mRNA_H-paniculata_contig5352.12773.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5352.12773.1
Unique NamemRNA_H-paniculata_contig5352.12773.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5352.12773.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5352contigH-paniculata_contig5352:6596..9530 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1304
Cds size876
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5352.12773.1prot_H-paniculata_contig5352.12773.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5352 6596..8321 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930545.786182-CDS-H-paniculata_contig5352:6595..71641622930545.786182-CDS-H-paniculata_contig5352:6595..7164Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5352 6596..7164 -
1691481342.1525972-CDS-H-paniculata_contig5352:6595..71641691481342.1525972-CDS-H-paniculata_contig5352:6595..7164Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5352 6596..7164 -
1622930545.8021092-CDS-H-paniculata_contig5352:8014..83211622930545.8021092-CDS-H-paniculata_contig5352:8014..8321Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5352 8015..8321 -
1691481342.1627529-CDS-H-paniculata_contig5352:8014..83211691481342.1627529-CDS-H-paniculata_contig5352:8014..8321Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5352 8015..8321 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930545.81865-UTR-H-paniculata_contig5352:8321..85661622930545.81865-UTR-H-paniculata_contig5352:8321..8566Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5352 8322..8566 -
1691481342.1766198-UTR-H-paniculata_contig5352:8321..85661691481342.1766198-UTR-H-paniculata_contig5352:8321..8566Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5352 8322..8566 -
1622930545.8372705-UTR-H-paniculata_contig5352:9348..95301622930545.8372705-UTR-H-paniculata_contig5352:9348..9530Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5352 9349..9530 -
1691481342.1903608-UTR-H-paniculata_contig5352:9348..95301691481342.1903608-UTR-H-paniculata_contig5352:9348..9530Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5352 9349..9530 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5352.12773.1

>prot_H-paniculata_contig5352.12773.1 ID=prot_H-paniculata_contig5352.12773.1|Name=mRNA_H-paniculata_contig5352.12773.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=292bp
MDEHLRDGSTVGGSFPANVTPQTPPYQSAHSTTTGANLKKPSPAEAAAAA
SSNNMGNMGGRENGDHSTYPEGATAPSSKEFTDTAATNVEDEAVGGKASA
GPAAPDAAFTTIKTMSSTASQPPALLPSTQRTQAAVTSPQSVSPAAVSVI
TSAGFPMAHRQTFRDGGTIPTNTTATAGNTLAADTTAGNNADANVNIPSS
AAATTTLADAGSTEHKEVVASSDNAIVAFTPATNNNNATTTITNTTNDND
DMDEEELDVGTGTEGNPVDGIEGGNEAGGGAMQLLPPSDIGA
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mRNA from alignment at H-paniculata_contig5352:6596..9530-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5352.12773.1 ID=mRNA_H-paniculata_contig5352.12773.1|Name=mRNA_H-paniculata_contig5352.12773.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2935bp|location=Sequence derived from alignment at H-paniculata_contig5352:6596..9530- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTCCCAAACAGCAAAAACACCTGCCGCCTTTCAGCTACTGCGTTGTTGTT
GTAGTTGTAGTAGTAGTAGTTGTTGTTGTTGTTATTGTTCTTGAAACCTC
AGCACTCCAGGCATCGATCGAGTTTAACACTACAACCAGCAACCCGTTAG
ACCACGTAAAGGGATCGTTTCAAAATACGCAGGTAAGAGGCGTGCTGCTA
TCGTTTCAAAAACTTATATTCTACTTGTTGTAAGTACGTACTTGGTCTGT
CTTCTTAACCGCAGACAAGCAGACAGATACAGACAGTCGGTACAGTCAGT
GTTATACACATGCCCCCTTCAGTCTCTTTAATTTTCATGTGTATGAAAAA
TGAAAGCGGTATGGAGGTGACGGAGGATTTGCTTTGTGGTTGGGGTGGAT
GGAGTGACGACTTGTTAATTTGCTGTTGTTGTTGACTGTGGGTTTTGACT
GCTTCGTTGCACTTGTATTCAAATACCAACTTGATGAGATGCTACAAGTT
ATTTAAGAAGTTATTTAAGTGGAAGACGGGTATTCTGCGTAGTTTCGATC
TCTGTTGTTTGCGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTAATGGGAG
AGAGGATCGGATGACGATGAACGAAGATGGAAAATAACATGACGTTACCA
CTTGTTATTTGGTTTGGGGGCAAAACGGAAACAGTGATTGTGTGTTTATG
TAGGCAAATAATGAACTTGACGTGGTGTTTTTTTTACCTACGTGTAGTAA
GGAAAAAAAACGAAAATACACACACACACTTTAGACGGTGTGTGGCGAAA
AGTAATGGCGGAGGGGGGGGGGCGGGGGGGTCACCTACACACACATACGG
GAGAGAGGATGATGTGAGCTGGAATAGGTAAACAAAAACAAAATAACTTC
GTTTAAATGTGTGTATCGTAATCTTTCCCATATGTACCGCTATCAACCTT
GTGTGTGTGCGAAGTTCAATCGCAGATTGGCCTCGGACTGGCTCTACAGA
CAACGAAATACAGGAGGAAGACAAAAAAAATGTAGAGTTTACAACAACCG
CGCTGACTTGCCCCCTAATTTATTCTGCCGGTTTTGTAACACGTCATGAC
ACTCGTCATTTCGTATTTTGGAGGGTTGGATCCGGTGTACCGCAGCCGTC
AGCGCAGGCAGGCAGGCGTAGCACGACTGACAAACACCGCCTCTGCCTAG
TGCTCCCACATGGATGAGCATCTTCGAGATGGTTCAACTGTAGGTGGAAG
CTTTCCTGCGAACGTAACCCCACAAACGCCGCCCTATCAGTCGGCGCACT
CGACCACTACTGGAGCCAATTTGAAAAAACCATCGCCGGCTGAAGCTGCA
GCCGCTGCTTCCAGCAATAACATGGGCAACATGGGCGGGAGAGAGAATGG
TGACCACAGCACTTACCCCGAAGGAGCTACTGCGCCTTCAAGTAAAGAAT
TTACTGATACTGCTGCTACTAATGTAGAAGATGAAGCTGTGGGTGGGAAA
GCTAGTGCTGGACCAGGTTAGCTGCGGCAACTACGGCGGACTCTCTGTTT
TACGTTGGTACTTCAAAACCTTCAGCGGTGCAGTTAGTCTTTTTACATTT
CAAGAACAACACTGGCTGTAGAACAGTCTAGTTAGTGCATGCAGTTAAAA
AATAGTAGCGTTTGGACTAACATGTACAGACCGTCCAATACTCATGTGCT
TGAGCTGCAAGTCGCCTGTATTGTCAAATACTTTGATCATGGGGAACAAC
TAGGTCGTTGACTGTGTGATGTGCGCCATTTTAGAGGTCGTATTGTGTAA
ACCGCGTGTCGGTGCCCTTTTGAGTCGGTTGCCAAAGTTGTGTACATCAT
CGTTGTATGAAGAAGATGCGGCCCTTACGCTGCATTTTTGAAATTCGGCT
CCTTTTTTTTCAATTTTCAAATCGTAACGACACGCCGACATGGACTGTGT
TTGCTGTTTACTGTTTGCCGTTTACTCTCTGTACTGATTGTATGATCTGT
ACATACTGCACTGTATGTGGGGAACATCGCAGGTTGAAATAATGTCGCCA
TGCGGTGATATTGCGCACACACCGACGCACACTTTACTCGTATGTACCAT
GCGACTACCCTAGTGTCATGGTCATTTCAAGTACAGTATCGAAGTTGATG
TCCATCCTTAACCCTCTCGACCTCGCTCGGTGGGTCTGCAAACCCAGGGG
TGAATGTCCCTACAGCTACTCACTATTATACTGTTATACGGTATTGAAAA
ATCGATGTCTAGTCCACAATCCTGCACCATACAGTCGTCTGGTACTTTAA
ATCCTAAATCTTTACTTTTACTGAAGTCGGCTTCTTTCATTCGTTACTTT
GGGCCATTCTGTGCAGCTGCACCAGATGCCGCCTTCACCACCATCAAGAC
CATGTCTTCCACGGCATCTCAACCACCAGCTTTGTTGCCATCTACACAAC
GCACACAGGCAGCTGTTACCTCTCCTCAAAGCGTCTCGCCAGCAGCTGTC
TCAGTTATAACAAGCGCGGGTTTTCCGATGGCCCACCGCCAAACCTTCCG
CGACGGCGGTACAATCCCCACCAATACCACCGCCACCGCTGGCAACACTC
TCGCCGCCGACACCACTGCCGGTAACAACGCCGACGCCAACGTCAACATC
CCGTCGTCGGCCGCAGCCACGACAACCCTCGCCGATGCGGGCTCGACCGA
GCACAAGGAAGTTGTTGCTTCCAGTGACAACGCCATTGTCGCCTTCACCC
CTGCCACAAACAACAATAACGCCACCACCACGATCACCAACACCACCAAC
GACAACGACGACATGGACGAAGAAGAATTGGACGTTGGCACGGGTACTGA
GGGCAATCCTGTGGACGGCATCGAAGGCGGAAACGAAGCAGGCGGCGGAG
CCATGCAACTGTTACCTCCGTCCGATATCGGTGCT
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Coding sequence (CDS) from alignment at H-paniculata_contig5352:6596..9530-

>mRNA_H-paniculata_contig5352.12773.1 ID=mRNA_H-paniculata_contig5352.12773.1|Name=mRNA_H-paniculata_contig5352.12773.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1752bp|location=Sequence derived from alignment at H-paniculata_contig5352:6596..9530- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGATGAGCATCTTCGAGATGGTTCAACTGTAGGTGGAAGCTTTCCTGC
GAACGTAACCCCACAAACGCCGCCCTATCAGTCGGCGCACTCGACCACTA
CTGGAGCCAATTTGAAAAAACCATCGCCGGCTGAAGCTGCAGCCGCTGCT
TCCAGCAATAACATGGGCAACATGGGCGGGAGAGAGAATGGTGACCACAG
CACTTACCCCGAAGGAGCTACTGCGCCTTCAAGTAAAGAATTTACTGATA
CTGCTGCTACTAATGTAGAAGATGAAGCTGTGGGTGGGAAAGCTAGTGCT
GGACCAGATGGATGAGCATCTTCGAGATGGTTCAACTGTAGGTGGAAGCT
TTCCTGCGAACGTAACCCCACAAACGCCGCCCTATCAGTCGGCGCACTCG
ACCACTACTGGAGCCAATTTGAAAAAACCATCGCCGGCTGAAGCTGCAGC
CGCTGCTTCCAGCAATAACATGGGCAACATGGGCGGGAGAGAGAATGGTG
ACCACAGCACTTACCCCGAAGGAGCTACTGCGCCTTCAAGTAAAGAATTT
ACTGATACTGCTGCTACTAATGTAGAAGATGAAGCTGTGGGTGGGAAAGC
TAGTGCTGGACCAGCTGCACCAGATGCCGCCTTCACCACCATCAAGACCA
TGTCTTCCACGGCATCTCAACCACCAGCTTTGTTGCCATCTACACAACGC
ACACAGGCAGCTGTTACCTCTCCTCAAAGCGTCTCGCCAGCAGCTGTCTC
AGTTATAACAAGCGCGGGTTTTCCGATGGCCCACCGCCAAACCTTCCGCG
ACGGCGGTACAATCCCCACCAATACCACCGCCACCGCTGGCAACACTCTC
GCCGCCGACACCACTGCCGGTAACAACGCCGACGCCAACGTCAACATCCC
GTCGTCGGCCGCAGCCACGACAACCCTCGCCGATGCGGGCTCGACCGAGC
ACAAGGAAGTTGTTGCTTCCAGTGACAACGCCATTGTCGCCTTCACCCCT
GCCACAAACAACAATAACGCCACCACCACGATCACCAACACCACCAACGA
CAACGACGACATGGACGAAGAAGAATTGGACGTTGGCACGGGTACTGAGG
GCAATCCTGTGGACGGCATCGAAGGCGGAAACGAAGCAGGCGGCGGAGCC
ATGCAACTGTTACCTCCGTCCGATATCGGTGCTCTGCACCAGATGCCGCC
TTCACCACCATCAAGACCATGTCTTCCACGGCATCTCAACCACCAGCTTT
GTTGCCATCTACACAACGCACACAGGCAGCTGTTACCTCTCCTCAAAGCG
TCTCGCCAGCAGCTGTCTCAGTTATAACAAGCGCGGGTTTTCCGATGGCC
CACCGCCAAACCTTCCGCGACGGCGGTACAATCCCCACCAATACCACCGC
CACCGCTGGCAACACTCTCGCCGCCGACACCACTGCCGGTAACAACGCCG
ACGCCAACGTCAACATCCCGTCGTCGGCCGCAGCCACGACAACCCTCGCC
GATGCGGGCTCGACCGAGCACAAGGAAGTTGTTGCTTCCAGTGACAACGC
CATTGTCGCCTTCACCCCTGCCACAAACAACAATAACGCCACCACCACGA
TCACCAACACCACCAACGACAACGACGACATGGACGAAGAAGAATTGGAC
GTTGGCACGGGTACTGAGGGCAATCCTGTGGACGGCATCGAAGGCGGAAA
CGAAGCAGGCGGCGGAGCCATGCAACTGTTACCTCCGTCCGATATCGGTG
CT
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