mRNA_H-paniculata_contig5334.12744.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5334.12744.1
Unique NamemRNA_H-paniculata_contig5334.12744.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig5334.12744.1 vs. uniprot
Match: A0A6D2JBX5_9BRAS (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2JBX5_9BRAS)

HSP 1 Score: 95.5 bits (236), Expect = 2.900e-20
Identity = 52/103 (50.49%), Postives = 68/103 (66.02%), Query Frame = -2
Query:  180 L*GLVDSDWAEDVEDRKSTTG*VFKLNGGAIRWCSRKQQLVI*SSTEAEYVAAEAGK-ETVYLRDLLGSIGLGCRGSMTLFEGNKSIIFLRKGSGANCRTKHM 485
            L G VDSD+A DV+DRKST+G VF L GGA+ W S+KQ +V  S+TEAE+VAA  G  + ++LR++LG IG       TLF  N S I L K    + R+KH+
Sbjct:  220 LVGFVDSDYAGDVDDRKSTSGYVFMLGGGAVSWASKKQPIVTLSTTEAEFVAAAYGACQAMWLRNILGEIGWAQEEGTTLFCDNSSTIKLSKNPVLHGRSKHI 322          
BLAST of mRNA_H-paniculata_contig5334.12744.1 vs. uniprot
Match: A0A816R0P7_9BILA (Hypothetical protein n=1 Tax=Rotaria magnacalcarata TaxID=392030 RepID=A0A816R0P7_9BILA)

HSP 1 Score: 93.2 bits (230), Expect = 3.380e-20
Identity = 52/105 (49.52%), Postives = 67/105 (63.81%), Query Frame = -2
Query:  177 SL*GLVDSDWAEDVEDRKSTTG*VFKLNGGAIRWCSRKQQLVI*SSTEAEYVA-AEAGKETVYLRDLLGSIGLGCRGSMTLFEGNKSIIFLRKGSGANCRTKHME 488
            SL G  D+DW    EDRKSTTG +F LNG  I W S+KQQ V  SSTEAEY+A A A KE ++LR LL  +G    G  T++E N+S I +   +  + RTKH++
Sbjct:   91 SLVGYADADWG-GAEDRKSTTGYLFLLNGSPISWTSKKQQTVALSSTEAEYIALAHATKEAIWLRKLLKDLGQEQIGPTTIYEDNQSTIAIANNTINHQRTKHID 194          
BLAST of mRNA_H-paniculata_contig5334.12744.1 vs. uniprot
Match: A0A1Y1N3K4_PHOPY (Uncharacterized protein n=2 Tax=Photinus pyralis TaxID=7054 RepID=A0A1Y1N3K4_PHOPY)

HSP 1 Score: 92.8 bits (229), Expect = 5.300e-20
Identity = 55/115 (47.83%), Postives = 71/115 (61.74%), Query Frame = -2
Query:  150 GLVDSDWAEDVEDRKSTTG*VFKLNGGAIRWCSRKQQLVI*SSTEAEYVAA-EAGKETVYLRDLLGSIGLGCRGSMTLFEGNKSIIFLRKGSGANCRTKHMECA----GTKFESG 479
            G  DSD+A DV+ RKSTTG VF +  GAI WCSR+QQ    S+TEAEYVAA EA KE ++LR LL  I      ++ L+  N+S I L K    + RTKH++        KF++G
Sbjct:  103 GFSDSDYASDVDTRKSTTGYVFNMANGAITWCSRRQQTTSVSTTEAEYVAAAEATKEAIWLRHLLSEISGKSIENVQLYVDNQSAIKLVKNPIFHKRTKHIDVRYHFIKEKFQNG 217          
BLAST of mRNA_H-paniculata_contig5334.12744.1 vs. uniprot
Match: A0A167HPV7_CALVF (Uncharacterized protein (Fragment) n=1 Tax=Calocera viscosa (strain TUFC12733) TaxID=1330018 RepID=A0A167HPV7_CALVF)

HSP 1 Score: 89.7 bits (221), Expect = 2.800e-19
Identity = 47/106 (44.34%), Postives = 66/106 (62.26%), Query Frame = -2
Query:  177 HSL*GLVDSDWAEDVEDRKSTTG*VFKLNGGAIRWCSRKQQLVI*SSTEAEYVAAEAG-KETVYLRDLLGSIGLGCRGSMTLFEGNKSIIFLRKGSGANCRTKHME 491
            H L G  D+DWA D EDRKST+G +F L+G  I W +RKQ+ V  S+TEAEY+A      E ++LR LL  +G+   G  TL+  N+S + L +    + RTKH++
Sbjct:   48 HGLVGWSDADWAGDHEDRKSTSGYIFMLDGMPISWSARKQKTVALSTTEAEYIALTYWWDEALWLRTLLSDLGIQLNGPTTLYVDNQSALSLIRNPVLHSRTKHID 153          
BLAST of mRNA_H-paniculata_contig5334.12744.1 vs. uniprot
Match: W4VRP9_9DIPT (Putative retrovirus-related pol polyprotein from transposon tnt (Fragment) n=2 Tax=Corethrella appendiculata TaxID=1370023 RepID=W4VRP9_9DIPT)

HSP 1 Score: 93.2 bits (230), Expect = 5.350e-19
Identity = 48/102 (47.06%), Postives = 65/102 (63.73%), Query Frame = -2
Query:  177 GLVDSDWAEDVEDRKSTTG*VFKLNGGAIRWCSRKQQLVI*SSTEAEYVA-AEAGKETVYLRDLLGSIGLGCRGSMTLFEGNKSIIFLRKGSGANCRTKHME 479
            G  D+DWA D++DR+ST+G VF   GGAI WCSRKQQ V  SS EAEY++ + A +E ++       + + C G + LF  N+S IFL    G N RTKH++
Sbjct: 1227 GYCDADWAADIDDRRSTSGFVFMSQGGAISWCSRKQQTVSLSSCEAEYMSLSSAVQEVLWWHGFSQQLNI-CAGKIKLFCDNQSAIFLAGNKGYNPRTKHID 1327          
BLAST of mRNA_H-paniculata_contig5334.12744.1 vs. uniprot
Match: UPI001E276921 (secreted RxLR effector protein 161-like n=1 Tax=Harmonia axyridis TaxID=115357 RepID=UPI001E276921)

HSP 1 Score: 89.4 bits (220), Expect = 1.010e-18
Identity = 48/106 (45.28%), Postives = 68/106 (64.15%), Query Frame = -2
Query:  177 HSL*GLVDSDWAEDVEDRKSTTG*VFKLNGGAIRWCSRKQQLVI*SSTEAEYVA-AEAGKETVYLRDLLGSIGLGCRGSMTLFEGNKSIIFLRKGSGANCRTKHME 491
            + L G  D+DWA D  DR+S TG VF+L+GGAI W S KQ+ V  SSTEAEY+A +EA KE +YL++LL  + +  +  + +F  N+    L      +CRTKH++
Sbjct:   93 NDLEGFADADWANDKSDRRSYTGFVFRLSGGAISWQSMKQRTVALSSTEAEYMALSEAVKEAIYLKNLLFEL-VRFKDRIVVFNDNQGAQKLLANPSNHCRTKHID 197          
BLAST of mRNA_H-paniculata_contig5334.12744.1 vs. uniprot
Match: A0A7D9KIP6_PARCT (Uncharacterized protein (Fragment) n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9KIP6_PARCT)

HSP 1 Score: 87.0 bits (214), Expect = 1.250e-18
Identity = 42/102 (41.18%), Postives = 66/102 (64.71%), Query Frame = -2
Query:  177 GLVDSDWAEDVEDRKSTTG*VFKLNGGAIRWCSRKQQLVI*SSTEAEYVA-AEAGKETVYLRDLLGSIGLGCRGSMTLFEGNKSIIFLRKGSGANCRTKHME 479
            G  D+DWA D+ DRKST+G  F++NG A+ W S+KQ  V  S+ EA+YVA + A +E +++R LL  + +     MT++E N+S I + K    + R+KH++
Sbjct:    8 GFSDADWAGDLNDRKSTSGYTFQINGAAVSWRSKKQTCVALSTAEAKYVALSAAAQEALWMRQLLTDLNVNFDEQMTIYEDNQSAIAMSKNPQFHGRSKHID 109          
BLAST of mRNA_H-paniculata_contig5334.12744.1 vs. uniprot
Match: Q9C7Y1_ARATH (Copia-type polyprotein, putative; 28768-32772 n=3 Tax=Arabidopsis thaliana TaxID=3702 RepID=Q9C7Y1_ARATH)

HSP 1 Score: 92.0 bits (227), Expect = 1.350e-18
Identity = 51/103 (49.51%), Postives = 67/103 (65.05%), Query Frame = -2
Query:  180 L*GLVDSDWAEDVEDRKSTTG*VFKLNGGAIRWCSRKQQLVI*SSTEAEYVAAEAGK-ETVYLRDLLGSIGLGCRGSMTLFEGNKSIIFLRKGSGANCRTKHM 485
            L G VDSD+A DV+DRKST+G VF L GGAI W S+KQ +V  S+TEAE+V+A  G  + V+LR++L  IG    G   +F  N S I L K    + R+KH+
Sbjct: 1178 LVGFVDSDYAGDVDDRKSTSGYVFMLGGGAIAWASKKQPIVTLSTTEAEFVSASYGACQAVWLRNVLEEIGCRQEGGTLVFCDNSSTIKLSKNPVLHGRSKHI 1280          
BLAST of mRNA_H-paniculata_contig5334.12744.1 vs. uniprot
Match: UPI001F042557 (secreted RxLR effector protein 161-like n=1 Tax=Xenia sp. Carnegie-2017 TaxID=2897299 RepID=UPI001F042557)

HSP 1 Score: 88.6 bits (218), Expect = 1.380e-18
Identity = 44/104 (42.31%), Postives = 66/104 (63.46%), Query Frame = -2
Query:  177 L*GLVDSDWAEDVEDRKSTTG*VFKLNGGAIRWCSRKQQLVI*SSTEAEYVA-AEAGKETVYLRDLLGSIGLGCRGSMTLFEGNKSIIFLRKGSGANCRTKHME 485
            L G  D+DWA D +DR+ST+G VF ++GGAI W S+KQ  V  S++E+EY+A   A +E V+LR L+  + + C  + T+ E N   I + K    + RTKH++
Sbjct:   86 LEGYSDADWASDTDDRRSTSGNVFIISGGAISWASKKQPTVALSTSESEYIALCYATQELVWLRQLMKDLQIDCTAATTIHEDNLGTIAISKNPVLHKRTKHID 189          
BLAST of mRNA_H-paniculata_contig5334.12744.1 vs. uniprot
Match: UPI001783A0F0 (secreted RxLR effector protein 161-like n=1 Tax=Rhagoletis pomonella TaxID=28610 RepID=UPI001783A0F0)

HSP 1 Score: 87.8 bits (216), Expect = 2.670e-18
Identity = 49/105 (46.67%), Postives = 66/105 (62.86%), Query Frame = -2
Query:  177 SL*GLVDSDWAEDVEDRKSTTG*VFKLNGGAIRWCSRKQQLVI*SSTEAEYVAA-EAGKETVYLRDLLGSIGLGCRGSMTLFEGNKSIIFLRKGSGANCRTKHME 488
            +L G  DSD+A DV+ RKSTTG VF + GG I W S +Q+ V  S+TEAE++AA E  KE V+L  LL  +G       +L+  N+S I L K S  + RTKH++
Sbjct:   72 TLKGYSDSDFARDVDTRKSTTGYVFLVGGGVITWKSHRQKTVALSTTEAEFMAACEGAKEAVWLHQLLRDVGYAQESPPSLYIDNQSAIRLIKNSELHQRTKHID 176          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5334.12744.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6D2JBX5_9BRAS2.900e-2050.49Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A816R0P7_9BILA3.380e-2049.52Hypothetical protein n=1 Tax=Rotaria magnacalcarat... [more]
A0A1Y1N3K4_PHOPY5.300e-2047.83Uncharacterized protein n=2 Tax=Photinus pyralis T... [more]
A0A167HPV7_CALVF2.800e-1944.34Uncharacterized protein (Fragment) n=1 Tax=Calocer... [more]
W4VRP9_9DIPT5.350e-1947.06Putative retrovirus-related pol polyprotein from t... [more]
UPI001E2769211.010e-1845.28secreted RxLR effector protein 161-like n=1 Tax=Ha... [more]
A0A7D9KIP6_PARCT1.250e-1841.18Uncharacterized protein (Fragment) n=2 Tax=Paramur... [more]
Q9C7Y1_ARATH1.350e-1849.51Copia-type polyprotein, putative; 28768-32772 n=3 ... [more]
UPI001F0425571.380e-1842.31secreted RxLR effector protein 161-like n=1 Tax=Xe... [more]
UPI001783A0F02.670e-1846.67secreted RxLR effector protein 161-like n=1 Tax=Rh... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5334contigH-paniculata_contig5334:7690..8181 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-07_000290.2
Exons1
Model size492
Cds size312
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930541.9305694-UTR-H-paniculata_contig5334:7689..78691622930541.9305694-UTR-H-paniculata_contig5334:7689..7869Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5334 7690..7869 +
1691481340.3573973-UTR-H-paniculata_contig5334:7689..78691691481340.3573973-UTR-H-paniculata_contig5334:7689..7869Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5334 7690..7869 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930541.9450817-CDS-H-paniculata_contig5334:7869..81811622930541.9450817-CDS-H-paniculata_contig5334:7869..8181Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5334 7870..8181 +
1691481340.3687057-CDS-H-paniculata_contig5334:7869..81811691481340.3687057-CDS-H-paniculata_contig5334:7869..8181Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5334 7870..8181 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5334.12744.1prot_H-paniculata_contig5334.12744.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5334 7870..8181 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5334.12744.1

>prot_H-paniculata_contig5334.12744.1 ID=prot_H-paniculata_contig5334.12744.1|Name=mRNA_H-paniculata_contig5334.12744.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=104bp
MCFVLQFAPDPLRRKIIDLLPSNNVMLPLHPKPIDPSKSLRYTVSFPASA
ATYSASVLDYMTNCCFLEHQRIAPPFSLKTYPVVDFRSSTSSAQSESTNP
YRL*
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mRNA from alignment at H-paniculata_contig5334:7690..8181+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5334.12744.1 ID=mRNA_H-paniculata_contig5334.12744.1|Name=mRNA_H-paniculata_contig5334.12744.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=492bp|location=Sequence derived from alignment at H-paniculata_contig5334:7690..8181+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGCATTTTGTTTTCATAATACTGTAAAAGAGCATCACATGAGTAAATTTC CAAGTCTCTGGCACTTTACTCTGCTTAGTCCTTTCGTTAAAATGTCAGCA AGTTGGTCGCCGGTCTGCACGTATTTCAATGCCAATACTCCTTTCCGAAC CCACTCTCGAATTTCGTGCCAGCACACTCCATGTGCTTTGTCCTACAGTT TGCGCCAGATCCCTTACGGAGAAAAATAATTGATTTATTGCCCTCAAACA ATGTCATGCTCCCCCTGCATCCCAAACCTATCGATCCTAGTAAATCCCTA AGATATACCGTCTCCTTCCCCGCTTCTGCAGCAACGTACTCTGCCTCTGT ACTGGACTATATGACTAACTGTTGTTTCCTAGAGCACCAACGTATTGCAC CACCGTTCAGCTTGAAAACTTATCCTGTTGTGGACTTTCGGTCCTCGACA TCTTCCGCCCAATCGGAATCAACTAATCCTTACAGACTGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig5334:7690..8181+

>mRNA_H-paniculata_contig5334.12744.1 ID=mRNA_H-paniculata_contig5334.12744.1|Name=mRNA_H-paniculata_contig5334.12744.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=624bp|location=Sequence derived from alignment at H-paniculata_contig5334:7690..8181+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTGCTTTGTCCTACAGTTTGCGCCAGATCCCTTACGGAGAAAAATAAT
TGATTTATTGCCCTCAAACAATGTCATGCTCCCCCTGCATCCCAAACCTA
TCGATCCTAGTAAATCCCTAAGATATACCGTCTCCTTCCCCGCTTCTGCA
GCAACGTACTCTGCCTCTGTACTGGACTATATGACTAACTGTTGTTTCCT
AGAGCACCAACGTATTGCACCACCGTTCAGCTTGAAAACTTATCCTGTTG
TGGACTTTCGGTCCTCGACATCTTCCGCCCAATCGGAATCAACTAATCCT
TACAGACTGTGAATGTGCTTTGTCCTACAGTTTGCGCCAGATCCCTTACG
GAGAAAAATAATTGATTTATTGCCCTCAAACAATGTCATGCTCCCCCTGC
ATCCCAAACCTATCGATCCTAGTAAATCCCTAAGATATACCGTCTCCTTC
CCCGCTTCTGCAGCAACGTACTCTGCCTCTGTACTGGACTATATGACTAA
CTGTTGTTTCCTAGAGCACCAACGTATTGCACCACCGTTCAGCTTGAAAA
CTTATCCTGTTGTGGACTTTCGGTCCTCGACATCTTCCGCCCAATCGGAA
TCAACTAATCCTTACAGACTGTGA
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