mRNA_H-paniculata_contig12.1275.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig12.1275.1
Unique NamemRNA_H-paniculata_contig12.1275.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig12.1275.1 vs. uniprot
Match: D7G6C1_ECTSI (RanBD1 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6C1_ECTSI)

HSP 1 Score: 179 bits (455), Expect = 9.420e-45
Identity = 146/380 (38.42%), Postives = 202/380 (53.16%), Query Frame = 3 
Query:  786 RSVRAPFGEGTTAAKGTRLNKHFATWLSHSVEANSACSLEHGLRDYIAYAAEIRLRVELSTDDTAPQASTAFKHPSMPSAAV-----ASKAAETPLLAVASTASASASPVXXXXXXXXXXXXXXXXEXXAPAPLVPAAAPAPTLPA------------------FSFASPSTLPPVSAPSGKFLFSLPSAPSSTAPVGGIPSGDLLRRFPLNPPASRGVSFKTPAAQTPFRGFQLPSGGAIAPP----APAAEPDEEAMPKEDPSKLQRAQGEELEEILHEVRAKLFRFKKDENTWSDMGIGVLRLMEHKTNNASRLILRNDMGKVLLNVALYAGMNVSATKNTIKFIANVVDVGPSTLMIKVKPDALPPLHKKVLKQLP 1844
            R V   FGEG TA +G RLNK F +W+S+ + A     L+ G+R+Y A AAEIR R   +  +    ++TAF HP   +AAV       K +E  + ++A+ AS S +                      P+   PA+APAP + +                            P    +   L S+  AP +T+P+GG         F  +      V     A    F GF++PSG AI PP    + AA+ +E+ MPKEDPSKL+RA GEE EE++   RAKLFRFK ++ TW DMG+G+LRLM+H TN++ RL+LRNDMGKVLLN A+Y GM+V+  K  IKF ANV D G ++ M+KV  D +  LH +V+  +P
Sbjct:  164 RWVGGAFGEGKTAVQGARLNKRFLSWVSNHL-AEGELFLDSGMREYAACAAEIRDRANHA--EAGAVSTTAFLHPRGSAAAVPPPQTVQKPSEDSI-SMAAEASVSTA---------------------TPSVTAPASAPAPDVKSTXXXXXXXXXXXXXXXXXXXXXXXXXXXPAPGSTPGALTSV--APPATSPLGG---------FKFDGGGLGAVGSSAGA----FNGFKVPSGVAIPPPVAAGSSAADAEEDGMPKEDPSKLERAPGEENEEVVGTFRAKLFRFKMEDKTWGDMGVGMLRLMKHTTNDSRRLVLRNDMGKVLLNAAVYKGMSVTRAKKMIKFAANVGD-GLTSFMVKVTADEVDDLHTRVVGLVP 502
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BLAST of mRNA_H-paniculata_contig12.1275.1 vs. uniprot
Match: A0A836CJC8_9STRA (RanBD1 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJC8_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 2.760e-12
Identity = 54/131 (41.22%), Postives = 76/131 (58.02%), Query Frame = 3 
Query: 1473 EAMPKEDPSKLQRAQGEEL-EEILHEVRAKLFRF--KKDENTWSDMGIGVLRLMEHKTNNASRLILRNDMGKVLLNVALYAGMNVS--ATKNTIKFIANVVDVGP-STLMIKVKPDALPPLHKKVLKQLPS 1847
            E M K  P++L R + EE  EE LHEVRAKLF+   K  E    D+G+GVLRL +H+  +  R+++RND+GKV+LN  +YAGM     A  + +KF A     G  +   ++VK   L  L  K+   +PS
Sbjct:  513 EEMEKLKPAELGRNEDEEAQEETLHEVRAKLFKLDTKDGEKANVDLGVGVLRLTKHRATDLRRMVMRNDIGKVMLNAQVYAGMKFKGDARSSAVKFTAPQESSGELAVYTLRVKKGGLTELMDKLQSMVPS 643
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BLAST of mRNA_H-paniculata_contig12.1275.1 vs. uniprot
Match: A0A067BM64_SAPPC (RanBD1 domain-containing protein (Fragment) n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067BM64_SAPPC)

HSP 1 Score: 77.4 bits (189), Expect = 1.800e-11
Identity = 47/143 (32.87%), Postives = 84/143 (58.74%), Query Frame = 3 
Query: 1413 FQLPSGGAIAPPAPAAEPDE--EAMPKEDPSKLQRAQGEELEEILHEVRA-KLFRFKKDENTWSDMGIGVLRLMEHKTNNASRLILRNDMGKVLLNVALYAGMNVSATKNTIKFIANVVDVG-PSTLMIKVKPDALPPLHKKV 1829
            F LP       PAPAA  DE  E + +E+ + + ++  E  E +L+EV A ++  FK DE  W+D+G    +++++KT  ASR++ RN +GK+++N ALY G+ V+ T N    +  ++  G P+++++ +  D +  L  K+
Sbjct:  188 FNLPKAA----PAPAATEDEDDENIGREEATVIIKSSSEADETVLYEVDAIRIRHFKTDEKRWADIGRHPFKILQNKTTKASRILSRNSIGKIVINAALYKGLEVTVTSNKKSVMLTLLHDGEPTSMLLGIAADRVEELKAKI 326
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BLAST of mRNA_H-paniculata_contig12.1275.1 vs. uniprot
Match: UPI0020071E23 (uncharacterized protein n=1 Tax=Epithele typhae TaxID=378194 RepID=UPI0020071E23)

HSP 1 Score: 79.0 bits (193), Expect = 2.530e-11
Identity = 37/84 (44.05%), Postives = 57/84 (67.86%), Query Frame = 3 
Query: 1515 QGEELEEILHEVRAKLFRFKKDEN---TWSDMGIGVLRLMEHKTNNASRLILRND-MGKVLLNVALYAGMNVSATKNTIKFIAN 1754
            +GE+ EE +HE++ K+FR   D++   TWSD+G+GVLRL   K  +A R++LRN   GK+ +N  +Y+GMN S  KN + F+ +
Sbjct:  529 EGEQGEETVHEIKTKVFRMSADKDGNPTWSDLGVGVLRLKRDKETDARRMLLRNSGTGKITINFRIYSGMNASVAKNVVSFMGH 612
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BLAST of mRNA_H-paniculata_contig12.1275.1 vs. uniprot
Match: A0A662X9V3_9STRA (RanBD1 domain-containing protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X9V3_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 9.260e-11
Identity = 53/180 (29.44%), Postives = 91/180 (50.56%), Query Frame = 3 
Query: 1278 PSAPSSTAPVGGIPSGDLLRRFP---LNPPASRGVSFKTPAAQTPFRGFQLPSGGAIAPPAPAAEPDEEAMPKEDPSKLQRAQGEELEEILHEVRAKLFRFKKDENTWSDMGIGVLRLMEHKTNNASRLILRNDMGKVLLNVALYAGMNV-----SATKNTIKFIANVVDVGPSTLMIKV 1793
            PSA ++ +P GG   G+L    P     PPA  G+   +  A  P     +PS  A      A + DEE + +E+ + + +A   + E      +AK+F FK DE  W+D G+  L+++ +K   ++R+++RN++GK++LN +LY G+ V        K  +     V D   +  ++KV
Sbjct:  410 PSA-AAASPSGGFSFGNLTAPKPSTMATPPAFSGLKPFSFGASAPAASTAVPSSAA------AQDEDEETVGREEATVILKADAPDDECTFEAEKAKVFEFKNDEKRWADKGVHPLKVLVNKETKSARILVRNEIGKIVLNSSLYKGLTVRPHEVKGKKTGVTLALQVEDGSMAQFLLKV 582
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BLAST of mRNA_H-paniculata_contig12.1275.1 vs. uniprot
Match: A0A507FGI1_9FUNG (Uncharacterized protein n=1 Tax=Chytriomyces confervae TaxID=246404 RepID=A0A507FGI1_9FUNG)

HSP 1 Score: 72.4 bits (176), Expect = 3.360e-9
Identity = 49/120 (40.83%), Postives = 70/120 (58.33%), Query Frame = 3 
Query: 1461 EPDEEAMPKE---DPSKLQRAQGEELEEILHEVRAKLFRFKKDENTWSDMGIGVLRLMEHKTNNASRLILRND-MGKVLLNVALYAGMNVSATKNTIKFIANVVDVGP----STLMIKVK 1796
            E D+E  PK+   D + L R  GEE E  +HEVR K +  +K +  W D+G+G+L+L  H+    SRLILR D  G+VLLN+A++ GMN+ A  N+       + VG     S  +I+VK
Sbjct:  758 EDDDEDAPKDEQIDSAILMRGAGEEGERTVHEVRCKAYVLRKAK--WDDVGLGLLKLNTHRDTGKSRLILRADGSGRVLLNLAVFEGMNMKAEPNSGGKAVGFMGVGDGGALSKYLIRVK 875
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BLAST of mRNA_H-paniculata_contig12.1275.1 vs. uniprot
Match: A0A329S328_9STRA (RanBD1 domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329S328_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 3.530e-9
Identity = 44/146 (30.14%), Postives = 74/146 (50.68%), Query Frame = 3 
Query: 1281 SAPSSTAPVGGIPSGDLLRRFPLNPPASRGVSFKTPAAQTPFRGFQLPSGGAIAPPAPAAEPDEEAMPKEDPSKLQRAQGEELEEILHEVRAKLFRFKKDENTWSDMGIGVLRLMEHKTNNASRLILRNDMGKVLLNVALYAGMNV 1718
            S  SST   GG   G+L       P    G SF +             S      PA   + +EE + +E+ + + +A   + +      +AK+F FKKDE  W+D G+  L+++  K   ++R+++RN++GK++LN ALY GM++
Sbjct:  314 STTSSTPATGGFSFGNLSAPKSTTPAPXXGFSFGS-------------SAXXXXXPAATGDDEEENIGREEATVIIKADSPDDDCTFEAEKAKIFEFKKDEKRWADKGVHPLKVLVSKETKSARILVRNEIGKIVLNSALYKGMSI 446
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BLAST of mRNA_H-paniculata_contig12.1275.1 vs. uniprot
Match: W2KID0_PHYPR (RanBD1 domain-containing protein n=8 Tax=Phytophthora TaxID=4783 RepID=W2KID0_PHYPR)

HSP 1 Score: 71.2 bits (173), Expect = 4.530e-9
Identity = 46/146 (31.51%), Postives = 77/146 (52.74%), Query Frame = 3 
Query: 1281 SAPSSTAPVGGIPSGDLLRRFPLNPPASRGVSFKTPAAQTPFRGFQLPSGGAIAPPAPAAEPDEEAMPKEDPSKLQRAQGEELEEILHEVRAKLFRFKKDENTWSDMGIGVLRLMEHKTNNASRLILRNDMGKVLLNVALYAGMNV 1718
            SA SST   GG   G+L       P  + G SF          G   P+  + +    AA  DEE + +E+ + + +A   + +      +AK+F FKKDE  W+D G+  L+++  +   ++R+++RN++GK++LN ALY GM +
Sbjct:  303 SATSSTPATGGFSFGNLTAPKSAAPAPTGGFSF----------GASAPAATSAS--TAAAVEDEENIGREEATVIIKADSPDDDCTFEADKAKIFEFKKDEKRWADKGVHPLKVLVSQETKSARILVRNEIGKIVLNSALYKGMAI 436
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BLAST of mRNA_H-paniculata_contig12.1275.1 vs. uniprot
Match: S3CQF7_GLAL2 (PH n=1 Tax=Glarea lozoyensis (strain ATCC 20868 / MF5171) TaxID=1116229 RepID=S3CQF7_GLAL2)

HSP 1 Score: 72.0 bits (175), Expect = 5.480e-9
Identity = 43/114 (37.72%), Postives = 72/114 (63.16%), Query Frame = 3 
Query: 1458 AEPDEEAMPKEDPSKLQRAQGEELEEILHEVRAKLFRFKKDENTWSDMGIGVLRLMEHKTNNASRLILRNDMGKVLLNVALYAGMNVSATKNTIKFIANVVD-VGPSTLMIKVK 1796
            A+PD E   + D S  ++A GEE E+ L E+RAK  ++  D N WS  G G+LR+++H   N +R+++R D+G ++LN +L +G++  AT+ T+K +    D  G  T +++VK
Sbjct: 1617 ADPDAEKHAQLDLS--EQAPGEEDEKRLFEIRAKASKY--DNNAWSTKGTGLLRVLKHNDTNNTRILIRTDIGNIVLNKSLLSGVDYVATQKTVKLMTASEDGKGLETWILQVK 1726
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BLAST of mRNA_H-paniculata_contig12.1275.1 vs. uniprot
Match: K3WSW0_GLOUD (RanBD1 domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WSW0_GLOUD)

HSP 1 Score: 65.1 bits (157), Expect = 5.680e-9
Identity = 31/90 (34.44%), Postives = 57/90 (63.33%), Query Frame = 3 
Query: 1536 ILHEVRAKLFRFKKDENTWSDMGIGVLRLMEHKTNNASRLILRNDMGKVLLNVALYAGMNVSAT----KNTIKFIANVVDVGPSTLMIKV 1793
            +    +AK+F FKKDE  W+D G+  L+++ +K +  +R+++RN++GK++LN +LY GM++ A     K T   ++  VD   +  ++KV
Sbjct:    9 VFDAEKAKVFEFKKDEKRWADKGLHPLKVLVNKDSKKARILVRNEIGKIVLNSSLYKGMSIKAHETKGKKTGVIVSLQVDGAMTQYLLKV 98
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12.1275.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G6C1_ECTSI9.420e-4538.42RanBD1 domain-containing protein n=2 Tax=Ectocarpu... [more]
A0A836CJC8_9STRA2.760e-1241.22RanBD1 domain-containing protein n=1 Tax=Tribonema... [more]
A0A067BM64_SAPPC1.800e-1132.87RanBD1 domain-containing protein (Fragment) n=1 Ta... [more]
UPI0020071E232.530e-1144.05uncharacterized protein n=1 Tax=Epithele typhae Ta... [more]
A0A662X9V3_9STRA9.260e-1129.44RanBD1 domain-containing protein n=1 Tax=Nothophyt... [more]
A0A507FGI1_9FUNG3.360e-940.83Uncharacterized protein n=1 Tax=Chytriomyces confe... [more]
A0A329S328_9STRA3.530e-930.14RanBD1 domain-containing protein n=2 Tax=Phytophth... [more]
W2KID0_PHYPR4.530e-931.51RanBD1 domain-containing protein n=8 Tax=Phytophth... [more]
S3CQF7_GLAL25.480e-937.72PH n=1 Tax=Glarea lozoyensis (strain ATCC 20868 / ... [more]
K3WSW0_GLOUD5.680e-934.44RanBD1 domain-containing protein n=1 Tax=Globispor... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig12contigH-paniculata_contig12:42471..46749 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score186.4
Seed ortholog evalue2.5e-44
Seed eggNOG ortholog2880.D7G6C1
KEGG koko:K18722,ko:K20282
KEGG TC1.I.1
Hectar predicted targeting categoryother localisation
GOsGO:0000082,GO:0000226,GO:0000278,GO:0000972,GO:0000973,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005643,GO:0005737,GO:0005739,GO:0006325,GO:0006342,GO:0006344,GO:0006348,GO:0006355,GO:0006403,GO:0006405,GO:0006406,GO:0006508,GO:0006511,GO:0006606,GO:0006607,GO:0006611,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006950,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007051,GO:0008104,GO:0008150,GO:0008152,GO:0008536,GO:0009056,GO:0009057,GO:0009266,GO:0009408,GO:0009628,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0012505,GO:0015031,GO:0015833,GO:0015931,GO:0016020,GO:0016021,GO:0016043,GO:0016458,GO:0016973,GO:0017016,GO:0017038,GO:0019219,GO:0019222,GO:0019538,GO:0019899,GO:0019941,GO:0022402,GO:0030163,GO:0030466,GO:0031224,GO:0031267,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031503,GO:0031967,GO:0031975,GO:0031990,GO:0032991,GO:0033036,GO:0033365,GO:0033554,GO:0034504,GO:0034605,GO:0034613,GO:0035392,GO:0036228,GO:0040029,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044614,GO:0044615,GO:0044770,GO:0044772,GO:0044843,GO:0045184,GO:0045814,GO:0045892,GO:0045934,GO:0046907,GO:0048519,GO:0048523,GO:0050657,GO:0050658,GO:0050789,GO:0050794,GO:0050896,GO:0051020,GO:0051028,GO:0051168,GO:0051169,GO:0051170,GO:0051171,GO:0051172,GO:0051179,GO:0051234,GO:0051236,GO:0051252,GO:0051253,GO:0051276,GO:0051603,GO:0051641,GO:0051649,GO:0051716,GO:0060255,GO:0065007,GO:0070727,GO:0071166,GO:0071426,GO:0071427,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072594,GO:0072657,GO:0080090,GO:0090435,GO:1901564,GO:1901565,GO:1901575,GO:1902679,GO:1903047,GO:1903506,GO:1903507,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.Ran GTPase binding
EggNOG OGsCOG5171@1,KOG0864@2759
Ec32 ortholog descriptionRan binding domain
Ec32 orthologEc-10_001300.1
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03019,ko04131
Exons6
Model size2767
Cds size1155
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig12.1275.1prot_H-paniculata_contig12.1275.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig12 43522..45835 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928915.5887747-UTR-H-paniculata_contig12:42470..426071622928915.5887747-UTR-H-paniculata_contig12:42470..42607Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12 42471..42607 +
1691480666.2270327-UTR-H-paniculata_contig12:42470..426071691480666.2270327-UTR-H-paniculata_contig12:42470..42607Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12 42471..42607 +
1622928915.6002834-UTR-H-paniculata_contig12:42896..431741622928915.6002834-UTR-H-paniculata_contig12:42896..43174Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12 42897..43174 +
1691480666.2398987-UTR-H-paniculata_contig12:42896..431741691480666.2398987-UTR-H-paniculata_contig12:42896..43174Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12 42897..43174 +
1622928915.6160545-UTR-H-paniculata_contig12:43238..435211622928915.6160545-UTR-H-paniculata_contig12:43238..43521Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12 43239..43521 +
1691480666.2499218-UTR-H-paniculata_contig12:43238..435211691480666.2499218-UTR-H-paniculata_contig12:43238..43521Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12 43239..43521 +
1622928915.7081854-UTR-H-paniculata_contig12:45835..467491622928915.7081854-UTR-H-paniculata_contig12:45835..46749Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12 45836..46749 +
1691480666.300923-UTR-H-paniculata_contig12:45835..467491691480666.300923-UTR-H-paniculata_contig12:45835..46749Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12 45836..46749 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928915.63221-CDS-H-paniculata_contig12:43521..442331622928915.63221-CDS-H-paniculata_contig12:43521..44233Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12 43522..44233 +
1691480666.2653496-CDS-H-paniculata_contig12:43521..442331691480666.2653496-CDS-H-paniculata_contig12:43521..44233Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12 43522..44233 +
1622928915.6485393-CDS-H-paniculata_contig12:44456..445811622928915.6485393-CDS-H-paniculata_contig12:44456..44581Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12 44457..44581 +
1691480666.2734406-CDS-H-paniculata_contig12:44456..445811691480666.2734406-CDS-H-paniculata_contig12:44456..44581Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12 44457..44581 +
1622928915.6661797-CDS-H-paniculata_contig12:45260..454041622928915.6661797-CDS-H-paniculata_contig12:45260..45404Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12 45261..45404 +
1691480666.2810378-CDS-H-paniculata_contig12:45260..454041691480666.2810378-CDS-H-paniculata_contig12:45260..45404Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12 45261..45404 +
1622928915.688767-CDS-H-paniculata_contig12:45661..458351622928915.688767-CDS-H-paniculata_contig12:45661..45835Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12 45662..45835 +
1691480666.2926397-CDS-H-paniculata_contig12:45661..458351691480666.2926397-CDS-H-paniculata_contig12:45661..45835Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12 45662..45835 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig12.1275.1

>prot_H-paniculata_contig12.1275.1 ID=prot_H-paniculata_contig12.1275.1|Name=mRNA_H-paniculata_contig12.1275.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=385bp
MSNAVVKAPNGLHMESGETAFAVATKVVTRSVRAPFGEGTTAAKGTRLNK
HFATWLSHSVEANSACSLEHGLRDYIAYAAEIRLRVELSTDDTAPQASTA
FKHPSMPSAAVASKAAETPLLAVASTASASASPVSATPAPSPPLAAPPAL
ETPAPAPLVPAAAPAPTLPAFSFASPSTLPPVSAPSGKFLFSLPSAPSST
APVGGIPSGDLLRRFPLNPPASRGVSFKTPAAQTPFRGFQLPSGGAIAPP
APAAEPDEEAMPKEDPSKLQRAQGEELEEILHEVRAKLFRFKKDENTWSD
MGIGVLRLMEHKTNNASRLILRNDMGKVLLNVALYAGMNVSATKNTIKFI
ANVVDVGPSTLMIKVKPDALPPLHKKVLKQLPSQ*
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mRNA from alignment at H-paniculata_contig12:42471..46749+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig12.1275.1 ID=mRNA_H-paniculata_contig12.1275.1|Name=mRNA_H-paniculata_contig12.1275.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4279bp|location=Sequence derived from alignment at H-paniculata_contig12:42471..46749+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCCAATCCAAAGCCGGGGTGGGTCCAACCCCCTGTACTTGATATGCCAAA
GAGAGTACATAACGATGATGAGGGGTCTAGAGACCCCCCCGATGTCATTC
AAGGAAGACGGCGGGCAACAGTCAATCCAAAATTTAGGTGAGAAAATCGC
GCAGTCTTCGACAATTGGGGTTGCTGTACAAGCATGACTCTTTGAGACGT
TACCGTCTGTGTACCGTCCGTATCGACTGCTGAACGGACTGTCCCGTACT
GTACAAAAGTGACTAGCATTCAAAATTTGCCGTTCGATTATACTCGTATT
GCTCCTCCCAACCCGCAACCGAATATTTCCTCTAACCAGCCCAGCCCGTG
TTACAGATATATCTGACGAATTTGCCTGATTGCAATCAATTACTGTACTG
ATCCTCAACTCTCGCTTCCATCTTAGGGCAAAGAAACTGTTGTCAGGCGC
GGAGGGGACTTCCACACCCTCCGCTTTCGCTGGAATTACAGTCCCACCTG
CGCAATCAGGGTTCGTGTTCGGCACAGGAGCTGCTGGCGCCAATGCCTCG
AGTACGCCGTTTGGCGGCGCAAAGATCAATTTTGGAAAGTCCTTGACTGA
AACCACGGCACCTGCGCCGGTGGGAGCTTGTCCTCCTTTTAGCTTTGGTG
CCCCTTCAACTCAAACCAGAGCAGCTGCACCGGTCGGAAGCACTCCTGCT
TTTAGCTTTGGTGCGCCTTCGACTGGAACCACAGCAGCTGCACCGGTCGT
AAGCACTCCGGCTTTTAGCTTTGGTGCGCCTTCGACTGGAACCACAGCAG
CTGCACCGGTCGTAAGCACTCCGGCTTTTAGTTTTGGCGCACCTTCGACC
GGAAATGCAGCAGCTATACCGACAGGAGGATATCTGACTGCGGCTAGGGA
GGGGTTTTCCTTTCCTAAGGTACCCTTAGGAATCAACGCATCATCGACCG
TCCCTGCCAGCAACTCCCCGCCCGCAAAGTCGCCCGGAATCCTGCCGACA
GCGACTGTGGCGAGCCCCCAGCCTAGTAAGCCTCAGTCAGATGTTGTCTC
CATGAGCAACGCGGTCGTCAAGGCACCGAATGGCTTGCACATGGAATCTG
GAGAAACAGCATTTGCTGTCGCTACCAAGGTTGTTACTCGGTCGGTAAGA
GCCCCATTTGGCGAGGGTACTACAGCTGCAAAGGGCACTCGCTTGAACAA
GCACTTTGCAACCTGGCTGTCACACAGCGTGGAAGCCAACTCCGCGTGTA
GTCTGGAACATGGCCTACGCGACTACATCGCCTATGCGGCAGAAATTCGG
TTGCGCGTCGAGCTGTCCACAGACGACACAGCGCCACAAGCCTCCACAGC
CTTCAAGCACCCGTCGATGCCGTCTGCTGCCGTTGCGTCTAAGGCGGCGG
AGACACCTCTATTGGCAGTAGCTTCTACCGCTTCAGCAAGTGCTAGCCCT
GTCTCGGCCACCCCAGCCCCGTCCCCGCCGCTTGCAGCGCCCCCAGCTCT
GGAAACACCGGCACCGGCACCGTTGGTGCCAGCTGCAGCACCAGCGCCAA
CACTCCCTGCGTTCTCTTTTGCCTCGCCGTCGACGCTGCCCCCCGTTTCG
GCACCGTCAGGCAAATTTCTCTTCAGTTTGCCTTCAGCACCATCGTCGAC
GGCACCGGTGGGCGGTATTCCTTCTGGGGACTTATTACGACGATTCCCTT
TAAACCCGCCAGCTTCCAGAGGCGTAAGCTTCAAAACTCCTGCTGCACAA
ACACCTTTCAGAGGTGAGAGTTTTATTTTGCTGTTTCCTTTTGAATCCTA
CGTCGAATGCGATGACCGCGCATGTTGCCGACATGTCCACAGTGAATCGA
GTGACATATCGGGCAGTACAGTACATCCAGCGATTCCCGCGTATGGGATC
CACGATGTTGCGGTGTAATGAAATGTCAAGCTGTTCGCTTGGCAAGCAAG
CGCAAAGAACATCGCTGCTGCGACTCCTCTTCTCAGGATTTCAACTCCCC
AGCGGAGGAGCGATAGCACCACCAGCGCCAGCAGCTGAGCCAGACGAAGA
AGCTATGCCCAAGGAGGACCCGTCGAAACTTCAACGAGCGCAGGGGGAAG
AACTTGAAGAGGTACCACTTTCATTTGTCCCATGTAGTAGTACTGATACT
GAAGCTATCGCGTCAATTGCTCCTTTGACACTTTTCTTACGTTCGTGTTT
GCGGTTAGTCAGACCCTGCATTGCCACATATTATGTGCAGCATGATCCCT
GACACGCCTGATCGCTGACCTGCCTCTAAGCTCTCAAACTACGATGAAAA
TTAGGCTACGATGAAAGTTGAAAGTACCAAAAACGTATGATGATCCTCAG
AGTCGAGGTTTCTGGCTGCACACGCGTCATTGCAGACCACTTGTAACATT
TTGTGTAACGGTAATGCAGGTTTGAGCGATTCAGGCCAGACCCGCATCAT
TAATTCAAATGACCTGAATACGGCAGAAATGGCTGTCTAATTTTTCGTGT
CAGACATCTCTCGCCGTTGTGCTGATGTGATCGGCTTGGTAGTAGCTCCG
ATTGTGACCCCTCCACTCCGCCGAAGCCCTTGTTGGCATATCTAGGCGAA
CTTTGCCCTCGTGGCTCCTCCAGTGACTACGCCCGTATCCTGTACGCGCA
AAGGTATATTTGTGCCAATTGTATACGAGTCAATATTATAACGTGCAGCA
AGTGTGCTGCACACGCGTCGCAGCATCTATAGTAAGGTCATTCACACCGT
TGAACCGTCCCCACATTCCTCCCTCTGCAATCGCTCACAGATTCTTCACG
AAGTCAGGGCAAAACTGTTCAGATTCAAGAAAGACGAGAATACCTGGAGT
GATATGGGAATAGGAGTCCTGAGACTGATGGAACATAAAACCAATAATGC
GAGCCGCCTTATTCTACGCAATGACATGGGCAAGGTGGGTCGTTTTGTTG
CGTTTAGGAAGGAGACGGTTTTCAGTCAAAAGATACGCTGTTTAGAATGC
CATATTATTATGTGCCGTAAGTGATGTAAAATCGACGCAAGTACGACTAA
CACGCAGCACCGATTATTTGGAATCGCCCTTAAATGCACCTCGTGATTGA
AACAAACAGGTTGCTCAGGATATTTGCGTGTGAACTAGTTCCATGCATGA
AGTGTAATCGCAGCAATTGATATGCAACGTTTGTTTTTCAGGTGCTGCTG
AACGTGGCGTTGTACGCGGGTATGAACGTTTCCGCGACGAAGAACACCAT
CAAGTTCATTGCTAACGTCGTGGATGTGGGCCCTTCTACTCTGATGATCA
AGGTCAAGCCCGACGCTCTTCCTCCTCTTCACAAGAAGGTGCTGAAACAG
CTGCCGTCTCAATAGGTCTCTCCGCACTCAACTACAGGCTGCAATATGGA
GGTACACTGACACCGACATGACAGCTGGCCGTGGAAGGGATCATGAATTG
CGCCGGCACAGAAGCGAATCACGGCCGTAGATACGTGATAGCCGTTGGTT
TCGATAGTTGCGAATTTTTTGGGTGCCGCACAGCAGGGGCTGTAGCTTGT
TATACGTCTAGGGGGGACTGTGTGTGGCAGAGAAAAAGCCAAGCATCGGT
GTGGTTGAAGATGAAAAATTTTACAGGATACAGTCATAATTTTTGATTCA
CTACTCACTCGCGGAACGTCGAAAATGAGAGTACATTTCTTGGTTTGGAG
GTTAGCTCTGCAAACTGTTTGGGTAATAATATAAGTCATGAGGTCTAAGG
CAGTCCAATTCTATTTCATCACTTCGACGGACGCGCAGTTATCCTGTGAT
GCACCATGACAATAGCCCTGAGAGAGCCATTTTTTTTTACAGAACTATAG
TAATCGAAACGACGCGGAGACGGGGTGAAGTGAAGTGAAGCCCCCGATGA
CAAAAATCGAGACGACATTTCCTTCACATCCATAGTTCACTCAACGGGAC
ATCTTGCAGAGAGAAAAGGTAAATGTTACGTCATCCGAGGCAAGTAGTTG
CCCCGAGATCCGAGGATGACATGGCCATAAATGACGTCATTCGTCAATAT
GTTTTTTTTTTGCCATTCAGAAGGCTCTTTTCATCAAATTTGACCAATAA
AAAAGCTGAAGGCCCCTTTTCCCTGTTTTTTAATGCTCTATCGATTAGAG
AGTGTACGCGTGCATCTTGTTGCGGACGTAGGTCGAGCTTCCGCTACTTT
AGCAGTAAATGTACATCCACCACTTACCATCAGGAACATGATCCGTCGAC
GTTTAACCACGTTTACCGAAAATGACGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig12:42471..46749+

>mRNA_H-paniculata_contig12.1275.1 ID=mRNA_H-paniculata_contig12.1275.1|Name=mRNA_H-paniculata_contig12.1275.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2310bp|location=Sequence derived from alignment at H-paniculata_contig12:42471..46749+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGCAACGCGGTCGTCAAGGCACCGAATGGCTTGCACATGGAATCTGG
AGAAACAGCATTTGCTGTCGCTACCAAGGTTGTTACTCGGTCGGTAAGAG
CCCCATTTGGCGAGGGTACTACAGCTGCAAAGGGCACTCGCTTGAACAAG
CACTTTGCAACCTGGCTGTCACACAGCGTGGAAGCCAACTCCGCGTGTAG
TCTGGAACATGGCCTACGCGACTACATCGCCTATGCGGCAGAAATTCGGT
TGCGCGTCGAGCTGTCCACAGACGACACAGCGCCACAAGCCTCCACAGCC
TTCAAGCACCCGTCGATGCCGTCTGCTGCCGTTGCGTCTAAGGCGGCGGA
GACACCTCTATTGGCAGTAGCTTCTACCGCTTCAGCAAGTGCTAGCCCTG
TCTCGGCCACCCCAGCCCCGTCCCCGCCGCTTGCAGCGCCCCCAGCTCTG
GAAACACCGGCACCGGCACCGTTGGTGCCAGCTGCAGCACCAGCGCCAAC
ACTCCCTGCGTTCTCTTTTGCCTCGCCGTCGACGCTGCCCCCCGTTTCGG
CACCGTCAGGCAAATTTCTCTTCAGTTTGCCTTCAGCACCATCGTCGACG
GCACCGGTGGGCGGTATTCCTTCTGGGGACTTATTACGACGATTCCCTTT
AAACCCGCCAGCTTCCAGAGGCGTAAGCTTCAAAACTCCTGCTGCACAAA
CACCTTTCAGAGATGAGCAACGCGGTCGTCAAGGCACCGAATGGCTTGCA
CATGGAATCTGGAGAAACAGCATTTGCTGTCGCTACCAAGGTTGTTACTC
GGTCGGTAAGAGCCCCATTTGGCGAGGGTACTACAGCTGCAAAGGGCACT
CGCTTGAACAAGCACTTTGCAACCTGGCTGTCACACAGCGTGGAAGCCAA
CTCCGCGTGTAGTCTGGAACATGGCCTACGCGACTACATCGCCTATGCGG
CAGAAATTCGGTTGCGCGTCGAGCTGTCCACAGACGACACAGCGCCACAA
GCCTCCACAGCCTTCAAGCACCCGTCGATGCCGTCTGCTGCCGTTGCGTC
TAAGGCGGCGGAGACACCTCTATTGGCAGTAGCTTCTACCGCTTCAGCAA
GTGCTAGCCCTGTCTCGGCCACCCCAGCCCCGTCCCCGCCGCTTGCAGCG
CCCCCAGCTCTGGAAACACCGGCACCGGCACCGTTGGTGCCAGCTGCAGC
ACCAGCGCCAACACTCCCTGCGTTCTCTTTTGCCTCGCCGTCGACGCTGC
CCCCCGTTTCGGCACCGTCAGGCAAATTTCTCTTCAGTTTGCCTTCAGCA
CCATCGTCGACGGCACCGGTGGGCGGTATTCCTTCTGGGGACTTATTACG
ACGATTCCCTTTAAACCCGCCAGCTTCCAGAGGCGTAAGCTTCAAAACTC
CTGCTGCACAAACACCTTTCAGAGGATTTCAACTCCCCAGCGGAGGAGCG
ATAGCACCACCAGCGCCAGCAGCTGAGCCAGACGAAGAAGCTATGCCCAA
GGAGGACCCGTCGAAACTTCAACGAGCGCAGGGGGAAGAACTTGAAGAGG
ATTTCAACTCCCCAGCGGAGGAGCGATAGCACCACCAGCGCCAGCAGCTG
AGCCAGACGAAGAAGCTATGCCCAAGGAGGACCCGTCGAAACTTCAACGA
GCGCAGGGGGAAGAACTTGAAGAGATTCTTCACGAAGTCAGGGCAAAACT
GTTCAGATTCAAGAAAGACGAGAATACCTGGAGTGATATGGGAATAGGAG
TCCTGAGACTGATGGAACATAAAACCAATAATGCGAGCCGCCTTATTCTA
CGCAATGACATGGGCAAGATTCTTCACGAAGTCAGGGCAAAACTGTTCAG
ATTCAAGAAAGACGAGAATACCTGGAGTGATATGGGAATAGGAGTCCTGA
GACTGATGGAACATAAAACCAATAATGCGAGCCGCCTTATTCTACGCAAT
GACATGGGCAAGGTGCTGCTGAACGTGGCGTTGTACGCGGGTATGAACGT
TTCCGCGACGAAGAACACCATCAAGTTCATTGCTAACGTCGTGGATGTGG
GCCCTTCTACTCTGATGATCAAGGTCAAGCCCGACGCTCTTCCTCCTCTT
CACAAGAAGGTGCTGAAACAGCTGCCGTCTCAATAGGTGCTGCTGAACGT
GGCGTTGTACGCGGGTATGAACGTTTCCGCGACGAAGAACACCATCAAGT
TCATTGCTAACGTCGTGGATGTGGGCCCTTCTACTCTGATGATCAAGGTC
AAGCCCGACGCTCTTCCTCCTCTTCACAAGAAGGTGCTGAAACAGCTGCC
GTCTCAATAG
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