mRNA_H-paniculata_contig53540.12776.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig53540.12776.1
Unique NamemRNA_H-paniculata_contig53540.12776.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig53540.12776.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig53540contigH-paniculata_contig53540:312..843 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size533
Cds size432
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930546.0175529-CDS-H-paniculata_contig53540:311..7431622930546.0175529-CDS-H-paniculata_contig53540:311..743Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig53540 312..743 +
1691481342.274576-CDS-H-paniculata_contig53540:311..7431691481342.274576-CDS-H-paniculata_contig53540:311..743Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig53540 312..743 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930546.037562-UTR-H-paniculata_contig53540:743..8431622930546.037562-UTR-H-paniculata_contig53540:743..843Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig53540 744..843 +
1691481342.284203-UTR-H-paniculata_contig53540:743..8431691481342.284203-UTR-H-paniculata_contig53540:743..843Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig53540 744..843 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig53540.12776.1prot_H-paniculata_contig53540.12776.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig53540 312..743 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig53540.12776.1

>prot_H-paniculata_contig53540.12776.1 ID=prot_H-paniculata_contig53540.12776.1|Name=mRNA_H-paniculata_contig53540.12776.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=144bp
NGDHRNGRGSNNDSGGGRNSGRCPTITRSGSETNSGISGDWRGRNRVDIT
RDGVRRCTQPTPSLEVAAARVLGLSEDDRTYRPLSSLSAHARATAIEVAN
TEACKAAEIVQAQTAADALKATSDAARVAAIQREHIKIDSKHI*
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mRNA from alignment at H-paniculata_contig53540:312..843+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig53540.12776.1 ID=mRNA_H-paniculata_contig53540.12776.1|Name=mRNA_H-paniculata_contig53540.12776.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=532bp|location=Sequence derived from alignment at H-paniculata_contig53540:312..843+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AACGGAGATCACCGGAATGGGCGTGGCTCCAACAACGACTCTGGCGGTGG
CCGGAACTCGGGACGCTGCCCAACCATCACACGATCCGGGAGCGAAACGA
ATTCGGGAATATCGGGAGACTGGCGCGGTCGCAACCGCGTCGACATCACT
AGAGACGGAGTTCGAAGGTGCACACAGCCCACTCCTAGTTTGGAGGTTGC
AGCTGCTCGTGTTCTCGGCCTTTCCGAGGATGATCGTACTTATAGACCTC
TCTCTTCCTTGTCCGCTCATGCTCGCGCTACCGCTATAGAAGTAGCAAAT
ACCGAAGCATGTAAGGCCGCAGAAATAGTACAGGCACAAACGGCCGCTGA
TGCGTTGAAGGCTACGAGCGATGCCGCACGTGTAGCCGCAATTCAGAGAG
AGCATATAAAAATTGATTCAAAACATATTTGATTTGTTGACCCTATGCCC
CCGTCTAGTACTGAAGACACGGGCCTATACACGGCCAATTTATTAAAATC
AATTCAGCGTGCTTTGGCGAACATTTTGGAAC
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Coding sequence (CDS) from alignment at H-paniculata_contig53540:312..843+

>mRNA_H-paniculata_contig53540.12776.1 ID=mRNA_H-paniculata_contig53540.12776.1|Name=mRNA_H-paniculata_contig53540.12776.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=864bp|location=Sequence derived from alignment at H-paniculata_contig53540:312..843+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AACGGAGATCACCGGAATGGGCGTGGCTCCAACAACGACTCTGGCGGTGG
CCGGAACTCGGGACGCTGCCCAACCATCACACGATCCGGGAGCGAAACGA
ATTCGGGAATATCGGGAGACTGGCGCGGTCGCAACCGCGTCGACATCACT
AGAGACGGAGTTCGAAGGTGCACACAGCCCACTCCTAGTTTGGAGGTTGC
AGCTGCTCGTGTTCTCGGCCTTTCCGAGGATGATCGTACTTATAGACCTC
TCTCTTCCTTGTCCGCTCATGCTCGCGCTACCGCTATAGAAGTAGCAAAT
ACCGAAGCATGTAAGGCCGCAGAAATAGTACAGGCACAAACGGCCGCTGA
TGCGTTGAAGGCTACGAGCGATGCCGCACGTGTAGCCGCAATTCAGAGAG
AGCATATAAAAATTGATTCAAAACATATTTGAAACGGAGATCACCGGAAT
GGGCGTGGCTCCAACAACGACTCTGGCGGTGGCCGGAACTCGGGACGCTG
CCCAACCATCACACGATCCGGGAGCGAAACGAATTCGGGAATATCGGGAG
ACTGGCGCGGTCGCAACCGCGTCGACATCACTAGAGACGGAGTTCGAAGG
TGCACACAGCCCACTCCTAGTTTGGAGGTTGCAGCTGCTCGTGTTCTCGG
CCTTTCCGAGGATGATCGTACTTATAGACCTCTCTCTTCCTTGTCCGCTC
ATGCTCGCGCTACCGCTATAGAAGTAGCAAATACCGAAGCATGTAAGGCC
GCAGAAATAGTACAGGCACAAACGGCCGCTGATGCGTTGAAGGCTACGAG
CGATGCCGCACGTGTAGCCGCAATTCAGAGAGAGCATATAAAAATTGATT
CAAAACATATTTGA
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