mRNA_H-paniculata_contig5340.12754.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5340.12754.1
Unique NamemRNA_H-paniculata_contig5340.12754.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig5340.12754.1 vs. uniprot
Match: D7FLL3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLL3_ECTSI)

HSP 1 Score: 59.3 bits (142), Expect = 1.810e-7
Identity = 35/87 (40.23%), Postives = 49/87 (56.32%), Query Frame = 1 
Query:  190 AATMVCAVVAFNTSFKKYRWGKLIWRRPRPRPQKRVSFSESCTVIHHLPEREDLTDDDRRALCWSPAELREFARSTLIDEWIECWGA 450
            AA   C  +AFN       +G      PR R  KRVSFS    +IH       LT+++R+ L +SPAEL++F+RS  +D W+E WG+
Sbjct:    9 AALTACTAIAFN-------FGVFF---PRRRAGKRVSFSTREDMIHD-GYGHHLTEEERKDLSYSPAELQQFSRSLDVDAWLEEWGS 84
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5340.12754.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FLL3_ECTSI1.810e-740.23Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5340contigH-paniculata_contig5340:3750..7326 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-17_000710.1
Exons2
Model size2012
Cds size453
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5340.12754.1prot_H-paniculata_contig5340.12754.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5340 6874..7326 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930543.2546432-UTR-H-paniculata_contig5340:3749..51541622930543.2546432-UTR-H-paniculata_contig5340:3749..5154Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5340 3750..5154 -
1691481340.9545248-UTR-H-paniculata_contig5340:3749..51541691481340.9545248-UTR-H-paniculata_contig5340:3749..5154Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5340 3750..5154 -
1622930543.2857268-UTR-H-paniculata_contig5340:6721..68731622930543.2857268-UTR-H-paniculata_contig5340:6721..6873Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5340 6722..6873 -
1691481340.964411-UTR-H-paniculata_contig5340:6721..68731691481340.964411-UTR-H-paniculata_contig5340:6721..6873Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5340 6722..6873 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930543.304752-CDS-H-paniculata_contig5340:6873..73261622930543.304752-CDS-H-paniculata_contig5340:6873..7326Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5340 6874..7326 -
1691481340.9739046-CDS-H-paniculata_contig5340:6873..73261691481340.9739046-CDS-H-paniculata_contig5340:6873..7326Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5340 6874..7326 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5340.12754.1

>prot_H-paniculata_contig5340.12754.1 ID=prot_H-paniculata_contig5340.12754.1|Name=mRNA_H-paniculata_contig5340.12754.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=151bp
IWCVACCVLLCVSHSLFPSSCCLRSQRAWDKPTATHEGGGVLSKSSGLSN
TSRGCKDMREAALAATMVCAVVAFNTSFKKYRWGKLIWRRPRPRPQKRVS
FSESCTVIHHLPEREDLTDDDRRALCWSPAELREFARSTLIDEWIECWGA
*
back to top

mRNA from alignment at H-paniculata_contig5340:3750..7326-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5340.12754.1 ID=mRNA_H-paniculata_contig5340.12754.1|Name=mRNA_H-paniculata_contig5340.12754.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3577bp|location=Sequence derived from alignment at H-paniculata_contig5340:3750..7326- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATCTGGTGCGTGGCGTGTTGTGTGCTGTTGTGTGTTTCTCATTCTCTGTT
TCCGTCTTCCTGCTGCTTACGGAGCCAACGGGCTTGGGACAAACCCACCG
CTACCCACGAGGGGGGCGGAGTTCTTTCCAAGTCTTCTGGGCTTTCCAAT
ACCTCTCGTGGGTGTAAGGATATGAGGGAAGCGGCGTTGGCGGCGACGAT
GGTGTGTGCAGTTGTCGCCTTCAACACCAGCTTCAAGAAGTACAGATGGG
GCAAACTGATATGGAGGCGACCAAGGCCACGTCCCCAAAAGCGAGTCTCC
TTCTCCGAGTCTTGCACGGTGATCCATCACCTGCCAGAGCGAGAGGACCT
CACAGATGACGACAGAAGGGCGCTGTGCTGGTCACCTGCGGAGCTACGAG
AGTTCGCGCGATCAACGCTCATCGACGAATGGATTGAGTGCTGGGGGGCG
TGAGGGCAGGAGAAACTTCATACCGACCGAATTTTCAATTCTACGTCTGT
TCATGAAACACGAGCAACCCAAAAACCGAGACGCAATTGAGACTGAACAC
TTGCGAGGTTGGAGACATCGGAGGGGTGGGCATCAATTGGAAGGTGAACC
TACTGGTAAGCTATTGCTGTTTGGAGATGGTATGGCGTGGCACTGGGTGG
AGCTGCGCTTATGGTTCGTCGACGGTGAACCTGCTCAACAGCGCTGCGGC
TTGTCTGAAGTGGTGTAGTTTGTTGCTGTTGTCCGTGACCATTTTTGGGT
TCGCTTTTTGTCGTCGACTGCCAGCCAAGCAAGACACGTGGTGTCTGCTC
GGGGTAAATTGAACTATTTTTAGTCTAGTCAAGGGTAGGTGGTGGCACGT
GCGTCATTTTGTGCCAAAGGGCTGACTAGACGAGCCCATGCAACAAATGT
TCTATGTCCGGCTCTGTTTGTGAGTATCAATGGGATTGACGCAGGAAGAT
CAGCCCTTTAGACCGCGATTCTTCGAGAGCCTTTGTTGCGTGCGTTGGTG
ACAAAACAAACGTACGCTCTCTTTGCTGGATGTTGTTCAAAATTCAAGCA
GCGACCCGAAAAGGATTTTGATTGTTGTTTCTGGTGCGCAATTTGGCGGT
TGCACATTTTTGAGTGGCAAATTTCAGATTTTCACCTGCGATATCCCCAG
TCCACGCGATTTTTATCATGTTTCTTTTTTCTATCTCTCTCTCGATCTCC
CTCTCTCTTTGGGTATGTTTCGTCATTGTTGTACTGTGTGTATGTTGGCG
TCTTCGCCTCATAGATGTGCTGTGTGTGCCTTGCGTTTGGCTGTATTTGT
GTTGTGCGTCATGGGAGCCAGTAAAACCTCCGTCTGATTTCTTTTTTTTG
CATGTTCTCCGTCCTCACTCAAATTTTGGTTTTGCTGCCGACAACGACTG
TTTTCAACTGTCAGCTTTTCGTCCAAAGCTCATGTTGTCCATGGTTTAGT
GTCATCGTGGTGTTTTTGTGTGGTCGGGCGGTTGAGCTGACCAGTTTTGT
ATTTTTTCGTTTTCAAAGTTGTATGCCTTGTCCCTCCCTGGTTGCCTGCT
GAATAGAAAAATATCATTTTTGATTCAACAGAAGATAGATGAGTCAATTA
CGCGTCCTCGACTTGCCTCGCTAAATAGGTGGAAGAAAATATTTTTATTG
CCTTCTATGAACAAGCTGATGACTGCTTTCTTACATCTCAGTCTTCCATA
CAGTTGGGTTTTTTTTTTATATATATATCGAGCTTTGACAGCCCGGTACT
ACGTCAGTACACTGACGTTAACCTAGTTTTTTTTTTTTTTTGGCAGCGGC
ACACAGAGGCCGAAGGGGTTCTGATAGTACAGTACAGTAGTGCAGTAGGT
GTCGGTACTCGCACACTTGTTGCCGCCGATTTATGCCCGCGGTTCAAAAT
GGAACGCTGATGGAAATCAGTTTGCCTCATATCTCCTGTGTGTGCACAGC
GCTCATTTTTTACAACTTTTGGGGTCAGCACGAGTCGAGTTTGTTTTCGG
ACATGCTGTCCCCCGTAGTTCCCTCTGTTGAGCGAAGAAAAGAAAATGTG
TCTGATAATATCCCGTGCTCGGAGTAATACTGTCGGGCACAGGTGTTTCA
TGTGCAACGGAATTTTGTGTTGTGCAACTGCGCTTCCTTTCCCCCCCTCC
CCCCGCATCGCCGCCGCCGAAGGCGAGAGCCTTAGCCTCTTCTTTGGACG
TCGGAATCGGTGGAATCGTTGTTTGATGGAGGCGTTGTCTCTACAACCAA
ATGTGGGTGCCTCTGTGAACGGTGGAATTCGTTGTTGTTGAATGTTGAAT
TGGAATGGTGAACGTTAAATGTTCAAAATTCGTTTTACGGTGGACCTACT
GCATGTTTTTTTTATCTTGTGAATGCAGATGGAGAGGGCGGGGGGGGAGA
GGCAAGGGTAGGTTTGGTTGATATCTCATACACCGTTCACTATCTCTCCA
TCTGCCCGTAGACCGTCAAGTGTGCGGGGAGGGAATAAAGGCGTTTTTCC
TTGTGCAGGAAAAACCAAACAAAACAAAAAAAAAGCAAGATTTTGGAATT
TTTGTGGTCAACTACAGTATACATGAATACCTTTTTGTCGCGTGTAGTTG
TTTTTCCTCTTAGAGGTACAGCATTGGGTCAAAACTGGATGCAGTTTTTT
TTCAAGATAAAGGAGTGGGATTTCGGTTGGTGGACTCAGGTAACATGGTA
CATGGGGGGAGGGGGGAGGATAAAACATGCAGGTTGGTCAGCCTCCAGTG
CAGTGTCATGCCGCCTCCCCACCCTCGCGCGCTAGCGCGCGCCGTTGAGA
ATTTTAGTGCTTGTACAAGAGACGGGTGACGACTCTACTGGTAATTTGTT
GTGGATAACACGGTAGGGGCCGGGTGTGCACTTGAGGCAAAAGGGTACAG
CTTGCTTCTGCTGCCGCCGCCCCCCCCCCCCCCTCCCTCCCCATTTGCCG
ACGAAAGAGCAGGTTTTATTCCCATTCAAGATAGGGTGGTGTTGCTCACG
AACGGCACAGAAGTAACTGAGGAGATTAAAAACACTGTGGGTGGCAAGAT
CGTGCGCTGCCGCAGGCGCATTGGCATCCACGCCCCTCGCCCACTCTGAC
GAGCGCTCCGTCTGTGGAAGACCCACCCAGGAACACTAGTGGGCTGTTCG
GCGCAACCAATCTCAATCAAGCGCTCCCCAAGCAAGAGTTGGCGGATTAG
GGTGGTGGTAGCGTTGTACGGCTAGTGGGCTGGAAAAACGACAACGGAAA
TAGAACGGTTACGTATTTCAATAGAATGCGGTGTATTTTGCTGTATCTCA
TCGGGATAAAACTTGAGGTGCACAACGCCTTATTGCCTTCTCACGAAATA
GGGAGTCTACAGTAACTACGTGAGAGTATTTTTTTAGGGGTCTGATGCCT
CTACTAGGGCTTAGGCGCATATGGTACAGTAGATGTACTTCCAGGGAGTA
ATGCAAGACACACAATCACAGGCAGTGTGCCGGGGGACGCGATAATGAAA
AATGTTCTCAACGCCTTCGGCTCTTCTTTTTTCATTCGACTTTTTTTCTT
TTTTTTCCCGCGCAATGTGCACAAGGT
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig5340:3750..7326-

>mRNA_H-paniculata_contig5340.12754.1 ID=mRNA_H-paniculata_contig5340.12754.1|Name=mRNA_H-paniculata_contig5340.12754.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=906bp|location=Sequence derived from alignment at H-paniculata_contig5340:3750..7326- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATCTGGTGCGTGGCGTGTTGTGTGCTGTTGTGTGTTTCTCATTCTCTGTT
TCCGTCTTCCTGCTGCTTACGGAGCCAACGGGCTTGGGACAAACCCACCG
CTACCCACGAGGGGGGCGGAGTTCTTTCCAAGTCTTCTGGGCTTTCCAAT
ACCTCTCGTGGGTGTAAGGATATGAGGGAAGCGGCGTTGGCGGCGACGAT
GGTGTGTGCAGTTGTCGCCTTCAACACCAGCTTCAAGAAGTACAGATGGG
GCAAACTGATATGGAGGCGACCAAGGCCACGTCCCCAAAAGCGAGTCTCC
TTCTCCGAGTCTTGCACGGTGATCCATCACCTGCCAGAGCGAGAGGACCT
CACAGATGACGACAGAAGGGCGCTGTGCTGGTCACCTGCGGAGCTACGAG
AGTTCGCGCGATCAACGCTCATCGACGAATGGATTGAGTGCTGGGGGGCG
TGAATCTGGTGCGTGGCGTGTTGTGTGCTGTTGTGTGTTTCTCATTCTCT
GTTTCCGTCTTCCTGCTGCTTACGGAGCCAACGGGCTTGGGACAAACCCA
CCGCTACCCACGAGGGGGGCGGAGTTCTTTCCAAGTCTTCTGGGCTTTCC
AATACCTCTCGTGGGTGTAAGGATATGAGGGAAGCGGCGTTGGCGGCGAC
GATGGTGTGTGCAGTTGTCGCCTTCAACACCAGCTTCAAGAAGTACAGAT
GGGGCAAACTGATATGGAGGCGACCAAGGCCACGTCCCCAAAAGCGAGTC
TCCTTCTCCGAGTCTTGCACGGTGATCCATCACCTGCCAGAGCGAGAGGA
CCTCACAGATGACGACAGAAGGGCGCTGTGCTGGTCACCTGCGGAGCTAC
GAGAGTTCGCGCGATCAACGCTCATCGACGAATGGATTGAGTGCTGGGGG
GCGTGA
back to top