mRNA_H-paniculata_contig53495.12766.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig53495.12766.1
Unique NamemRNA_H-paniculata_contig53495.12766.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig53495.12766.1 vs. uniprot
Match: A0A6H5K9E0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9E0_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 1.190e-12
Identity = 32/64 (50.00%), Postives = 40/64 (62.50%), Query Frame = 1
Query:    1 VYVDDGVLWAEDEGELLRRLDLVLERLMAVGLFAAAHKAVFYTPTVHWCGKIYLGTGVKHDPER 192
            V+VDD V W  DE +L   LD +L RL   G+FAAAH  +F+   + WCGK+Y G  V HDP R
Sbjct:  620 VWVDDVVWWGIDETDLPNALDEILRRLEDKGIFAAAHMCLFFDTKIKWCGKVYSGGQVAHDPAR 683          
BLAST of mRNA_H-paniculata_contig53495.12766.1 vs. uniprot
Match: A0A0G4J2M7_PLABS (Reverse transcriptase domain-containing protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4J2M7_PLABS)

HSP 1 Score: 59.7 bits (143), Expect = 3.780e-9
Identity = 29/64 (45.31%), Postives = 38/64 (59.38%), Query Frame = 1
Query:    1 VYVDDGVLWAEDEGELLRRLDLVLERLMAVGLFAAAHKAVFYTPTVHWCGKIYLGTGVKHDPER 192
            V++DD + +A+ E ELL  L  V ER   VGL     K   +   + WCGKIY G G++HDPER
Sbjct:   14 VWIDDLLGFAKTEAELLELLANVFERAREVGLKFNPTKCTIFARELVWCGKIYSGNGIRHDPER 77          
BLAST of mRNA_H-paniculata_contig53495.12766.1 vs. uniprot
Match: A0A6A3X8Z5_9STRA (Reverse transcriptase domain-containing protein n=2 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3X8Z5_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 7.890e-7
Identity = 24/64 (37.50%), Postives = 38/64 (59.38%), Query Frame = 1
Query:    1 VYVDDGVLWAEDEGELLRRLDLVLERLMAVGLFAAAHKAVFYTPTVHWCGKIYLGTGVKHDPER 192
            V++DD +++A+ E EL+  ++ VL +L   GL     K+  +   V WCG+I    G+ HDPER
Sbjct:   68 VWIDDLLVFADTEEELVDAIEAVLTKLGEYGLKLNPKKSALFLTEVRWCGRIINKDGIGHDPER 131          
BLAST of mRNA_H-paniculata_contig53495.12766.1 vs. uniprot
Match: A0A6H5L1I2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1I2_9PHAE)

HSP 1 Score: 53.9 bits (128), Expect = 8.130e-7
Identity = 25/51 (49.02%), Postives = 32/51 (62.75%), Query Frame = 1
Query:    1 VYVDDGVLWAEDEGELLRRLDLVLERLMAVGLFAAAHKAVFYTPTVHWCGK 153
            V+VDD   W  DE +LL  LD +L RL   G+FAAAHK +F+   +  CGK
Sbjct:  510 VWVDDVAWWGIDETDLLNTLDEILRRLEDKGIFAAAHKCLFFDTKIKCCGK 560          
BLAST of mRNA_H-paniculata_contig53495.12766.1 vs. uniprot
Match: A0A2P4YJ51_9STRA (Uncharacterized protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YJ51_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 1.530e-6
Identity = 23/64 (35.94%), Postives = 37/64 (57.81%), Query Frame = 1
Query:    1 VYVDDGVLWAEDEGELLRRLDLVLERLMAVGLFAAAHKAVFYTPTVHWCGKIYLGTGVKHDPER 192
            V++DD +++AE + ELL  +D VL++L   G      K   +   + WCG+I    G+ +DPER
Sbjct:  346 VWIDDLLVFAETQSELLDAIDAVLQKLDEYGFILNPKKCSLFRTEIQWCGRIINKNGIGYDPER 409          
BLAST of mRNA_H-paniculata_contig53495.12766.1 vs. uniprot
Match: A0A2P4Y427_9STRA (Reverse transcriptase domain-containing protein n=2 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4Y427_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 2.070e-6
Identity = 25/64 (39.06%), Postives = 38/64 (59.38%), Query Frame = 1
Query:    1 VYVDDGVLWAEDEGELLRRLDLVLERLMAVGLFAAAHKAVFYTPTVHWCGKIYLGTGVKHDPER 192
            V++DD +++A  + EL+  +D+VL +L   GL     K+  +   V WCG+I    GV HDPER
Sbjct:  515 VWIDDLLVFANTQEELVGAIDVVLTKLDEHGLILNPKKSTVFLKEVRWCGRIINQHGVGHDPER 578          
BLAST of mRNA_H-paniculata_contig53495.12766.1 vs. uniprot
Match: A0A6A3KVD3_9STRA (Reverse transcriptase domain-containing protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3KVD3_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 2.090e-6
Identity = 24/64 (37.50%), Postives = 38/64 (59.38%), Query Frame = 1
Query:    1 VYVDDGVLWAEDEGELLRRLDLVLERLMAVGLFAAAHKAVFYTPTVHWCGKIYLGTGVKHDPER 192
            V++DD +++A+ E EL+  ++ VL +L   GL     K+  +   V WCG+I    G+ HDPER
Sbjct:  728 VWIDDLLVFADTEEELVDAIEAVLTKLDGYGLKLNPKKSALFLTEVRWCGRIINKDGIGHDPER 791          
BLAST of mRNA_H-paniculata_contig53495.12766.1 vs. uniprot
Match: UPI0015C30EBE (Reverse transcriptase domain protein n=1 Tax=Lasiodiplodia theobromae TaxID=45133 RepID=UPI0015C30EBE)

HSP 1 Score: 52.4 bits (124), Expect = 2.860e-6
Identity = 25/64 (39.06%), Postives = 42/64 (65.62%), Query Frame = 1
Query:    1 VYVDDGVLWAEDEGELLRRLDLVLERLMAVGLFAAAHKAVFYTPTVHWCGKIYLGTGVKHDPER 192
            VY+DD ++++E+E + ++ ++ VL+RL   GL+A   K VF+T TV + G +    G+  DPER
Sbjct:   76 VYLDDILIYSENEKDHVQHVNSVLQRLGEWGLYAKLSKCVFHTKTVEFLGFVVTPEGIVMDPER 139          
BLAST of mRNA_H-paniculata_contig53495.12766.1 vs. uniprot
Match: A0A225UZ40_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225UZ40_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 5.360e-6
Identity = 23/64 (35.94%), Postives = 37/64 (57.81%), Query Frame = 1
Query:    1 VYVDDGVLWAEDEGELLRRLDLVLERLMAVGLFAAAHKAVFYTPTVHWCGKIYLGTGVKHDPER 192
            V++DD +++A+ + EL+  +D VL +L   G      K+  +   V WCG+I    G+ HDPER
Sbjct:   82 VWIDDLLIFADTQEELVDAIDAVLTKLDEFGFVVNPKKSSLFLSEVRWCGRIINKHGIGHDPER 145          
BLAST of mRNA_H-paniculata_contig53495.12766.1 vs. uniprot
Match: A0A225W3Q4_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225W3Q4_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 5.400e-6
Identity = 24/64 (37.50%), Postives = 38/64 (59.38%), Query Frame = 1
Query:    1 VYVDDGVLWAEDEGELLRRLDLVLERLMAVGLFAAAHKAVFYTPTVHWCGKIYLGTGVKHDPER 192
            V++DD +++A+ + EL+  ++ VL +L   GL     K+  +   V WCG+I    GV HDPER
Sbjct:  680 VWIDDLLVFADTQKELVDAIEAVLTKLDEHGLILNPKKSTVFLKEVRWCGRIINQHGVDHDPER 743          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig53495.12766.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
A0A6H5K9E0_9PHAE1.190e-1250.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A0G4J2M7_PLABS3.780e-945.31Reverse transcriptase domain-containing protein n=... [more]
A0A6A3X8Z5_9STRA7.890e-737.50Reverse transcriptase domain-containing protein n=... [more]
A0A6H5L1I2_9PHAE8.130e-749.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A2P4YJ51_9STRA1.530e-635.94Uncharacterized protein n=1 Tax=Phytophthora palmi... [more]
A0A2P4Y427_9STRA2.070e-639.06Reverse transcriptase domain-containing protein n=... [more]
A0A6A3KVD3_9STRA2.090e-637.50Reverse transcriptase domain-containing protein n=... [more]
UPI0015C30EBE2.860e-639.06Reverse transcriptase domain protein n=1 Tax=Lasio... [more]
A0A225UZ40_9STRA5.360e-635.94Uncharacterized protein n=1 Tax=Phytophthora megak... [more]
A0A225W3Q4_9STRA5.400e-637.50Uncharacterized protein n=1 Tax=Phytophthora megak... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig53495contigH-paniculata_contig53495:148..341 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size194
Cds size192
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930545.0125253-CDS-H-paniculata_contig53495:147..3391622930545.0125253-CDS-H-paniculata_contig53495:147..339Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig53495 148..339 +
1691481341.8127422-CDS-H-paniculata_contig53495:147..3391691481341.8127422-CDS-H-paniculata_contig53495:147..339Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig53495 148..339 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig53495.12766.1prot_H-paniculata_contig53495.12766.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig53495 148..339 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig53495.12766.1

>prot_H-paniculata_contig53495.12766.1 ID=prot_H-paniculata_contig53495.12766.1|Name=mRNA_H-paniculata_contig53495.12766.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=64bp
VYVDDGVLWAEDEGELLRRLDLVLERLMAVGLFAAAHKAVFYTPTVHWCG
KIYLGTGVKHDPER
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mRNA from alignment at H-paniculata_contig53495:148..341+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig53495.12766.1 ID=mRNA_H-paniculata_contig53495.12766.1|Name=mRNA_H-paniculata_contig53495.12766.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=194bp|location=Sequence derived from alignment at H-paniculata_contig53495:148..341+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTCTACGTCGACGATGGGGTGTTGTGGGCCGAGGATGAGGGAGAGCTGCT GAGGCGCCTCGACCTGGTTCTGGAGCGATTGATGGCGGTGGGGCTGTTCG CGGCGGCGCACAAAGCCGTGTTCTACACCCCCACCGTCCACTGGTGTGGC AAGATCTACTTGGGGACCGGCGTGAAGCACGACCCGGAGCGGAT
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Coding sequence (CDS) from alignment at H-paniculata_contig53495:148..341+

>mRNA_H-paniculata_contig53495.12766.1 ID=mRNA_H-paniculata_contig53495.12766.1|Name=mRNA_H-paniculata_contig53495.12766.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=384bp|location=Sequence derived from alignment at H-paniculata_contig53495:148..341+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTCTACGTCGACGATGGGGTGTTGTGGGCCGAGGATGAGGGAGAGCTGCT
GAGGCGCCTCGACCTGGTTCTGGAGCGATTGATGGCGGTGGGGCTGTTCG
CGGCGGCGCACAAAGCCGTGTTCTACACCCCCACCGTCCACTGGTGTGGC
AAGATCTACTTGGGGACCGGCGTGAAGCACGACCCGGAGCGGGTCTACGT
CGACGATGGGGTGTTGTGGGCCGAGGATGAGGGAGAGCTGCTGAGGCGCC
TCGACCTGGTTCTGGAGCGATTGATGGCGGTGGGGCTGTTCGCGGCGGCG
CACAAAGCCGTGTTCTACACCCCCACCGTCCACTGGTGTGGCAAGATCTA
CTTGGGGACCGGCGTGAAGCACGACCCGGAGCGG
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