mRNA_H-paniculata_contig5334.12744.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig5334.12744.1 vs. uniprot
Match: A0A6D2JBX5_9BRAS (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2JBX5_9BRAS) HSP 1 Score: 95.5 bits (236), Expect = 2.900e-20 Identity = 52/103 (50.49%), Postives = 68/103 (66.02%), Query Frame = -2
Query: 180 L*GLVDSDWAEDVEDRKSTTG*VFKLNGGAIRWCSRKQQLVI*SSTEAEYVAAEAGK-ETVYLRDLLGSIGLGCRGSMTLFEGNKSIIFLRKGSGANCRTKHM 485
L G VDSD+A DV+DRKST+G VF L GGA+ W S+KQ +V S+TEAE+VAA G + ++LR++LG IG TLF N S I L K + R+KH+
Sbjct: 220 LVGFVDSDYAGDVDDRKSTSGYVFMLGGGAVSWASKKQPIVTLSTTEAEFVAAAYGACQAMWLRNILGEIGWAQEEGTTLFCDNSSTIKLSKNPVLHGRSKHI 322
BLAST of mRNA_H-paniculata_contig5334.12744.1 vs. uniprot
Match: A0A816R0P7_9BILA (Hypothetical protein n=1 Tax=Rotaria magnacalcarata TaxID=392030 RepID=A0A816R0P7_9BILA) HSP 1 Score: 93.2 bits (230), Expect = 3.380e-20 Identity = 52/105 (49.52%), Postives = 67/105 (63.81%), Query Frame = -2
Query: 177 SL*GLVDSDWAEDVEDRKSTTG*VFKLNGGAIRWCSRKQQLVI*SSTEAEYVA-AEAGKETVYLRDLLGSIGLGCRGSMTLFEGNKSIIFLRKGSGANCRTKHME 488
SL G D+DW EDRKSTTG +F LNG I W S+KQQ V SSTEAEY+A A A KE ++LR LL +G G T++E N+S I + + + RTKH++
Sbjct: 91 SLVGYADADWG-GAEDRKSTTGYLFLLNGSPISWTSKKQQTVALSSTEAEYIALAHATKEAIWLRKLLKDLGQEQIGPTTIYEDNQSTIAIANNTINHQRTKHID 194
BLAST of mRNA_H-paniculata_contig5334.12744.1 vs. uniprot
Match: A0A1Y1N3K4_PHOPY (Uncharacterized protein n=2 Tax=Photinus pyralis TaxID=7054 RepID=A0A1Y1N3K4_PHOPY) HSP 1 Score: 92.8 bits (229), Expect = 5.300e-20 Identity = 55/115 (47.83%), Postives = 71/115 (61.74%), Query Frame = -2
Query: 150 GLVDSDWAEDVEDRKSTTG*VFKLNGGAIRWCSRKQQLVI*SSTEAEYVAA-EAGKETVYLRDLLGSIGLGCRGSMTLFEGNKSIIFLRKGSGANCRTKHMECA----GTKFESG 479
G DSD+A DV+ RKSTTG VF + GAI WCSR+QQ S+TEAEYVAA EA KE ++LR LL I ++ L+ N+S I L K + RTKH++ KF++G
Sbjct: 103 GFSDSDYASDVDTRKSTTGYVFNMANGAITWCSRRQQTTSVSTTEAEYVAAAEATKEAIWLRHLLSEISGKSIENVQLYVDNQSAIKLVKNPIFHKRTKHIDVRYHFIKEKFQNG 217
BLAST of mRNA_H-paniculata_contig5334.12744.1 vs. uniprot
Match: A0A167HPV7_CALVF (Uncharacterized protein (Fragment) n=1 Tax=Calocera viscosa (strain TUFC12733) TaxID=1330018 RepID=A0A167HPV7_CALVF) HSP 1 Score: 89.7 bits (221), Expect = 2.800e-19 Identity = 47/106 (44.34%), Postives = 66/106 (62.26%), Query Frame = -2
Query: 177 HSL*GLVDSDWAEDVEDRKSTTG*VFKLNGGAIRWCSRKQQLVI*SSTEAEYVAAEAG-KETVYLRDLLGSIGLGCRGSMTLFEGNKSIIFLRKGSGANCRTKHME 491
H L G D+DWA D EDRKST+G +F L+G I W +RKQ+ V S+TEAEY+A E ++LR LL +G+ G TL+ N+S + L + + RTKH++
Sbjct: 48 HGLVGWSDADWAGDHEDRKSTSGYIFMLDGMPISWSARKQKTVALSTTEAEYIALTYWWDEALWLRTLLSDLGIQLNGPTTLYVDNQSALSLIRNPVLHSRTKHID 153
BLAST of mRNA_H-paniculata_contig5334.12744.1 vs. uniprot
Match: W4VRP9_9DIPT (Putative retrovirus-related pol polyprotein from transposon tnt (Fragment) n=2 Tax=Corethrella appendiculata TaxID=1370023 RepID=W4VRP9_9DIPT) HSP 1 Score: 93.2 bits (230), Expect = 5.350e-19 Identity = 48/102 (47.06%), Postives = 65/102 (63.73%), Query Frame = -2
Query: 177 GLVDSDWAEDVEDRKSTTG*VFKLNGGAIRWCSRKQQLVI*SSTEAEYVA-AEAGKETVYLRDLLGSIGLGCRGSMTLFEGNKSIIFLRKGSGANCRTKHME 479
G D+DWA D++DR+ST+G VF GGAI WCSRKQQ V SS EAEY++ + A +E ++ + + C G + LF N+S IFL G N RTKH++
Sbjct: 1227 GYCDADWAADIDDRRSTSGFVFMSQGGAISWCSRKQQTVSLSSCEAEYMSLSSAVQEVLWWHGFSQQLNI-CAGKIKLFCDNQSAIFLAGNKGYNPRTKHID 1327
BLAST of mRNA_H-paniculata_contig5334.12744.1 vs. uniprot
Match: UPI001E276921 (secreted RxLR effector protein 161-like n=1 Tax=Harmonia axyridis TaxID=115357 RepID=UPI001E276921) HSP 1 Score: 89.4 bits (220), Expect = 1.010e-18 Identity = 48/106 (45.28%), Postives = 68/106 (64.15%), Query Frame = -2
Query: 177 HSL*GLVDSDWAEDVEDRKSTTG*VFKLNGGAIRWCSRKQQLVI*SSTEAEYVA-AEAGKETVYLRDLLGSIGLGCRGSMTLFEGNKSIIFLRKGSGANCRTKHME 491
+ L G D+DWA D DR+S TG VF+L+GGAI W S KQ+ V SSTEAEY+A +EA KE +YL++LL + + + + +F N+ L +CRTKH++
Sbjct: 93 NDLEGFADADWANDKSDRRSYTGFVFRLSGGAISWQSMKQRTVALSSTEAEYMALSEAVKEAIYLKNLLFEL-VRFKDRIVVFNDNQGAQKLLANPSNHCRTKHID 197
BLAST of mRNA_H-paniculata_contig5334.12744.1 vs. uniprot
Match: A0A7D9KIP6_PARCT (Uncharacterized protein (Fragment) n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9KIP6_PARCT) HSP 1 Score: 87.0 bits (214), Expect = 1.250e-18 Identity = 42/102 (41.18%), Postives = 66/102 (64.71%), Query Frame = -2
Query: 177 GLVDSDWAEDVEDRKSTTG*VFKLNGGAIRWCSRKQQLVI*SSTEAEYVA-AEAGKETVYLRDLLGSIGLGCRGSMTLFEGNKSIIFLRKGSGANCRTKHME 479
G D+DWA D+ DRKST+G F++NG A+ W S+KQ V S+ EA+YVA + A +E +++R LL + + MT++E N+S I + K + R+KH++
Sbjct: 8 GFSDADWAGDLNDRKSTSGYTFQINGAAVSWRSKKQTCVALSTAEAKYVALSAAAQEALWMRQLLTDLNVNFDEQMTIYEDNQSAIAMSKNPQFHGRSKHID 109
BLAST of mRNA_H-paniculata_contig5334.12744.1 vs. uniprot
Match: Q9C7Y1_ARATH (Copia-type polyprotein, putative; 28768-32772 n=3 Tax=Arabidopsis thaliana TaxID=3702 RepID=Q9C7Y1_ARATH) HSP 1 Score: 92.0 bits (227), Expect = 1.350e-18 Identity = 51/103 (49.51%), Postives = 67/103 (65.05%), Query Frame = -2
Query: 180 L*GLVDSDWAEDVEDRKSTTG*VFKLNGGAIRWCSRKQQLVI*SSTEAEYVAAEAGK-ETVYLRDLLGSIGLGCRGSMTLFEGNKSIIFLRKGSGANCRTKHM 485
L G VDSD+A DV+DRKST+G VF L GGAI W S+KQ +V S+TEAE+V+A G + V+LR++L IG G +F N S I L K + R+KH+
Sbjct: 1178 LVGFVDSDYAGDVDDRKSTSGYVFMLGGGAIAWASKKQPIVTLSTTEAEFVSASYGACQAVWLRNVLEEIGCRQEGGTLVFCDNSSTIKLSKNPVLHGRSKHI 1280
BLAST of mRNA_H-paniculata_contig5334.12744.1 vs. uniprot
Match: UPI001F042557 (secreted RxLR effector protein 161-like n=1 Tax=Xenia sp. Carnegie-2017 TaxID=2897299 RepID=UPI001F042557) HSP 1 Score: 88.6 bits (218), Expect = 1.380e-18 Identity = 44/104 (42.31%), Postives = 66/104 (63.46%), Query Frame = -2
Query: 177 L*GLVDSDWAEDVEDRKSTTG*VFKLNGGAIRWCSRKQQLVI*SSTEAEYVA-AEAGKETVYLRDLLGSIGLGCRGSMTLFEGNKSIIFLRKGSGANCRTKHME 485
L G D+DWA D +DR+ST+G VF ++GGAI W S+KQ V S++E+EY+A A +E V+LR L+ + + C + T+ E N I + K + RTKH++
Sbjct: 86 LEGYSDADWASDTDDRRSTSGNVFIISGGAISWASKKQPTVALSTSESEYIALCYATQELVWLRQLMKDLQIDCTAATTIHEDNLGTIAISKNPVLHKRTKHID 189
BLAST of mRNA_H-paniculata_contig5334.12744.1 vs. uniprot
Match: UPI001783A0F0 (secreted RxLR effector protein 161-like n=1 Tax=Rhagoletis pomonella TaxID=28610 RepID=UPI001783A0F0) HSP 1 Score: 87.8 bits (216), Expect = 2.670e-18 Identity = 49/105 (46.67%), Postives = 66/105 (62.86%), Query Frame = -2
Query: 177 SL*GLVDSDWAEDVEDRKSTTG*VFKLNGGAIRWCSRKQQLVI*SSTEAEYVAA-EAGKETVYLRDLLGSIGLGCRGSMTLFEGNKSIIFLRKGSGANCRTKHME 488
+L G DSD+A DV+ RKSTTG VF + GG I W S +Q+ V S+TEAE++AA E KE V+L LL +G +L+ N+S I L K S + RTKH++
Sbjct: 72 TLKGYSDSDFARDVDTRKSTTGYVFLVGGGVITWKSHRQKTVALSTTEAEFMAACEGAKEAVWLHQLLRDVGYAQESPPSLYIDNQSAIRLIKNSELHQRTKHID 176 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5334.12744.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig5334.12744.1 >prot_H-paniculata_contig5334.12744.1 ID=prot_H-paniculata_contig5334.12744.1|Name=mRNA_H-paniculata_contig5334.12744.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=104bp MCFVLQFAPDPLRRKIIDLLPSNNVMLPLHPKPIDPSKSLRYTVSFPASAback to top mRNA from alignment at H-paniculata_contig5334:7690..8181+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig5334.12744.1 ID=mRNA_H-paniculata_contig5334.12744.1|Name=mRNA_H-paniculata_contig5334.12744.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=492bp|location=Sequence derived from alignment at H-paniculata_contig5334:7690..8181+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig5334:7690..8181+ >mRNA_H-paniculata_contig5334.12744.1 ID=mRNA_H-paniculata_contig5334.12744.1|Name=mRNA_H-paniculata_contig5334.12744.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=624bp|location=Sequence derived from alignment at H-paniculata_contig5334:7690..8181+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |