + +R W + +G +RVS+ GR+VPTY+VSRHP + GFL++SCW + +S+ +PP P D + D+ L VT++ Q E +N G + + +D D+E
Sbjct: 90 SDDVWRALCDEIWKRSGYW-PENLERLRDKNPKQAYLEACKDIDRTELTLEELCGFRWYFRFKKAAGSHWTDSDPYW----------------NGMPARFS---------------------CF-----TADGSLTRMSSEVTDEAEHNTYFPTLTWR------------------WGNSRSLQPASGSPCGRVRVSVEGRDVPTYVVSRHPKHRGFLMQSCWAVMSSFPLPP---PREDPDMEDEALSVTLECQQTEVFQYNFGSLLPTFPVRTRTEDDGDEE 309 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5362.12785.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig5362.12785.1 >prot_H-paniculata_contig5362.12785.1 ID=prot_H-paniculata_contig5362.12785.1|Name=mRNA_H-paniculata_contig5362.12785.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=399bp MEDLERLPRTLPIKVLPLPSPTEPQQIEHLSLSTTTSHPVTVLSLAQGLGback to top mRNA from alignment at H-paniculata_contig5362:5152..12463- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig5362.12785.1 ID=mRNA_H-paniculata_contig5362.12785.1|Name=mRNA_H-paniculata_contig5362.12785.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=7312bp|location=Sequence derived from alignment at H-paniculata_contig5362:5152..12463- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig5362:5152..12463- >mRNA_H-paniculata_contig5362.12785.1 ID=mRNA_H-paniculata_contig5362.12785.1|Name=mRNA_H-paniculata_contig5362.12785.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2394bp|location=Sequence derived from alignment at H-paniculata_contig5362:5152..12463- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |