mRNA_H-paniculata_contig534.12751.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig534.12751.1 vs. uniprot
Match: D8LJK4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJK4_ECTSI) HSP 1 Score: 330 bits (846), Expect = 8.670e-101 Identity = 259/667 (38.83%), Postives = 322/667 (48.28%), Query Frame = 2
Query: 89 IAEGVTLLLIVLLSPIWVPR---RLRDARDCLREKRTKVLK-------------------------------DSSTCDALENDLLNQKDAAERNMVPAND-LPDLGRRFLDFLAQGLGQGRAATVTT------------------QYKFIDISVYDEVVLTTEWGADGFLACCMLFAAFTADGRGLTDSLPGGKERPYPLRTVIVGEGRTGAKANRVKEALLLMREMGIIPTGCDVGVFEGSEGPTERAMPEVEMGREREDSDGDAPTQ-------VRESFLASIGRKACELLLWRGRGEKRGVD-REWGXXXXXXXGHVDLLVSKSFSSALGEAGMGDAMRQLGDLDMDRALRMLHRVFVVQLDDLVKCYGFPKTIAPDRTPNLSAAMAGARGVLPSCLRQLVAASNHALLLGFPDKVAMAASTGRYGNEELWWRASEIAGA-VRKEFRSGRVRLSELGACMADLVASDFEALEAAGLSPSSHQAVFRSLDVGMCLSDVAVPWALLCQHRVYWQHFSRLTTTAGKTSPISSAEGRILPWCGGSSDGDIGGVGRSLGGVEGGVYYSSDEYCLCGDACCERGDTTVCSSCMDGKELKLKGGNGGVLKEYGLDERSESREEGDDVQWREGFKGFVATGFADETGERQEDQEAGYADFAAFLGRVLDQMP 1903
+ EGV +LLI +LS W+P RLR+A C R +R ++L+ D T + L Q ++ A+D PDLGRR+LDFLAQ LGQ +A + F+D+S YDEVVLTTEW ADG LA C+LF+ TA+ + + G K RPYPLRT+IVGEG KA++ +EAL MR ++P C V V E EG + + G E V SFL S C +LL R R + R G G S +L D++ AL ++RV VVQL+DLV+ YGFP+ IAPDRTP L+AA+AGARGVLPSCLR+ +AASNH L FPDKVA A GRY NEEL AS IA A V +E GR R++ELGACMADL+ASDFEALE AGLSP + QAVFRSLDVGM LSDVA WAL+ Q V W+ R+ IS +G G +S G +EG + + D + R GD + GF+ATGFAD E+ EDQEAGY FA F+ RVLDQMP
Sbjct: 12 VLEGVLVLLIGVLSTFWLPLPLYRLREAVTC-RRRRLRLLRQSEESGGKVDVGADSKAIRPVGGRGAGNGGVDGQTTEGAAESLTGQD---PKSAAAASDGFPDLGRRYLDFLAQALGQSHSAAAAAIAAPDRRTGLPRNGGGHPEGCFVDVSAYDEVVLTTEWEADGLLAACLLFSVVTAETKRAPFASDGTK-RPYPLRTLIVGEG----KASQAREALEAMRRTKLVPPDCRVDVLEPGEGAAKGEKRREDRGIEXXXXXXXXXXXXXXXXDGVWRSFLGS-----CSMLLLLLRSTLRWLSGRRRGLARGQGEGXXXXXSGHSLRRQWHRRPSAGGDEELSREDVEEALARVNRVLVVQLEDLVRPYGFPRAIAPDRTPTLAAAVAGARGVLPSCLRREIAASNHLALTEFPDKVASAIKAGRYANEELRVTASSIAAAAVAEEPGMGRGRVAELGACMADLIASDFEALEMAGLSPGTQQAVFRSLDVGMALSDVAAAWALVRQDAVCWESCPRVGLDHSAGRLISLGDGARGEETGENSSGRRXXXXXXXDSIEGSAGRAXXXXXDIVE------DXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKIVVRRTGDGL-CGSCVGGFLATGFADGF-EKLEDQEAGYGAFAVFIVRVLDQMP 656
BLAST of mRNA_H-paniculata_contig534.12751.1 vs. uniprot
Match: A0A6H5KHY3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHY3_9PHAE) HSP 1 Score: 313 bits (803), Expect = 1.580e-95 Identity = 238/573 (41.54%), Postives = 287/573 (50.09%), Query Frame = 2
Query: 392 YDEVVLTTEWGADGFLACCMLFAAFTADGRGLTDSLPGGKERPYPLRTVIVGEGRTGAKANRVKEALLLMREMGIIPTGCDVGVFEGSEGPTERAMPEVEMGREREDSDGDAPTQVRESFLASIG-----RKACELLLWRGRGEKRGVDRE-----------------------------------WGXXXXXXXG--------HVDLLVSKSFSSAL-GEAGMGDAM-------------------RQLGDLDMDRALRMLHRVFVVQLDDLVKCYGFPKTIAPDRTPNLSAAMAGARGVLPSCLRQLVAASNHALLLGFPDKVAMAASTGRYGNEELWWRASEIAGA-VRKEFRSGRVRLSELGACMADLVASDFEALEAAGLSPSSHQAVFRSLDVGMCLSDVAVPWALLCQHRVYWQHFSRLTTTAGKTSPISSAEGRILPWCGGSSDGDIGGVGRSLGGVEGGVYYSSDEYCLCGDACCERGDTTVCSSCMDGKELKLKGGNGGVLKEYGLDERSESREEGDDVQWREGFKGFVATGFADETGERQEDQEAGYADFAAFLGRVLDQMP 1903
YD+VVLTTEW ADG LA C+LF+ TA+ + + G K RPYPLR +IVGEG KAN+ +EAL MR +IP C V V E EG + + + G E E+ + V SFL S R L R RG R RE WG G H+D+ VS FS A G+ G+ +L D++ AL ++RV VVQL+DLV+ YGFP IAPDRTP L+AA+AGARGVLPSCLR+ +AASNH L FPDKVA A GRY NEEL AS IA A V +E GR R++ELGACMADL+ASDFEALE AGLSP + QAVFRSLDVGM LSDVA WAL+ Q V W+ + IS +G S G G S G VEG + GD +RGD+ + GK+ +GG + GD + GF+ATGFAD ER EDQEAGY FA F+ RVLDQMP
Sbjct: 3 YDQVVLTTEWEADGLLAACLLFSVVTAETKRAPFASDGTK-RPYPLRNLIVGEG----KANQAREALEAMRRTNLIPPDCRVDVLEAGEGAAKGEKRQEDRGIEAEEEEEGGGDGVWRSFLGSCSVLLLLRSTLRWLFGRRRGLARTKLREVFNATRKDNQRVLVIALKPPRDLVEVLLESGRASWWGRAMGRGGGRRGCSRYKHIDMFVSGGFSGAFRGQREGGECSAPGHSPREQRHRRPSAGGDEELSRDDVEEALARVNRVLVVQLEDLVRPYGFPTAIAPDRTPTLAAAVAGARGVLPSCLRREIAASNHLALTEFPDKVASAIEAGRYANEELRVTASSIAAAAVAEEPGMGRGRVAELGACMADLIASDFEALEMAGLSPGTQQAVFRSLDVGMALSDVAAAWALVRQDAVCWESCPGVGLGHSGGRLISLGDGARREETEDSRSGRRGRRNSSSGSVEGPAGRPRGDD---GDISEDRGDSRRRTR---GKKGDSRGGKREXXXXXXXXXKILVHRTGDGM-CGSCVGGFLATGFADGF-ERLEDQEAGYGAFAVFIVRVLDQMP 562
BLAST of mRNA_H-paniculata_contig534.12751.1 vs. uniprot
Match: A0A6H5JGT4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGT4_9PHAE) HSP 1 Score: 57.8 bits (138), Expect = 4.160e-6 Identity = 44/138 (31.88%), Postives = 64/138 (46.38%), Query Frame = 2
Query: 35 MEGWTSTGASLLIYTWCSIAEGVTLLLIVLLSPIWVPR---RLRDARDCLREKRTKVLKDSSTCDALENDLLNQK--------------------DAAERNMV---------PANDLPDLGRRFLDFLAQGLGQGRAA 352
ME G++L++ W + EGV +LLI +LS W+P RLR+A C R +R ++L+ S C + K + A ++ A+ PDLGRR+LDFLAQ LGQ +A
Sbjct: 1 MESDGKGGSALVLLLWYKVLEGVLVLLIGVLSTFWLPLPLYRLREAVTC-RRRRLRLLRQSEECGGKAGGGADSKAIRPVGGREAGNGGGHGHTNEGAAESLTRQEPKSAAAAADGFPDLGRRYLDFLAQALGQSHSA 137 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig534.12751.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig534.12751.1 >prot_H-paniculata_contig534.12751.1 ID=prot_H-paniculata_contig534.12751.1|Name=mRNA_H-paniculata_contig534.12751.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=624bp MEGWTSTGASLLIYTWCSIAEGVTLLLIVLLSPIWVPRRLRDARDCLREKback to top mRNA from alignment at H-paniculata_contig534:3117..22448- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig534.12751.1 ID=mRNA_H-paniculata_contig534.12751.1|Name=mRNA_H-paniculata_contig534.12751.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=19332bp|location=Sequence derived from alignment at H-paniculata_contig534:3117..22448- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig534:3117..22448- >mRNA_H-paniculata_contig534.12751.1 ID=mRNA_H-paniculata_contig534.12751.1|Name=mRNA_H-paniculata_contig534.12751.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3744bp|location=Sequence derived from alignment at H-paniculata_contig534:3117..22448- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |