prot_H-paniculata_contig5356.12778.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig5356.12778.1
Unique Nameprot_H-paniculata_contig5356.12778.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length342
Homology
BLAST of mRNA_H-paniculata_contig5356.12778.1 vs. uniprot
Match: A0A6H5KNQ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNQ7_9PHAE)

HSP 1 Score: 207 bits (528), Expect = 2.040e-58
Identity = 191/328 (58.23%), Postives = 201/328 (61.28%), Query Frame = 0
Query:   15 RVAYAGSTSKRIYTVDTRDPMAVVAEWNCASSVNSLHVYSDGSKVMSADASGKICTWDARTGRMVDEYSLEDPIHISHIQASPPDAGRQDEEGLLLAANCFDNTLRVFNRRFNNKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFASPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGVGRAQGALVGKAGGREVDGVGEWVMQQXXXXXXXXXXXXXXENEPPSLQLMHALRGHTVKNWPIRCAFFRGLHHRPPRVRLGVGSGGGG 342
            RVAYAGSTSK+IYTVDTRDPM VVA+WNC + VNSLHVYSDGSKV+SADASGKI TWD RTG +VD YSLEDPIHISHIQASPPDAGRQDEEGLLLAANCFDNTLRVF+RRF N   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                                                                             G+A  +E                             PSL+LMHALRGHTVKNWPIR     GLHHRPPRVRLG+  GG G
Sbjct:  272 RVAYAGSTSKKIYTVDTRDPMGVVAKWNCGAFVNSLHVYSDGSKVVSADASGKILTWDTRTGGVVDSYSLEDPIHISHIQASPPDAGRQDEEGLLLAANCFDNTLRVFHRRFLNSRPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEE---------------------------------------------------------------------------GEAKPKE-----------------------------PSLELMHALRGHTVKNWPIR-----GLHHRPPRVRLGLAKGGNG 490          
BLAST of mRNA_H-paniculata_contig5356.12778.1 vs. uniprot
Match: A0A5D6XXH4_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XXH4_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 5.680e-14
Identity = 50/112 (44.64%), Postives = 69/112 (61.61%), Query Frame = 0
Query:   18 YAGSTSKRIYTVDTRDPMAVVAEWNCASSVNSLHVYSDGSKVMSADASGKICTWDARTGRMVDEYS-LEDPIH--ISHIQASPPDAGRQ-DEEGLLLAANCFDNTLRVFNRR 125
            + G++   I+ VD+R    VV  W   + VNSL+V  DG  +++ D+ G + TWD R    +D+ S L DP    ISHI ASPP  GR+ DE+G  LAAN +DN LRV++RR
Sbjct:  196 FFGTSKSCIHQVDSRAD--VVRSWQNDAMVNSLYVSPDGQFIVTGDSKGMLKTWDVRMDACIDDISKLNDPGRHAISHIHASPPVDGRRGDEDGRFLAANSYDNLLRVYDRR 305          
BLAST of mRNA_H-paniculata_contig5356.12778.1 vs. uniprot
Match: A0A2D4BDQ6_PYTIN (Uncharacterized protein (Fragment) n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BDQ6_PYTIN)

HSP 1 Score: 79.3 bits (194), Expect = 1.150e-12
Identity = 48/112 (42.86%), Postives = 69/112 (61.61%), Query Frame = 0
Query:   18 YAGSTSKRIYTVDTRDPMAVVAEWNCASSVNSLHVYSDGSKVMSADASGKICTWDARTGRMVDEYSLE-DPIH--ISHIQASPPDAGRQ-DEEGLLLAANCFDNTLRVFNRR 125
            + G++   I+ +D+R    V  +W   + VNSL+V  DG  V++ D+ G I TWD R    +++ S + DP +  ISHI ASPP  GR  DE+G  LAAN +DN LRV++RR
Sbjct:  211 FLGTSKNAIHMMDSR--AEVCRKWQNNAMVNSLYVSPDGQFVITGDSRGMIKTWDVRMESCIEDISRQNDPGNHAISHIHASPPVDGRSGDEDGRFLAANSYDNILRVYDRR 320          
BLAST of mRNA_H-paniculata_contig5356.12778.1 vs. uniprot
Match: A0A8K1CHV1_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CHV1_PYTOL)

HSP 1 Score: 78.2 bits (191), Expect = 2.850e-12
Identity = 49/115 (42.61%), Postives = 69/115 (60.00%), Query Frame = 0
Query:   18 YAGSTSKRIYTVDTRDPMAVVAE---WNCASSVNSLHVYSDGSKVMSADASGKICTWDARTGRMVDEYSLE-DPIH--ISHIQASPPDAGRQ-DEEGLLLAANCFDNTLRVFNRR 125
            + G++   I+ VD+R  +   ++   W   + VNSL+V  DG  V++ D+ G I TWD R    +++ S E DP    ISHI ASPP  GR  DE+G  LAAN +DN LRV++RR
Sbjct:  216 FMGTSKSAIHMVDSRADVCRWSDCVTWQNDAMVNSLYVSPDGQFVVTGDSKGMIKTWDVRMESCIEDISRENDPGRHAISHIHASPPVDGRGGDEDGRFLAANSYDNILRVYDRR 330          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5356.12778.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5KNQ7_9PHAE2.040e-5858.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A5D6XXH4_9STRA5.680e-1444.64Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A2D4BDQ6_PYTIN1.150e-1242.86Uncharacterized protein (Fragment) n=1 Tax=Pythium... [more]
A0A8K1CHV1_PYTOL2.850e-1242.61Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 277..297
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 12..189
e-value: 1.3E-12
score: 49.4
IPR036322WD40-repeat-containing domain superfamilySUPERFAMILY50978WD40 repeat-likecoord: 14..136

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5356contigH-paniculata_contig5356:8066..13910 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5356.12778.1mRNA_H-paniculata_contig5356.12778.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig5356 8066..13910 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig5356.12778.1 ID=prot_H-paniculata_contig5356.12778.1|Name=mRNA_H-paniculata_contig5356.12778.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=342bp
MGGGGGGGGLGGAGRVAYAGSTSKRIYTVDTRDPMAVVAEWNCASSVNSL
HVYSDGSKVMSADASGKICTWDARTGRMVDEYSLEDPIHISHIQASPPDA
GRQDEEGLLLAANCFDNTLRVFNRRFNNKNSNSNSSSSSSSSNSSNNKTT
IVIPRPSSSLSSSLSSTTTPRTTATITTIHNNAMLDAAISGGGGGSGSGS
RNTTVFASPAAATAAAASLGASSSYSASHHPSSGSSAASSAFGSSGGGSG
GNGVGRAQGALVGKAGGREVDGVGEWVMQQQQQQQQQQQQQQQHENEPPS
LQLMHALRGHTVKNWPIRCAFFRGLHHRPPRVRLGVGSGGGG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR036322WD40_repeat_dom_sf