mRNA_H-paniculata_contig5354.12774.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5354.12774.1
Unique NamemRNA_H-paniculata_contig5354.12774.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig5354.12774.1 vs. uniprot
Match: D7G1C0_ECTSI (Lissencephaly-1 homolog n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1C0_ECTSI)

HSP 1 Score: 115 bits (288), Expect = 1.180e-28
Identity = 61/73 (83.56%), Postives = 68/73 (93.15%), Query Frame = 1 
Query:    1 VMDLEARLEQAQQDLKSGVRPGKDR-SGPGDRVLPRAPAKVSLSGHRNPVTCVALHPLYSVVASASEDATVKV 216
            VMDLEARL+QAQQDLKSGVRPG+++ +G  DRVLPRAPAK  L+GHRNPVTCVALHPLYSVVAS+SEDATVKV
Sbjct:   66 VMDLEARLDQAQQDLKSGVRPGREKGAGGSDRVLPRAPAKGVLTGHRNPVTCVALHPLYSVVASSSEDATVKV 138
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BLAST of mRNA_H-paniculata_contig5354.12774.1 vs. uniprot
Match: A0A6H5JKZ3_9PHAE (Ge1_WD40 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKZ3_9PHAE)

HSP 1 Score: 110 bits (275), Expect = 1.100e-27
Identity = 58/72 (80.56%), Postives = 66/72 (91.67%), Query Frame = 1 
Query:    4 MDLEARLEQAQQDLKSGVRPGKDR-SGPGDRVLPRAPAKVSLSGHRNPVTCVALHPLYSVVASASEDATVKV 216
            M+LEARL+QAQ DLKSGVRPG+++ +G  DRVLPRAPAK  L+GHRNPVTCVALHPLYSVVAS+SEDATVKV
Sbjct:    1 MELEARLDQAQDDLKSGVRPGREKGAGGSDRVLPRAPAKGVLTGHRNPVTCVALHPLYSVVASSSEDATVKV 72
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BLAST of mRNA_H-paniculata_contig5354.12774.1 vs. uniprot
Match: A0A7S0SXC9_9STRA (Lissencephaly-1 homolog n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SXC9_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 2.360e-14
Identity = 39/80 (48.75%), Postives = 53/80 (66.25%), Query Frame = 1 
Query:    1 VMDLEARLEQAQQDLKSGVRPGKDRS---------GPGDRVLPRAPAKVSLSGHRNPVTCVALHPLYSVVASASEDATVK 213
            VM+LE +L   Q+ LKSG+      +         G  +R++P+ PAK SLSGHR PVTC+A HP+YS+VAS SED+T+K
Sbjct:   66 VMELETQLNDLQKQLKSGIATNGIENDTLKTNATIGENNRLIPKGPAKASLSGHRGPVTCIATHPIYSLVASGSEDSTIK 145
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BLAST of mRNA_H-paniculata_contig5354.12774.1 vs. uniprot
Match: LIS1_BRAFL (Lissencephaly-1 homolog n=2 Tax=Branchiostoma TaxID=7737 RepID=LIS1_BRAFL)

HSP 1 Score: 73.9 bits (180), Expect = 1.080e-13
Identity = 39/72 (54.17%), Postives = 54/72 (75.00%), Query Frame = 1 
Query:    1 VMDLEARLEQAQQDLKSGVRPGKDRSGPGDRVLPRAPAKVSLSGHRNPVTCVALHPLYSVVASASEDATVKV 216
            VMDLEA+L +A+++ +SG    K+RS      +PR PA+ SLSGHR+P+T V  HP+YSV+ SASEDAT+K+
Sbjct:   63 VMDLEAKLAEAEKEFQSGGPNKKERSP--SEWIPRPPARYSLSGHRSPITRVLFHPVYSVMVSASEDATIKI 132
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BLAST of mRNA_H-paniculata_contig5354.12774.1 vs. uniprot
Match: T1G6J2_HELRO (Lissencephaly-1 homolog n=1 Tax=Helobdella robusta TaxID=6412 RepID=T1G6J2_HELRO)

HSP 1 Score: 73.9 bits (180), Expect = 1.090e-13
Identity = 38/72 (52.78%), Postives = 54/72 (75.00%), Query Frame = 1 
Query:    1 VMDLEARLEQAQQDLKSGVRPGKDRSGPGDRVLPRAPAKVSLSGHRNPVTCVALHPLYSVVASASEDATVKV 216
            V+DLEARL + +++++ GV PG+DR  P D + PR P K SL+GHR  VT V  HP+++++ SASEDAT+KV
Sbjct:   65 VVDLEARLAETEKEIQVGV-PGRDRQNPSDWI-PRPPEKYSLTGHRGSVTRVVFHPVFNIIVSASEDATIKV 134
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BLAST of mRNA_H-paniculata_contig5354.12774.1 vs. uniprot
Match: A0A485LG79_9STRA (Lissencephaly-1 homolog n=7 Tax=Aphanomyces TaxID=100860 RepID=A0A485LG79_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 1.120e-13
Identity = 39/74 (52.70%), Postives = 56/74 (75.68%), Query Frame = 1 
Query:    1 VMDLEARLEQAQQDLK-SGVRPGKDRSGPG-DRVLPRAPAKVSLSGHRNPVTCVALHPLYSVVASASEDATVKV 216
            VM+LE++++Q ++D K  GV   +D +G G D  LPRAP K S+SGHR+P+T V  HP++SVV ++SEDAT+KV
Sbjct:   67 VMELESKIQQMEEDAKLGGVVSRRDVTGIGRDAALPRAPPKYSMSGHRSPITSVVFHPIFSVVVTSSEDATIKV 140
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BLAST of mRNA_H-paniculata_contig5354.12774.1 vs. uniprot
Match: A0A225W249_9STRA (Lissencephaly-1 homolog n=2 Tax=Phytophthora TaxID=4783 RepID=A0A225W249_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 1.170e-13
Identity = 41/75 (54.67%), Postives = 55/75 (73.33%), Query Frame = 1 
Query:    1 VMDLEARLEQAQQDLK-SGVRPGKDRSGPGDRV--LPRAPAKVSLSGHRNPVTCVALHPLYSVVASASEDATVKV 216
            VM+LE ++ Q ++++K  GV   +D  G   R   LPRAPAK SL+GHR+P+TCVA HP++SV+ S SEDATVKV
Sbjct:   65 VMELETKVAQLEENVKLGGVLSRRDVLGARQRTEFLPRAPAKFSLTGHRSPITCVAFHPVFSVLVSGSEDATVKV 139
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BLAST of mRNA_H-paniculata_contig5354.12774.1 vs. uniprot
Match: A0A8J9VA17_BRALA (PAFAH1B1 protein n=1 Tax=Branchiostoma lanceolatum TaxID=7740 RepID=A0A8J9VA17_BRALA)

HSP 1 Score: 73.9 bits (180), Expect = 1.220e-13
Identity = 39/72 (54.17%), Postives = 54/72 (75.00%), Query Frame = 1 
Query:    1 VMDLEARLEQAQQDLKSGVRPGKDRSGPGDRVLPRAPAKVSLSGHRNPVTCVALHPLYSVVASASEDATVKV 216
            VMDLEA+L +A+++ +SG    K+RS      +PR PA+ SLSGHR+P+T V  HP+YSV+ SASEDAT+K+
Sbjct:  316 VMDLEAKLAEAEKEFQSGGPNKKERSP--SEWIPRPPARYSLSGHRSPITRVLFHPVYSVMVSASEDATIKI 385
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BLAST of mRNA_H-paniculata_contig5354.12774.1 vs. uniprot
Match: A0A6A5AET7_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5AET7_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 1.260e-13
Identity = 39/76 (51.32%), Postives = 56/76 (73.68%), Query Frame = 1 
Query:    1 VMDLEARLEQAQQDLK-SGVRPGKDRSGPG---DRVLPRAPAKVSLSGHRNPVTCVALHPLYSVVASASEDATVKV 216
            VM+LE++++Q ++D K  GV   +D +G G      LPRAP K S+SGHR+P+TCV  HP++SVV ++SEDAT+KV
Sbjct:   70 VMELESKIQQLEEDSKLGGVVSRRDVTGIGRDPSTFLPRAPPKYSMSGHRSPITCVVFHPVFSVVVTSSEDATIKV 145
[Close]
BLAST of mRNA_H-paniculata_contig5354.12774.1 vs. uniprot
Match: M4BL66_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BL66_HYAAE)

HSP 1 Score: 73.6 bits (179), Expect = 1.540e-13
Identity = 41/75 (54.67%), Postives = 55/75 (73.33%), Query Frame = 1 
Query:    1 VMDLEARLEQAQQDLK-SGVRPGKDRSGPGDRV--LPRAPAKVSLSGHRNPVTCVALHPLYSVVASASEDATVKV 216
            VM+LE ++ Q ++  K  GV   +D  G   R   LPR PAK++L+GHR+P+TCVA HP++SV+ASASEDATVKV
Sbjct:   44 VMELETKVAQLEETAKLGGVLSRRDVLGARQRAEFLPRVPAKLTLTGHRSPITCVAFHPVFSVLASASEDATVKV 118
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5354.12774.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G1C0_ECTSI1.180e-2883.56Lissencephaly-1 homolog n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JKZ3_9PHAE1.100e-2780.56Ge1_WD40 domain-containing protein (Fragment) n=1 ... [more]
A0A7S0SXC9_9STRA2.360e-1448.75Lissencephaly-1 homolog n=1 Tax=Chromulina nebulos... [more]
LIS1_BRAFL1.080e-1354.17Lissencephaly-1 homolog n=2 Tax=Branchiostoma TaxI... [more]
T1G6J2_HELRO1.090e-1352.78Lissencephaly-1 homolog n=1 Tax=Helobdella robusta... [more]
A0A485LG79_9STRA1.120e-1352.70Lissencephaly-1 homolog n=7 Tax=Aphanomyces TaxID=... [more]
A0A225W249_9STRA1.170e-1354.67Lissencephaly-1 homolog n=2 Tax=Phytophthora TaxID... [more]
A0A8J9VA17_BRALA1.220e-1354.17PAFAH1B1 protein n=1 Tax=Branchiostoma lanceolatum... [more]
A0A6A5AET7_9STRA1.260e-1351.32Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
M4BL66_HYAAE1.540e-1354.67Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5354contigH-paniculata_contig5354:4629..4859 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score117.1
Seed ortholog evalue3.6e-24
Seed eggNOG ortholog2880.D7G1C0
KEGG rclassRC00037,RC00094
KEGG koko:K16794
KEGG ReactionR04452
KEGG Pathwayko00565,ko01100,map00565,map01100
Hectar predicted targeting categoryother localisation
GOsGO:0000775,GO:0000776,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005694,GO:0005737,GO:0005813,GO:0005815,GO:0005856,GO:0005874,GO:0005875,GO:0005938,GO:0007154,GO:0007165,GO:0008017,GO:0008092,GO:0008104,GO:0008150,GO:0009987,GO:0015630,GO:0015631,GO:0017016,GO:0017048,GO:0019899,GO:0019932,GO:0019933,GO:0019935,GO:0023052,GO:0031267,GO:0031592,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0035556,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044380,GO:0044422,GO:0044424,GO:0044427,GO:0044430,GO:0044444,GO:0044446,GO:0044450,GO:0044464,GO:0044877,GO:0045504,GO:0050789,GO:0050794,GO:0050896,GO:0051020,GO:0051179,GO:0051640,GO:0051641,GO:0051642,GO:0051645,GO:0051716,GO:0061842,GO:0065007,GO:0070727,GO:0070840,GO:0071539,GO:0071944,GO:0072698,GO:0098687,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:0099568,GO:1905508
EggNOG free text desc.cell division
EggNOG OGsKOG0295@1,KOG0295@2759
COG Functional cat.D
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036,ko04147
Exons1
Model size231
Cds size228
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930545.880622-CDS-H-paniculata_contig5354:4628..48561622930545.880622-CDS-H-paniculata_contig5354:4628..4856Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5354 4629..4856 -
1691481342.2006037-CDS-H-paniculata_contig5354:4628..48561691481342.2006037-CDS-H-paniculata_contig5354:4628..4856Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5354 4629..4856 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930545.8928902-UTR-H-paniculata_contig5354:4856..48591622930545.8928902-UTR-H-paniculata_contig5354:4856..4859Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5354 4857..4859 -
1691481342.21663-UTR-H-paniculata_contig5354:4856..48591691481342.21663-UTR-H-paniculata_contig5354:4856..4859Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5354 4857..4859 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5354.12774.1prot_H-paniculata_contig5354.12774.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5354 4629..4856 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5354.12774.1

>prot_H-paniculata_contig5354.12774.1 ID=prot_H-paniculata_contig5354.12774.1|Name=mRNA_H-paniculata_contig5354.12774.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=76bp
MDLEARLEQAQQDLKSGVRPGKDRSGPGDRVLPRAPAKVSLSGHRNPVTC
VALHPLYSVVASASEDATVKVRRLGV
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mRNA from alignment at H-paniculata_contig5354:4629..4859-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5354.12774.1 ID=mRNA_H-paniculata_contig5354.12774.1|Name=mRNA_H-paniculata_contig5354.12774.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=231bp|location=Sequence derived from alignment at H-paniculata_contig5354:4629..4859- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGATGGACCTCGAAGCGCGACTGGAGCAGGCGCAACAGGACTTGAAGAG
TGGGGTCCGACCGGGAAAGGACCGGAGCGGGCCGGGAGATCGGGTTTTGC
CGAGGGCTCCGGCGAAGGTGTCGCTGTCGGGGCACCGGAATCCGGTCACG
TGCGTCGCGCTACATCCCTTGTACAGTGTGGTGGCTTCGGCTAGCGAGGA
CGCCACTGTCAAGGTGCGAAGGTTGGGGGTT
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Coding sequence (CDS) from alignment at H-paniculata_contig5354:4629..4859-

>mRNA_H-paniculata_contig5354.12774.1 ID=mRNA_H-paniculata_contig5354.12774.1|Name=mRNA_H-paniculata_contig5354.12774.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=456bp|location=Sequence derived from alignment at H-paniculata_contig5354:4629..4859- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGACCTCGAAGCGCGACTGGAGCAGGCGCAACAGGACTTGAAGAGTGG
GGTCCGACCGGGAAAGGACCGGAGCGGGCCGGGAGATCGGGTTTTGCCGA
GGGCTCCGGCGAAGGTGTCGCTGTCGGGGCACCGGAATCCGGTCACGTGC
GTCGCGCTACATCCCTTGTACAGTGTGGTGGCTTCGGCTAGCGAGGACGC
CACTGTCAAGGTGCGAAGGTTGGGGGTTATGGACCTCGAAGCGCGACTGG
AGCAGGCGCAACAGGACTTGAAGAGTGGGGTCCGACCGGGAAAGGACCGG
AGCGGGCCGGGAGATCGGGTTTTGCCGAGGGCTCCGGCGAAGGTGTCGCT
GTCGGGGCACCGGAATCCGGTCACGTGCGTCGCGCTACATCCCTTGTACA
GTGTGGTGGCTTCGGCTAGCGAGGACGCCACTGTCAAGGTGCGAAGGTTG
GGGGTT
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