mRNA_H-paniculata_contig5341.12756.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5341.12756.1
Unique NamemRNA_H-paniculata_contig5341.12756.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5341.12756.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5341contigH-paniculata_contig5341:1651..2425 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size329
Cds size327
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930543.3512971-CDS-H-paniculata_contig5341:1650..18071622930543.3512971-CDS-H-paniculata_contig5341:1650..1807Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5341 1651..1807 -
1691481340.9840996-CDS-H-paniculata_contig5341:1650..18071691481340.9840996-CDS-H-paniculata_contig5341:1650..1807Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5341 1651..1807 -
1622930543.370528-CDS-H-paniculata_contig5341:2255..24251622930543.370528-CDS-H-paniculata_contig5341:2255..2425Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5341 2256..2425 -
1691481340.995146-CDS-H-paniculata_contig5341:2255..24251691481340.995146-CDS-H-paniculata_contig5341:2255..2425Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5341 2256..2425 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5341.12756.1prot_H-paniculata_contig5341.12756.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5341 1651..2425 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5341.12756.1

>prot_H-paniculata_contig5341.12756.1 ID=prot_H-paniculata_contig5341.12756.1|Name=mRNA_H-paniculata_contig5341.12756.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=109bp
DYTAACLPGIPGQFVDIDKLGSMFAGVDKLGGGVVGSVVMDSKVTMITMG
ESAATASAEETLVGKATAADGNTRNVMLRSTVDPIAGGLCWSPVDSDLAA
QGEVGTGT*
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mRNA from alignment at H-paniculata_contig5341:1651..2425-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5341.12756.1 ID=mRNA_H-paniculata_contig5341.12756.1|Name=mRNA_H-paniculata_contig5341.12756.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=775bp|location=Sequence derived from alignment at H-paniculata_contig5341:1651..2425- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GATTATACTGCTGCTTGTCTGCCAGGCATTCCTGGACAGTTCGTGGACAT
CGATAAGTTAGGCAGCATGTTCGCTGGCGTAGACAAGCTCGGTGGAGGAG
TGGTGGGTAGTGTGGTGATGGACAGCAAGGTGACCATGATCACAATGGGC
GAGTCTGCTGCAACGGCAAGGTGGGCCAACCCGCGGCGGCTACGTTGCTA
CCTCTCCTTTAACAATCACATGGTGATGCTACGCTGAGCTCTCGATCTCT
CTGAAACGACTACTGCTGCTGTGTTGTCTCTCCAATACAAGCACTGATAA
ATATATCATGGACTACTGACTGTCTGTGTTGTCTTCGGTGTGTGCCATGT
GCTGCCCCTGCAGGAAAGTCATCTCTGTTAACTGTAGTGCATCGAGCTTA
GGGTGACTGCCTGCATCCGTGACTGACTACGTCCAGGCACTCTGCTCTGT
AACATCAGTTGTCCAATTTCATTTTCAAAATCGCGATACTGCAGGCATCA
ACCATGAATCATCGCCACCCTCGCGAAACACGAAATACATCCACTGGCAC
TCGTTTACCTCAATATGATTTTCGCTTGTCGCCATCCCGTCACAATGTAC
TACGAAAATATTGACCAGCGCCGAGGAGACACTGGTAGGAAAGGCCACGG
CGGCCGACGGGAACACACGGAATGTCATGTTGCGATCAACAGTTGATCCA
ATTGCTGGCGGGCTGTGTTGGTCACCAGTTGACAGCGATCTGGCCGCCCA
AGGTGAAGTGGGCACTGGAACATGA
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Coding sequence (CDS) from alignment at H-paniculata_contig5341:1651..2425-

>mRNA_H-paniculata_contig5341.12756.1 ID=mRNA_H-paniculata_contig5341.12756.1|Name=mRNA_H-paniculata_contig5341.12756.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=654bp|location=Sequence derived from alignment at H-paniculata_contig5341:1651..2425- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GATTATACTGCTGCTTGTCTGCCAGGCATTCCTGGACAGTTCGTGGACAT
CGATAAGTTAGGCAGCATGTTCGCTGGCGTAGACAAGCTCGGTGGAGGAG
TGGTGGGTAGTGTGGTGATGGACAGCAAGGTGACCATGATCACAATGGGC
GAGTCTGCTGCAACGGCAAGGATTATACTGCTGCTTGTCTGCCAGGCATT
CCTGGACAGTTCGTGGACATCGATAAGTTAGGCAGCATGTTCGCTGGCGT
AGACAAGCTCGGTGGAGGAGTGGTGGGTAGTGTGGTGATGGACAGCAAGG
TGACCATGATCACAATGGGCGAGTCTGCTGCAACGGCAAGCGCCGAGGAG
ACACTGGTAGGAAAGGCCACGGCGGCCGACGGGAACACACGGAATGTCAT
GTTGCGATCAACAGTTGATCCAATTGCTGGCGGGCTGTGTTGGTCACCAG
TTGACAGCGATCTGGCCGCCCAAGGTGAAGTGGGCACTGGAACATGACGC
CGAGGAGACACTGGTAGGAAAGGCCACGGCGGCCGACGGGAACACACGGA
ATGTCATGTTGCGATCAACAGTTGATCCAATTGCTGGCGGGCTGTGTTGG
TCACCAGTTGACAGCGATCTGGCCGCCCAAGGTGAAGTGGGCACTGGAAC
ATGA
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