mRNA_H-paniculata_contig5337.12747.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5337.12747.1
Unique NamemRNA_H-paniculata_contig5337.12747.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig5337.12747.1 vs. uniprot
Match: D7FU84_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FU84_ECTSI)

HSP 1 Score: 94.4 bits (233), Expect = 1.270e-22
Identity = 50/64 (78.12%), Postives = 56/64 (87.50%), Query Frame = 1 
Query:   28 MSTERDLHESIDALHEISTMLNTGLDRRTLSILLELIESGVNPEALAAVVKELRREAAALRAQR 219
            M   RD+ +SID LHEIST+L+TGLDR+TLS+LLELIESGVNPEALAAVVKELRREAA L  QR
Sbjct:    1 MPGARDMRDSIDVLHEISTILDTGLDRKTLSLLLELIESGVNPEALAAVVKELRREAATLSRQR 64
[Close]
BLAST of mRNA_H-paniculata_contig5337.12747.1 vs. uniprot
Match: A0A0M0JFJ5_9EUKA (Mitotic-spindle organizing protein 1 n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JFJ5_9EUKA)

HSP 1 Score: 80.9 bits (198), Expect = 7.720e-17
Identity = 42/66 (63.64%), Postives = 52/66 (78.79%), Query Frame = 1 
Query:   28 MSTERDLHESIDALHEISTMLNTGLDRRTLSILLELIESGVNPEALAAVVKELRREAAALRAQR*G 225
            M+ ER   E++D L++IS +L TGLDR TL++L+ L ESGVNPEALAAV+KELRRE AALRA   G
Sbjct:    1 MAAERPREETLDVLYDISQLLQTGLDRETLAVLVGLTESGVNPEALAAVIKELRRETAALRADEAG 66
[Close]
BLAST of mRNA_H-paniculata_contig5337.12747.1 vs. uniprot
Match: A0A4D9CWS9_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CWS9_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 6.440e-16
Identity = 39/63 (61.90%), Postives = 51/63 (80.95%), Query Frame = 1 
Query:   28 MSTERDLHESIDALHEISTMLNTGLDRRTLSILLELIESGVNPEALAAVVKELRREAAALRAQ 216
            M  +++ HE+++A+HEIS +LNTGLDR TL+IL+ L E+GVNPEALA VV+ELR EAA  R Q
Sbjct:    7 MKRDKEWHEALEAMHEISKILNTGLDRETLAILVNLCEAGVNPEALALVVQELRGEAARKRQQ 69
[Close]
BLAST of mRNA_H-paniculata_contig5337.12747.1 vs. uniprot
Match: A0A397UZH9_9GLOM (Mitotic-spindle organizing protein 1 n=1 Tax=Gigaspora rosea TaxID=44941 RepID=A0A397UZH9_9GLOM)

HSP 1 Score: 76.3 bits (186), Expect = 1.450e-15
Identity = 38/54 (70.37%), Postives = 47/54 (87.04%), Query Frame = 1 
Query:   40 RDLHESIDALHEISTMLNTGLDRRTLSILLELIESGVNPEALAAVVKELRREAA 201
            ++  E++D LHEIST+LNTGLDR TLS+ L L E+GVNPEALAAV+KELRRE+A
Sbjct:    7 QEAKETMDILHEISTILNTGLDRDTLSLCLSLCENGVNPEALAAVIKELRRESA 60
[Close]
BLAST of mRNA_H-paniculata_contig5337.12747.1 vs. uniprot
Match: U9SU00_RHIID (Mitotic-spindle organizing protein 1 n=2 Tax=Rhizophagus TaxID=1129544 RepID=U9SU00_RHIID)

HSP 1 Score: 75.9 bits (185), Expect = 2.260e-15
Identity = 37/53 (69.81%), Postives = 47/53 (88.68%), Query Frame = 1 
Query:   52 ESIDALHEISTMLNTGLDRRTLSILLELIESGVNPEALAAVVKELRREAAALR 210
            E++D LHE+ST+LNTGLDR TLS+ L L E+GVNPEALAAV+KELRRE+ +L+
Sbjct:   11 ETLDILHEMSTLLNTGLDRDTLSLCLNLCENGVNPEALAAVIKELRRESVSLK 63
[Close]
BLAST of mRNA_H-paniculata_contig5337.12747.1 vs. uniprot
Match: A0A397T979_9GLOM (Mitotic-spindle organizing protein 1 n=1 Tax=Glomus cerebriforme TaxID=658196 RepID=A0A397T979_9GLOM)

HSP 1 Score: 76.6 bits (187), Expect = 2.770e-15
Identity = 39/53 (73.58%), Postives = 46/53 (86.79%), Query Frame = 1 
Query:   52 ESIDALHEISTMLNTGLDRRTLSILLELIESGVNPEALAAVVKELRREAAALR 210
            E++D LHEIST+LNTGLDR TLSI L L E+GVNPEALAAV+KELRRE  +L+
Sbjct:   11 ETLDILHEISTLLNTGLDRDTLSICLNLCENGVNPEALAAVIKELRRENVSLK 63
[Close]
BLAST of mRNA_H-paniculata_contig5337.12747.1 vs. uniprot
Match: A0A7S1GSS1_HEMAN (Hypothetical protein n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1GSS1_HEMAN)

HSP 1 Score: 77.0 bits (188), Expect = 3.390e-15
Identity = 39/56 (69.64%), Postives = 50/56 (89.29%), Query Frame = 1 
Query:   43 DLHESIDALHEISTMLNTGLDRRTLSILLELIESGVNPEALAAVVKELRREAAALR 210
            D  E+++ L E++ +LNTGLD+++LSI +ELIE+GVNPEALAAVVKELRREAAALR
Sbjct:   48 DAAETLEVLFEMANLLNTGLDKQSLSICIELIENGVNPEALAAVVKELRREAAALR 103
[Close]
BLAST of mRNA_H-paniculata_contig5337.12747.1 vs. uniprot
Match: A0A0L0H5X0_SPIPD (Mitotic-spindle organizing protein 1 n=2 Tax=Spizellomyces TaxID=4815 RepID=A0A0L0H5X0_SPIPD)

HSP 1 Score: 74.7 bits (182), Expect = 6.550e-15
Identity = 37/59 (62.71%), Postives = 48/59 (81.36%), Query Frame = 1 
Query:   40 RDLHESIDALHEISTMLNTGLDRRTLSILLELIESGVNPEALAAVVKELRREAAALRAQ 216
            ++  E++D LHEIS +LNT LDR TLS+ + L ESGVNPEALAAV+KEL+RE+ ALR +
Sbjct:    6 QEARETMDILHEISRILNTSLDRETLSLCVSLCESGVNPEALAAVIKELKRESRALRGE 64
[Close]
BLAST of mRNA_H-paniculata_contig5337.12747.1 vs. uniprot
Match: A0A2Z6SAA0_9GLOM (Mitotic-spindle organizing protein 1 n=5 Tax=Rhizophagus TaxID=1129544 RepID=A0A2Z6SAA0_9GLOM)

HSP 1 Score: 75.9 bits (185), Expect = 6.630e-15
Identity = 37/54 (68.52%), Postives = 47/54 (87.04%), Query Frame = 1 
Query:   52 ESIDALHEISTMLNTGLDRRTLSILLELIESGVNPEALAAVVKELRREAAALRA 213
            E++D LHEIST+LNTGLDR TLS+ L L E+GVNPEALAAV+KELRRE+ + ++
Sbjct:   11 ETLDILHEISTLLNTGLDRDTLSLCLNLCENGVNPEALAAVIKELRRESVSFKS 64
[Close]
BLAST of mRNA_H-paniculata_contig5337.12747.1 vs. uniprot
Match: A0A388L457_CHABU (Uncharacterized protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388L457_CHABU)

HSP 1 Score: 75.1 bits (183), Expect = 7.810e-15
Identity = 40/54 (74.07%), Postives = 47/54 (87.04%), Query Frame = 1 
Query:   52 ESIDALHEISTMLNTGLDRRTLSILLELIESGVNPEALAAVVKELRREAAALRA 213
            E++D  +EIS +LNTGLDR  LSIL+ L E+GVNPEALAAVVKELRREAAAL+A
Sbjct:   11 ETLDIAYEISKVLNTGLDRDMLSILISLCENGVNPEALAAVVKELRREAAALQA 64
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5337.12747.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FU84_ECTSI1.270e-2278.13Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A0M0JFJ5_9EUKA7.720e-1763.64Mitotic-spindle organizing protein 1 n=1 Tax=Chrys... [more]
A0A4D9CWS9_9STRA6.440e-1661.90Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A397UZH9_9GLOM1.450e-1570.37Mitotic-spindle organizing protein 1 n=1 Tax=Gigas... [more]
U9SU00_RHIID2.260e-1569.81Mitotic-spindle organizing protein 1 n=2 Tax=Rhizo... [more]
A0A397T979_9GLOM2.770e-1573.58Mitotic-spindle organizing protein 1 n=1 Tax=Glomu... [more]
A0A7S1GSS1_HEMAN3.390e-1569.64Hypothetical protein n=2 Tax=Hemiselmis andersenii... [more]
A0A0L0H5X0_SPIPD6.550e-1562.71Mitotic-spindle organizing protein 1 n=2 Tax=Spize... [more]
A0A2Z6SAA0_9GLOM6.630e-1568.52Mitotic-spindle organizing protein 1 n=5 Tax=Rhizo... [more]
A0A388L457_CHABU7.810e-1574.07Uncharacterized protein n=1 Tax=Chara braunii TaxI... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5337contigH-paniculata_contig5337:6545..10106 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score93.2
Seed ortholog evalue4.8e-17
Seed eggNOG ortholog2880.D7FU84
Preferred nameMZT1
KEGG koko:K18633
Hectar predicted targeting categoryother localisation
GOsGO:0000226,GO:0000278,GO:0000280,GO:0000775,GO:0000776,GO:0000923,GO:0000928,GO:0000930,GO:0000931,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005640,GO:0005694,GO:0005737,GO:0005813,GO:0005815,GO:0005816,GO:0005819,GO:0005822,GO:0005828,GO:0005829,GO:0005856,GO:0005874,GO:0005876,GO:0006323,GO:0006325,GO:0006333,GO:0006334,GO:0006336,GO:0006338,GO:0006996,GO:0007010,GO:0007017,GO:0007020,GO:0007049,GO:0007051,GO:0007052,GO:0008092,GO:0008104,GO:0008150,GO:0008274,GO:0008275,GO:0009524,GO:0009574,GO:0009987,GO:0012505,GO:0015630,GO:0015631,GO:0016020,GO:0016043,GO:0019867,GO:0022402,GO:0022607,GO:0031021,GO:0031055,GO:0031090,GO:0031109,GO:0031497,GO:0031503,GO:0031965,GO:0031967,GO:0031968,GO:0031975,GO:0032153,GO:0032155,GO:0032991,GO:0033036,GO:0033566,GO:0034080,GO:0034508,GO:0034613,GO:0034622,GO:0034629,GO:0034724,GO:0034728,GO:0042175,GO:0042393,GO:0043015,GO:0043044,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043486,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044425,GO:0044427,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044450,GO:0044464,GO:0044732,GO:0046785,GO:0048285,GO:0051179,GO:0051225,GO:0051258,GO:0051276,GO:0051415,GO:0051417,GO:0051418,GO:0051641,GO:0061495,GO:0061497,GO:0061641,GO:0065003,GO:0065004,GO:0070727,GO:0070925,GO:0071103,GO:0071824,GO:0071840,GO:0072686,GO:0090307,GO:0097435,GO:0098588,GO:0098687,GO:0098805,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:0140014,GO:1902850,GO:1903047
EggNOG free text desc.organizing protein
EggNOG OGs2CYW9@1,2S6UI@2759
Ec32 ortholog descriptionProtein of unknown function DUF3743
Ec32 orthologEc-25_003110.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04812
Exons2
Model size489
Cds size195
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5337.12747.1prot_H-paniculata_contig5337.12747.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5337 6812..10079 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930542.2738574-UTR-H-paniculata_contig5337:6544..68111622930542.2738574-UTR-H-paniculata_contig5337:6544..6811Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5337 6545..6811 -
1691481340.4794695-UTR-H-paniculata_contig5337:6544..68111691481340.4794695-UTR-H-paniculata_contig5337:6544..6811Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5337 6545..6811 -
1622930542.329459-UTR-H-paniculata_contig5337:10079..101061622930542.329459-UTR-H-paniculata_contig5337:10079..10106Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5337 10080..10106 -
1691481340.5279813-UTR-H-paniculata_contig5337:10079..101061691481340.5279813-UTR-H-paniculata_contig5337:10079..10106Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5337 10080..10106 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930542.2954652-CDS-H-paniculata_contig5337:6811..69691622930542.2954652-CDS-H-paniculata_contig5337:6811..6969Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5337 6812..6969 -
1691481340.4995039-CDS-H-paniculata_contig5337:6811..69691691481340.4995039-CDS-H-paniculata_contig5337:6811..6969Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5337 6812..6969 -
1622930542.3108258-CDS-H-paniculata_contig5337:10042..100791622930542.3108258-CDS-H-paniculata_contig5337:10042..10079Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5337 10043..10079 -
1691481340.5100422-CDS-H-paniculata_contig5337:10042..100791691481340.5100422-CDS-H-paniculata_contig5337:10042..10079Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5337 10043..10079 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5337.12747.1

>prot_H-paniculata_contig5337.12747.1 ID=prot_H-paniculata_contig5337.12747.1|Name=mRNA_H-paniculata_contig5337.12747.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=65bp
MSTERDLHESIDALHEISTMLNTGLDRRTLSILLELIESGVNPEALAAVV
KELRREAAALRAQR*
back to top

mRNA from alignment at H-paniculata_contig5337:6545..10106-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5337.12747.1 ID=mRNA_H-paniculata_contig5337.12747.1|Name=mRNA_H-paniculata_contig5337.12747.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3562bp|location=Sequence derived from alignment at H-paniculata_contig5337:6545..10106- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCTTACAGGCCGCAGTGAAGGAAGAATATGTCTACTGAGAGAGATTTGCA
CGAGTCTATAGACGGTGAGGATGAAGAGAGGGAAAGTTCATGATGTGGTG
TGAGGTTGTTTGTACAAAATTTCAGCCTTCTGTTTCACGTCGGAGATCTC
TGATTGCCTTCCACGATGAGTTTGGAAGATCAAAGTAGTTGTCGAAGGAC
GTAGGCAGCTGTTCTGAGGAAGCCTATGAAGAGCAGTGCATTGCGAAAGG
GTGTCTGGTTTGAGTATCACCATGTCCTGTCTGTGTTGCGCACGAGATGT
GAACCCGAAATATATTTTTCCTTCATCCAATCCGTCCTCCGTCCTCCCAT
CATACATATCTTAAAAAATAAAAAATAAATCGTGAAGCTGATGGGGCCTG
CAGACTCTGAACATCCCCAACTGCCAACACACGCTCACTGCATGTGAAGC
GGCCTCAATAAATATAGCGCTATGGATAGTAATTTTGTTTTTCACAGCTG
CGTCCTCGCATCACTATTTTCTTGTCATCTTTACCATCTTTGTACACCAA
GACCCACGAATAACGGCTCGCTGTGCTCGCAGGTTCTTTGATTTACTCAA
TATGATCAAAGCACTTGAACAAAGTATGTAAAATGTTCCGAAACATACAA
CCGTGAACACAACAAGACGAAGAGCGTTCAGCCTCGAGATTACTGGTGAT
CGCGAAGCTTTTTTCTTGCCATTTTTTTGTTACCGTCACTTTCGGTCGGG
AAAATTAACATGCAAACACTCTGTCTCTAGTTAGGCCGCCTGTTAAATAA
TTTAGGCAGTCAAATCTTTCTGAGAGTTTTTTCGACAAAAACAGTTTTCC
AAATCGTTTGTTATAGGTCGAAAATATTTTTGGGAATTTATACATCCATG
CGCAGGCGTGACGATTCACGTACGTGTCTCTGGCCTGCGCGATAGTGGCC
ATCAATTGCATTTATTCTGAAATTAGGATCCACGTTCGCAGCGCGTCCTG
CTGTTCAGTCACTCACACACACCCACGCCCACGCCCACAACTGCAGTAGC
AGCAGCAGCAACAACTACTGTAATTGTGCCCTTCCCGCTCAGTCACTCTC
ACACACGCACACGCACACCCACACCCACAACAGTAGCAGCAGCAACAACT
ACCGTAATTGTCCCTAGGCTTCACCCTGCGCGTTAGCCTCTCCTGCTGTG
GAACATCGACGAACATCCCATCCATCTCCCCTGCATATCATCTACGCACG
CGTTTGCCGCCAGTTTTGCGACATGAATTCGGTGCAGCATGGCTTGCCCC
GTAGCCATGATCTCGTCGTGGACATCACCTACAGATGCTGTATCCACATC
GTCTATATCCATCATATCCATAGCGGGTTCAGTGTGTATTAGGAAGGCGT
GTGTAATGAAACACCTTATTCTGTGAGCTTTGATCTCACAGAAAACTGTC
TAAAAAACCACATGAGATGAAGGGAAAAGGATCCCGATCTCGGAGAGCTT
TTCCCAGGAATATGGCCCTACACCGAACCCGTTCAGGAAATTTCACAGAT
AAACGTGCCCGAGTTATTTTCAGAAAACCTTTTTCACGACTATAAAAAAC
GGCCTTAGGGGGAGACCCGGAAAAAAATATAACAGTCAGAAACGAATCGG
ACGGTGGAGTATCGGGGGATGGAAGCCTAAATGCTCCACCACGCGTGGTC
AAGGTGCGCTAACCGTTTCGTTGCTGACGCCGGTGACCTTTGGCCTGGGT
TTGTCATTATTTATACTAAACATTATATACATGCTGTAATCGATCGTTTC
CGCGATGCGTGCTTTGAGTTGTGGGCACGATGGATTACCGTCTTAGCCAT
CGTCATCCATGACAACAGCACAACGGCGTGACCATGGAGAGCCTTGCAGC
AGCAGCTAGAGGTCATCATCGCTACCGAGCGATACTCTCGGACTTCAGCT
AGCTGCTGCTGCAAAACCGCAGTCCCGCAGCTATCACCTTGGCCTCGTGT
ATCTAGCTTGGCTATACCAGTGTGAACTGTGACGGATCCGTGCTGCATGG
TGTGTGGTCATTTGATATCCCCATCGTCGTGGGACCCTCCGCTTGCGTGG
AGCAAACCCTGAACAAGAAATATACGGGTTTCGAGACATCTGCCTCCCCC
CCCCTAAAAGGGAAGTGGGGATAAGTTTTGCCTGCTCCAATCGCCTGAGA
GGGTCTAGCGAAGAAATGGGCAGGATTTTCGTTCGAACGAAGTCCTCAAA
AACTTGTGCAAAGTTGTTATCGATGCGAAACTGTAAGAAAACGAAACCTG
GCACGAAAAGTGCCCTGATAACAAACGATCTGACGGATGAAGTTGTGTAT
TCGATAATAATGATAGGTTTATCGCAAGGTGGTGTATGTATTTCAGGTAC
ATATAAGTAAAATACAGATATGAACCTTTCAACCTTCGACCCCGTGTCCC
AAGTTAGCTTGCAGTTCACGTGAAGGTGCTGTTAACGCCGGCGCAGAGGT
GAACGTGAGGAGTCGGTGTTGGACGCAAGCGTATCACTTGCGCGATTACT
CTGTGCCCACCTTGGCAGCTGCATAACTCTATATTCGTATGAAGTCGTGT
GTTCTGAAATGATTAACTATATGCGGTTGCGGTGCGTATTCACCAAACAT
TTCATCCACCAAAAAGTGTTGCACATGCACGTGGACCTTGCAGACGACAC
TTTTTGTTTTGTTTTTTTCCAAGAATTTTACTACACATGACACTGAAGCT
TTACCGTGACATTTCCAGTAATAACAGAGTGCATTCAAACACGATGAAAC
GATGTCTGTATGCGCCTCAGCGAAACATTGAACCAGCCAAGCCCTTTTTG
GTATGCACAGAGGAGATATTTTGTAAACGATATCTTCAATTTTGCAACCG
TTTTGCAACACAAAGTACCCGAACCTCAACGTGGTGAGTACTCACGACAG
TTTAGCCATTGAATGAACTGTTTTGTCAGGGTTTGGGTGAACGTTATTGG
GGACATACTATTCACTACTCGTATTTCGTTGTGAAACGTCCGTAGGTATA
TACATTTGGGGGCCTGCCCTCACCTCCTCACTCCCCTTTTGATTTAGTTC
GCTGCCGTTTCTCTTTTTCTACTGAAACTCGCCTCAGCCCTGCACGAAAT
TTCGACCATGCTCAATACGGGGCTCGATCGCCGAACGCTTTCGATCCTGC
TGGAGTTGATCGAGAGTGGCGTGAACCCAGAGGCGTTGGCCGCAGTGGTG
AAGGAACTACGGAGAGAAGCCGCGGCTCTGAGAGCACAGCGATAGGGTAG
GAGTCAGCCCTCAACTGTTTCTGGTCGTTTTACATTTAAAAATATTTATA
TACTAGCTGCCTGCCTTTTTTTTTTCTTCGAAATTCAGACGAAGCTTCTT
GGAAGCGAGAAGGAAACGGCAAGGACACGCACTTGTACTTTCAATTTGTT
GGGCCAAGGTGCTCAGCACTCTGGTTTCAATATTTTTGTTCGTGCCATGT
TTCCGGGGGAAAGAGGATTTATCCGATGGCGGCGCCAGCGGCGCGGAGAC
GGGGGCGGGCCG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig5337:6545..10106-

>mRNA_H-paniculata_contig5337.12747.1 ID=mRNA_H-paniculata_contig5337.12747.1|Name=mRNA_H-paniculata_contig5337.12747.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=390bp|location=Sequence derived from alignment at H-paniculata_contig5337:6545..10106- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCTACTGAGAGAGATTTGCACGAGTCTATAGACGATGTCTACTGAGA
GAGATTTGCACGAGTCTATAGACGCCCTGCACGAAATTTCGACCATGCTC
AATACGGGGCTCGATCGCCGAACGCTTTCGATCCTGCTGGAGTTGATCGA
GAGTGGCGTGAACCCAGAGGCGTTGGCCGCAGTGGTGAAGGAACTACGGA
GAGAAGCCGCGGCTCTGAGAGCACAGCGATAGCCCTGCACGAAATTTCGA
CCATGCTCAATACGGGGCTCGATCGCCGAACGCTTTCGATCCTGCTGGAG
TTGATCGAGAGTGGCGTGAACCCAGAGGCGTTGGCCGCAGTGGTGAAGGA
ACTACGGAGAGAAGCCGCGGCTCTGAGAGCACAGCGATAG
back to top