mRNA_H-paniculata_contig53455.12761.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig53455.12761.1
Unique NamemRNA_H-paniculata_contig53455.12761.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig53455.12761.1 vs. uniprot
Match: D8LES5_ECTSI (UVR domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LES5_ECTSI)

HSP 1 Score: 94.0 bits (232), Expect = 4.040e-21
Identity = 44/53 (83.02%), Postives = 49/53 (92.45%), Query Frame = 1 
Query:    1 ETRSVSLLEEFSPRQFFLKMYLPYFDMFAQGFTPWAPDGKSFAYVAADAAFVQ 159
            ETR V LL+EFSPR FFLKMYLPYFDMFAQGFTPWAPD KSF+YV+A+A+FVQ
Sbjct:  627 ETRDVQLLDEFSPRPFFLKMYLPYFDMFAQGFTPWAPDSKSFSYVSAEASFVQ 679
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BLAST of mRNA_H-paniculata_contig53455.12761.1 vs. uniprot
Match: A0A7S3XSM8_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XSM8_HETAK)

HSP 1 Score: 66.6 bits (161), Expect = 1.630e-11
Identity = 28/53 (52.83%), Postives = 41/53 (77.36%), Query Frame = 1 
Query:    1 ETRSVSLLEEFSPRQFFLKMYLPYFDMFAQGFTPWAPDGKSFAYVAADAAFVQ 159
            +T  V+   EF+PR F++K+YLP+FD +AQ +TPW+PD +SF YV+ + AFVQ
Sbjct:  346 DTGKVTNYPEFTPRTFYIKVYLPFFDQYAQSYTPWSPDSQSFGYVSQEGAFVQ 398
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BLAST of mRNA_H-paniculata_contig53455.12761.1 vs. uniprot
Match: A0A7S1TSH1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TSH1_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 2.040e-10
Identity = 25/44 (56.82%), Postives = 36/44 (81.82%), Query Frame = 1 
Query:   28 EFSPRQFFLKMYLPYFDMFAQGFTPWAPDGKSFAYVAADAAFVQ 159
            +F+PR +F+++YLP+FD +AQ FTPW+PD KSF +VA +  FVQ
Sbjct:  592 QFTPRPYFMRLYLPFFDQYAQSFTPWSPDSKSFVFVAQEGVFVQ 635
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig53455.12761.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LES5_ECTSI4.040e-2183.02UVR domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A7S3XSM8_HETAK1.630e-1152.83Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S1TSH1_9STRA2.040e-1056.82Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig53455contigH-paniculata_contig53455:228..386 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score95.9
Seed ortholog evalue6e-18
Seed eggNOG ortholog2880.D8LES5
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG OGs2EPPI@1,2SSUW@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size159
Cds size159
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930544.2178597-CDS-H-paniculata_contig53455:227..3861622930544.2178597-CDS-H-paniculata_contig53455:227..386Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig53455 228..386 +
1691481341.4350185-CDS-H-paniculata_contig53455:227..3861691481341.4350185-CDS-H-paniculata_contig53455:227..386Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig53455 228..386 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig53455.12761.1prot_H-paniculata_contig53455.12761.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig53455 228..386 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig53455.12761.1

>prot_H-paniculata_contig53455.12761.1 ID=prot_H-paniculata_contig53455.12761.1|Name=mRNA_H-paniculata_contig53455.12761.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=53bp
ETRSVSLLEEFSPRQFFLKMYLPYFDMFAQGFTPWAPDGKSFAYVAADAA
FVQ
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mRNA from alignment at H-paniculata_contig53455:228..386+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig53455.12761.1 ID=mRNA_H-paniculata_contig53455.12761.1|Name=mRNA_H-paniculata_contig53455.12761.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=159bp|location=Sequence derived from alignment at H-paniculata_contig53455:228..386+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGACACGGAGCGTGTCGTTGCTAGAGGAGTTTTCGCCCAGGCAGTTCTT
TCTCAAGATGTACCTCCCGTACTTCGACATGTTCGCTCAGGGCTTTACGC
CGTGGGCGCCCGATGGAAAGTCGTTTGCGTACGTCGCCGCCGACGCAGCG
TTTGTGCAG
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Coding sequence (CDS) from alignment at H-paniculata_contig53455:228..386+

>mRNA_H-paniculata_contig53455.12761.1 ID=mRNA_H-paniculata_contig53455.12761.1|Name=mRNA_H-paniculata_contig53455.12761.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=318bp|location=Sequence derived from alignment at H-paniculata_contig53455:228..386+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGACACGGAGCGTGTCGTTGCTAGAGGAGTTTTCGCCCAGGCAGTTCTT
TCTCAAGATGTACCTCCCGTACTTCGACATGTTCGCTCAGGGCTTTACGC
CGTGGGCGCCCGATGGAAAGTCGTTTGCGTACGTCGCCGCCGACGCAGCG
TTTGTGCAGGAGACACGGAGCGTGTCGTTGCTAGAGGAGTTTTCGCCCAG
GCAGTTCTTTCTCAAGATGTACCTCCCGTACTTCGACATGTTCGCTCAGG
GCTTTACGCCGTGGGCGCCCGATGGAAAGTCGTTTGCGTACGTCGCCGCC
GACGCAGCGTTTGTGCAG
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