mRNA_H-paniculata_contig535.12769.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig535.12769.1
Unique NamemRNA_H-paniculata_contig535.12769.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig535.12769.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig535contigH-paniculata_contig535:16003..16745 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size745
Cds size456
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930545.131815-UTR-H-paniculata_contig535:16002..162891622930545.131815-UTR-H-paniculata_contig535:16002..16289Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig535 16003..16289 +
1691481341.846309-UTR-H-paniculata_contig535:16002..162891691481341.846309-UTR-H-paniculata_contig535:16002..16289Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig535 16003..16289 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930545.1442394-CDS-H-paniculata_contig535:16289..167451622930545.1442394-CDS-H-paniculata_contig535:16289..16745Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig535 16290..16745 +
1691481341.8549416-CDS-H-paniculata_contig535:16289..167451691481341.8549416-CDS-H-paniculata_contig535:16289..16745Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig535 16290..16745 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig535.12769.1prot_H-paniculata_contig535.12769.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig535 16290..16745 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig535.12769.1

>prot_H-paniculata_contig535.12769.1 ID=prot_H-paniculata_contig535.12769.1|Name=mRNA_H-paniculata_contig535.12769.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=152bp
MITPAIISPHTRRKSTRSRKIRNTKHKAVGLKVEHTPWWSLDAFFPLSCV
KIQALVSFRCHSWLQASEFKRTVLVLSAASVYTKILRIKPRKQWNGLTLK
LGTGHVAVPPSPAACTHRPRRHHVANTLPPVKKPRGWAMRLARYKKIDSR
RR
back to top

mRNA from alignment at H-paniculata_contig535:16003..16745+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig535.12769.1 ID=mRNA_H-paniculata_contig535.12769.1|Name=mRNA_H-paniculata_contig535.12769.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=743bp|location=Sequence derived from alignment at H-paniculata_contig535:16003..16745+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTGGTTTGTTATTACAAGTGTCATAAACCCCACAACTACCTCCCCAGTGC
AAACAAGTCCACCCTAATTCGAAATCAAAATAACGCCGTCCCATCACCTT
CAGACTTGCGATACAGTACAACGTGCTAGTACGATAGACTGGCTTTTTCA
CACTCGAACTCCTATACAAAGATGATGCCGATGAAGAAGTGTCAACACAT
ACTAACTGCTGTGATGAAAAGCGGCATGTCCGACGGAATCGTTGTTGTCC
TCTCCTTTATACACATGTCGCTCTTGAGCGTCGAGATATGATTACGCCGG
CGATTATCTCACCACATACCCGGCGAAAAAGTACGCGTAGCAGAAAAATC
AGAAACACCAAACACAAGGCGGTGGGTCTGAAGGTGGAACATACTCCTTG
GTGGTCACTAGACGCCTTCTTCCCTCTTTCGTGTGTAAAGATACAAGCGT
TAGTATCATTTAGGTGCCACAGCTGGTTGCAAGCTTCGGAGTTCAAACGA
ACCGTACTCGTACTCAGTGCCGCATCCGTGTATACAAAAATCTTAAGAAT
CAAACCGCGGAAGCAGTGGAACGGGCTAACACTGAAGCTGGGCACAGGCC
ACGTAGCTGTCCCCCCTTCTCCCGCTGCCTGCACACACAGGCCTCGTAGG
CATCACGTCGCGAACACCTTGCCCCCCGTGAAGAAACCAAGAGGGTGGGC
TATGCGTCTGGCTCGCTACAAGAAAATCGACAGTCGTCGGCGA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig535:16003..16745+

>mRNA_H-paniculata_contig535.12769.1 ID=mRNA_H-paniculata_contig535.12769.1|Name=mRNA_H-paniculata_contig535.12769.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=912bp|location=Sequence derived from alignment at H-paniculata_contig535:16003..16745+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATTACGCCGGCGATTATCTCACCACATACCCGGCGAAAAAGTACGCG
TAGCAGAAAAATCAGAAACACCAAACACAAGGCGGTGGGTCTGAAGGTGG
AACATACTCCTTGGTGGTCACTAGACGCCTTCTTCCCTCTTTCGTGTGTA
AAGATACAAGCGTTAGTATCATTTAGGTGCCACAGCTGGTTGCAAGCTTC
GGAGTTCAAACGAACCGTACTCGTACTCAGTGCCGCATCCGTGTATACAA
AAATCTTAAGAATCAAACCGCGGAAGCAGTGGAACGGGCTAACACTGAAG
CTGGGCACAGGCCACGTAGCTGTCCCCCCTTCTCCCGCTGCCTGCACACA
CAGGCCTCGTAGGCATCACGTCGCGAACACCTTGCCCCCCGTGAAGAAAC
CAAGAGGGTGGGCTATGCGTCTGGCTCGCTACAAGAAAATCGACAGTCGT
CGGCGAATGATTACGCCGGCGATTATCTCACCACATACCCGGCGAAAAAG
TACGCGTAGCAGAAAAATCAGAAACACCAAACACAAGGCGGTGGGTCTGA
AGGTGGAACATACTCCTTGGTGGTCACTAGACGCCTTCTTCCCTCTTTCG
TGTGTAAAGATACAAGCGTTAGTATCATTTAGGTGCCACAGCTGGTTGCA
AGCTTCGGAGTTCAAACGAACCGTACTCGTACTCAGTGCCGCATCCGTGT
ATACAAAAATCTTAAGAATCAAACCGCGGAAGCAGTGGAACGGGCTAACA
CTGAAGCTGGGCACAGGCCACGTAGCTGTCCCCCCTTCTCCCGCTGCCTG
CACACACAGGCCTCGTAGGCATCACGTCGCGAACACCTTGCCCCCCGTGA
AGAAACCAAGAGGGTGGGCTATGCGTCTGGCTCGCTACAAGAAAATCGAC
AGTCGTCGGCGA
back to top