mRNA_H-paniculata_contig5340.12755.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5340.12755.1
Unique NamemRNA_H-paniculata_contig5340.12755.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5340.12755.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5340contigH-paniculata_contig5340:7446..7880 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size437
Cds size435
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930543.1733065-CDS-H-paniculata_contig5340:7445..78801622930543.1733065-CDS-H-paniculata_contig5340:7445..7880Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5340 7446..7880 +
1691481340.945355-CDS-H-paniculata_contig5340:7445..78801691481340.945355-CDS-H-paniculata_contig5340:7445..7880Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5340 7446..7880 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5340.12755.1prot_H-paniculata_contig5340.12755.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5340 7446..7880 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5340.12755.1

>prot_H-paniculata_contig5340.12755.1 ID=prot_H-paniculata_contig5340.12755.1|Name=mRNA_H-paniculata_contig5340.12755.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=145bp
EVLRSCAEAKQTSYRAMAEPHPIQDDHSAPPMEKSSSSSKPSSDPEAIAP
LESQQQQQPPTTPPHTTQHQQYQQQHDDDNSVDSNKDLEHALQQALDSQD
LGRLCKTLGDNYCLPSRAPRAAGSADDSGSDTTAPAGHSSCSESG
back to top

mRNA from alignment at H-paniculata_contig5340:7446..7880+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5340.12755.1 ID=mRNA_H-paniculata_contig5340.12755.1|Name=mRNA_H-paniculata_contig5340.12755.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=435bp|location=Sequence derived from alignment at H-paniculata_contig5340:7446..7880+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGGTGCTCAGGAGTTGCGCAGAGGCGAAGCAAACCAGCTATCGAGCCAT
GGCAGAACCACACCCAATACAAGATGACCATTCTGCACCACCAATGGAGA
AATCTTCATCTTCTTCTAAACCATCCTCGGACCCAGAAGCTATTGCCCCT
CTCGAGTCACAGCAACAACAACAACCCCCAACAACACCACCACACACGAC
CCAGCACCAGCAGTACCAACAGCAACACGACGACGACAACAGTGTTGATA
GCAACAAAGACCTAGAGCACGCCCTGCAGCAAGCTCTAGACTCCCAAGAT
CTGGGCCGGCTGTGTAAAACACTCGGTGATAACTATTGCCTACCAAGCCG
CGCGCCGCGCGCCGCGGGCTCCGCAGACGACTCGGGATCCGACACGACCG
CGCCCGCCGGCCATAGCAGCTGCAGCGAGTCCGGG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig5340:7446..7880+

>mRNA_H-paniculata_contig5340.12755.1 ID=mRNA_H-paniculata_contig5340.12755.1|Name=mRNA_H-paniculata_contig5340.12755.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=870bp|location=Sequence derived from alignment at H-paniculata_contig5340:7446..7880+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGGTGCTCAGGAGTTGCGCAGAGGCGAAGCAAACCAGCTATCGAGCCAT
GGCAGAACCACACCCAATACAAGATGACCATTCTGCACCACCAATGGAGA
AATCTTCATCTTCTTCTAAACCATCCTCGGACCCAGAAGCTATTGCCCCT
CTCGAGTCACAGCAACAACAACAACCCCCAACAACACCACCACACACGAC
CCAGCACCAGCAGTACCAACAGCAACACGACGACGACAACAGTGTTGATA
GCAACAAAGACCTAGAGCACGCCCTGCAGCAAGCTCTAGACTCCCAAGAT
CTGGGCCGGCTGTGTAAAACACTCGGTGATAACTATTGCCTACCAAGCCG
CGCGCCGCGCGCCGCGGGCTCCGCAGACGACTCGGGATCCGACACGACCG
CGCCCGCCGGCCATAGCAGCTGCAGCGAGTCCGGGGAGGTGCTCAGGAGT
TGCGCAGAGGCGAAGCAAACCAGCTATCGAGCCATGGCAGAACCACACCC
AATACAAGATGACCATTCTGCACCACCAATGGAGAAATCTTCATCTTCTT
CTAAACCATCCTCGGACCCAGAAGCTATTGCCCCTCTCGAGTCACAGCAA
CAACAACAACCCCCAACAACACCACCACACACGACCCAGCACCAGCAGTA
CCAACAGCAACACGACGACGACAACAGTGTTGATAGCAACAAAGACCTAG
AGCACGCCCTGCAGCAAGCTCTAGACTCCCAAGATCTGGGCCGGCTGTGT
AAAACACTCGGTGATAACTATTGCCTACCAAGCCGCGCGCCGCGCGCCGC
GGGCTCCGCAGACGACTCGGGATCCGACACGACCGCGCCCGCCGGCCATA
GCAGCTGCAGCGAGTCCGGG
back to top