mRNA_H-paniculata_contig533.12740.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig533.12740.1 vs. uniprot
Match: D7FYJ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYJ5_ECTSI) HSP 1 Score: 296 bits (759), Expect = 2.450e-80 Identity = 322/922 (34.92%), Postives = 412/922 (44.69%), Query Frame = 1
Query: 571 SNKKMLKIGRNVRFRGDVMECDTVILCGRLEQGFLESRRLTIKENGSFVGDAKVEEAEIFGSLDGSLESTSRIAIRSTGSVMGTGMYRRMTMDDGAELEGTYQCSAR-----RSPRGAAYHADPAEQVAAARALASGVGG---GDSDLAVAFVTGSTARESSTVTPPLEPSPVRGGGGDVWRRERGFVVATPAGTASSAPTVTAAAGTGAASEGSMWWSGSYSRPAMATSDAPPPSTVRSSVSPTAAAPVGGASLGWRISPRRDEAKTSPVTVPGLSPGKASVVVTPKVVGGVKTVGLSPPNLATS----------EAGELFGAHVETPKSVSNPFMSQGGMTPL---RTQTSSASSYRDKVLVPVDTQTVPIPPVAEARNSVAAKIGMWPPLSPTHSRSPV--------TLPKRADVTASPKSTLKAPAAAAAVVVTEART-----------ISGPLSGLPNSEAVDVGGGQAVSRGPGAGVGMHSAGSGGSGASGLEKVGSENGVGVGGGAG-----------------AVSDESSAAMSGTIKEVCVVTLKACEGSGCVLEACWGDPRFRPRYCVAHKRQGHKLMDPVEQEEGDQAAAPDRSVSPPAVAVPDTPAGSEPIVALDDILRARPQAPGIETEGEPGTGGEDGDTTDDEDD----------GWDRGGGKMMEANGSLGGKRTASFQ---------------------------LSSTPRVGREQAVLKKSDTLGAGGGVDDGRGVWASVGGLGGTEAEKEG-------------------------EVLARVATFERLAKKTPKSKVCFGGGGYERGLGRGSKRPSGNNIADFYAAGAESDEDEEETNFSMDTYNKGILLSQAAEVGTHTEDGQLRPQASEQRDQQRLAHLVRVGKLGSALRGKGVSAVGKRR 2979
S+KKMLKIG NVRFRGDVMEC+TV+LCGRL QGF+E++R+TIKE G F+GDAKVEEA+++GSLDGSLES+++++IRSTGSV G +Y++MTM+DG ELEGT++CS R R+ G+A GVGG G D + A +T++PP + SP+ +W+ +G A A AG G G+ +V SSV+ A+P G + P A T+PV G+ G ++ G+ T +P L + EAGELF TP S G+T L R++ SA++ SVAA++G WPP SP S + + T P A A P ST AP A + VT+ + G + + G A SR AGSG VG+ +GV GGGAG A+ +ES + + I +KACE GC LEACWGDPRFRPRYC HK+QG+KLM PVE EEGD++AA S SPP +P ++P+ L R P +E P G GWD P + QA L G DD RG + G E E G +V ARVA + RLA K + + KR S NIADFY G ESD+DEE T +SMD YNKG+LL+QAAEVGTHTEDGQLRPQAS +RDQQ+LAHLVRVGKLG+ALRGKGV++ GKRR
Sbjct: 85 SSKKMLKIGANVRFRGDVMECNTVVLCGRL-QGFVETQRMTIKEGGMFIGDAKVEEADVYGSLDGSLESSAKVSIRSTGSVSGNVIYKKMTMEDGGELEGTFECSNRVGGRLRNREGSAT---------------GGVGGLRRGSRDDSGALAVRDN---QNTISPPGKQSPI------LWQNGQGAAYAGXXXXXXXXXXXEAWAGGGRV--GAALERAGGXXXXXXXXXXXXXXSVMSSVARLEASPRGNP-----VPPGGTAAATTPV---GVGTGGGALRRITPTGAGLSTAVRAPSPLRPTRGLQVQGLGAEAGELFCEEAVTPVGESG-----AGVTNLPSTRSRRLSATAGXXXXXXXXXXXXXXXXXXXXXXTSVAARVGTWPPPSPVPSSTRLWQRRTENHTTPAPAXXXA-PPSTTAAPPAQTSGSVTQNTVKSLVESYKPPYLQGSTTASQRQQQEQPGSVSAASRTLAPPSVADLAGSG--------PVGNGDGV-AGGGAGVGRMGIPAEEKLDNYESALEEESDSDSAAKISG----PVKACEVEGCTLEACWGDPRFRPRYCARHKKQGNKLMSPVEAEEGDKSAASPES-SPPMEPLPSP---AKPLTDLKLGARGLPSVQRVE----PPNGSXXXXXXXXXXXXXXXXXXXXXGWDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFGVQPALPVVQAELV---------GNDDDRG-HHNPDTEGYDEPEPVGYGGYXXXXXXXXXXXXXXXXXXXADDVQARVAAYTRLAGKKQPQTTAHVPSLPKPKAQKPKKRASATNIADFYGGG-ESDDDEEGTGYSMDAYNKGVLLNQAAEVGTHTEDGQLRPQASSERDQQKLAHLVRVGKLGAALRGKGVTS-GKRR 932
BLAST of mRNA_H-paniculata_contig533.12740.1 vs. uniprot
Match: A0A6H5K3I7_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3I7_9PHAE) HSP 1 Score: 219 bits (559), Expect = 5.500e-56 Identity = 230/656 (35.06%), Postives = 321/656 (48.93%), Query Frame = 1
Query: 484 TPPRGHSASSSLTGAAGSGSAGSPAKGGSSNKKMLKIGRNVRFRGDVMECDTVILCGRLEQGFLESRRLTIKENGSFVGDAKVEEAEIFGSLDGSLESTSRIAIRSTGSVMGTGMYRRMTMDDGAELEGTYQCSAR----RSPRGAAYHADPAEQVAAARALASGVGGGDSDLAVAFVTGSTARESSTVTPPLEPSPVRGGGGDVWRRERGFVVATPAGTASSAPTVTAAAGTGAASEGSMWWSGSYSRPAMATSDAPPPSTVRSSVSPTAAAPVGGASLGWRISPRRDEAKTSPVTVPG-----LSP---GKASVVVTPKVVGGVKTVGLSPPNLATSEAGELFGAHVETPKSVSNPFMSQGGMTPLRTQTSSASSYRDKVLVPVDTQTVPIPPVAEARN-------SVAAKIGMWPPLSPTHS-------RSPVTLPKRADVTASPKSTLKAPAAAAAVVVTEART-----------ISGPLSGLPNSEAVDVGGGQAVSRGPGAGVGMHSAGSGGSG--ASGLEKVGSENGVGVGGGAG---------AVSDESSAAMSGTIKEVCVVTLKACEGSGCVLEACWGDPRFRPRYCVAHKRQGHKLMDPVEQEEGDQAAAPDRSVSPPAVAVPDTPAGSEPIVALDDILRARPQA 2307
+P R +AS+ GAA +GS+G P SS KKMLKIG NVRFRGDVMEC+TV+LCGRL QGF+E++R+TI+E G F+GDAKVEEA+++GSLDGSLEST++++IRSTGSV G +Y++MT++DG ELEGT++CS R+ G+A GVGG V + +T++PP + SP+ +W+ +G A A A G ++ +G +V SSV+ ++P G ++P A T+PV G ++P G+++ V P + T GL L +EAGELF TP S G+T L + S SS AE SVAA++G WPP SP S R+ + + +P ST AP + + +T+ + G + + G G AVSR V +G GSG ++G G GVG G A A+ +ES + + I ++KACEG GC LEACWGDPRFRPRYC HK+QG+KLM+PVE EEGD +AA + SPP + +P+ ++P+ L + P A
Sbjct: 58 SPARFGAASADTLGAA-TGSSGGPVVAVSS-KKMLKIGANVRFRGDVMECNTVVLCGRL-QGFVETQRMTIREGGMFIGDAKVEEADVYGSLDGSLESTAKVSIRSTGSVSGNVIYKKMTLEDGGELEGTFECSRAGGRLRNREGSAT---------------GGVGGLRRGSRVDSGASAVRDNQNTISPPGKQSPI------LWQNGQGAAYAGGAXXXXXXXXXEEAWAGGGRVGAALERAGVGGXXXXXXXXXX---SVMSSVAGLESSP-----RGHPVTPGDTAAATTPVGTGGGARRRVTPTGAGRSTAVRAPSPLR--STRGLQVQGLG-AEAGELFSEEAVTPVGESG-----AGVTDLPSARSRRSSATAGXXXXXXXXXXXCDGSAEEEGTSGGGGTSVAARVGTWPPPSPVPSSTRLWQKRTENHITPAPAPSPTPPSTTAAPPSQTSGSITQNTVKSLVESYKPPHLQGTTTASQRQQLEQPGSGSAVSRTL---VSPSVSGLAGSGPVSNGDSVTGGRAGVGRMGIAAEEKLDNYESALEEESDSDSAPRIAG----SVKACEGDGCTLEACWGDPRFRPRYCARHKKQGNKLMNPVEAEEGDTSAASPEA-SPP---MEPSPSPAKPLTDLKLGAKGLPSA 662
BLAST of mRNA_H-paniculata_contig533.12740.1 vs. uniprot
Match: A0A6H5K8A6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8A6_9PHAE) HSP 1 Score: 121 bits (303), Expect = 1.150e-27 Identity = 74/127 (58.27%), Postives = 85/127 (66.93%), Query Frame = 1
Query: 2599 EVLARVATFERLAKKTPKSKVCFGGGGYERGLGRGSKRPSGNNIADFYAAGAESDEDEEETNFSMDTYNKGILLSQAAEVGTHTEDGQLRPQASEQRDQQRLAHLVRVGKLGSALRGKGVSAVGKRR 2979
+V ARVA + RLA K + + KR S NIADFY G ESD DEE+ F MD YNKG+L Q E GTHTEDGQLRPQAS +RDQQ+LAHLVRVGKLG+ALRGKG ++ GKRR
Sbjct: 54 DVQARVAAYTRLAGKKQPQTTAHVPSLPKPMAQKSKKRASATNIADFYGGG-ESD-DEEKEGFGMDPYNKGVLSGQFPEAGTHTEDGQLRPQASSERDQQKLAHLVRVGKLGAALRGKGGTS-GKRR 177
BLAST of mRNA_H-paniculata_contig533.12740.1 vs. uniprot
Match: A0A2E5PLK4_9PROT (Cell shape determination protein CcmA n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E5PLK4_9PROT) HSP 1 Score: 77.0 bits (188), Expect = 2.190e-12 Identity = 41/106 (38.68%), Postives = 67/106 (63.21%), Query Frame = 1
Query: 586 LKIGRNVRFRGDVME-CDTVILCGRLEQGFLESRRLTIKENGSFVGDAKVEEAEIFGSLDGSLESTSRIAIRSTGSVMGTGMYRRMTMDDGAELEGTYQCSARRSP 900
L +G +R + +E CDT+ + GR+E ++SR L I+++G+FVG AK++EAEI G +G+L + R+ I TG V GT Y R+T+++G E+ G + + P
Sbjct: 39 LIVGPEIRLKSAAIEDCDTLYVEGRVEAS-MDSRVLQIEQSGTFVGAAKIDEAEIHGHFEGNLTARERLVIHKTGKVTGTIRYGRLTIEEGGEVAGDIAAAGKELP 143
BLAST of mRNA_H-paniculata_contig533.12740.1 vs. uniprot
Match: UPI000934B8D5 (polymer-forming cytoskeletal protein n=2 Tax=Granulibacter bethesdensis TaxID=364410 RepID=UPI000934B8D5) HSP 1 Score: 76.6 bits (187), Expect = 3.450e-12 Identity = 34/109 (31.19%), Postives = 70/109 (64.22%), Query Frame = 1
Query: 553 PAKGGSSNKKMLKIGRNVRFRGDVMECDTVILCGRLEQGFLESRRLTIKENGSFVGDAKVEEAEIFGSLDGSLESTSRIAIRSTGSVMGTGMYRRMTMDDGAELEGTYQ 879
PA ++ ++ L +GR + +G V + + +++ G +E + + L+I G F G+ +VE+AE+ G++DG+L +T+ + +R++G V+GT RR+ ++DG ++ G+ Q
Sbjct: 30 PAGKDTAERRTLVVGRGISVQGTVQDAERLVVEGTVEATMIRATELSISLGGVFKGEVEVEDAEVAGTIDGTLTATASLIVRASGKVLGTARCRRLQVEDGGQITGSIQ 138
BLAST of mRNA_H-paniculata_contig533.12740.1 vs. uniprot
Match: UPI0019AA2601 (Polymer-forming cytoskeletal protein n=1 Tax=Herminiimonas sp. TaxID=1926289 RepID=UPI0019AA2601) HSP 1 Score: 76.3 bits (186), Expect = 6.520e-12 Identity = 38/98 (38.78%), Postives = 61/98 (62.24%), Query Frame = 1
Query: 586 LKIGRNVRFRGDVMECDTVILCGRLEQGFLESRRLTIKENGSFVGDAKVEEAEIFGSLDGSLESTSRIAIRSTGSVMGTGMYRRMTMDDGAELEGTYQ 879
L +G N++ +G++ +CDT+++ GR+E + SR L I E G+F+G A+V+ AEI G DG L ++ I STG V G Y ++ +++G L G Q
Sbjct: 72 LTVGPNIKLKGEITDCDTLVVEGRVE-ATMNSRVLQIAEGGAFIGTAEVDLAEIRGEFDGELTVRDKLVIYSTGKVSGKIRYGKLVIEEGGNLTGDVQ 168
BLAST of mRNA_H-paniculata_contig533.12740.1 vs. uniprot
Match: UPI00131D3298 (polymer-forming cytoskeletal protein n=1 Tax=Acidisphaera sp. L21 TaxID=1641851 RepID=UPI00131D3298) HSP 1 Score: 74.3 bits (181), Expect = 7.490e-12 Identity = 31/98 (31.63%), Postives = 61/98 (62.24%), Query Frame = 1
Query: 577 KKMLKIGRNVRFRGDVMECDTVILCGRLEQGFLESRRLTIKENGSFVGDAKVEEAEIFGSLDGSLESTSRIAIRSTGSVMGTGMYRRMTMDDGAELEG 870
++ L +GR + +G V + + +++ G +E + + L+I G F G+ +VE+AE+ G++DG+L + + +R+TG V+GT RR+ ++DG + G
Sbjct: 11 RRTLVVGRGISVQGTVQDAERLVVEGTVEASMIHATELSISPGGMFKGEVEVEDAEVAGTIDGTLTARGNLVVRATGRVLGTARCRRLQVEDGGHITG 108
BLAST of mRNA_H-paniculata_contig533.12740.1 vs. uniprot
Match: A0A1Q3VA54_9PROT (Uncharacterized protein n=1 Tax=Rhodospirillales bacterium 69-11 TaxID=1895825 RepID=A0A1Q3VA54_9PROT) HSP 1 Score: 75.1 bits (183), Expect = 9.250e-12 Identity = 33/98 (33.67%), Postives = 62/98 (63.27%), Query Frame = 1
Query: 577 KKMLKIGRNVRFRGDVMECDTVILCGRLEQGFLESRRLTIKENGSFVGDAKVEEAEIFGSLDGSLESTSRIAIRSTGSVMGTGMYRRMTMDDGAELEG 870
++ L +GR + +G V + + +++ G +E + + L I + G F G+ +VEEAEI G++DG+L + + +R+TG V+GT RR+ ++DG ++ G
Sbjct: 38 RRTLVVGRGISVQGTVQDAERLVVEGTVEASMIHATELAIAQGGVFKGEVEVEEAEIAGTIDGTLTVRASLIVRATGRVLGTARCRRLQVEDGGQITG 135
BLAST of mRNA_H-paniculata_contig533.12740.1 vs. uniprot
Match: A0A8J4H9W0_9PROT (Polymer-forming cytoskeletal protein n=1 Tax=Acidicaldus sp. TaxID=1872105 RepID=A0A8J4H9W0_9PROT) HSP 1 Score: 74.7 bits (182), Expect = 1.080e-11 Identity = 32/106 (30.19%), Postives = 64/106 (60.38%), Query Frame = 1
Query: 553 PAKGGSSNKKMLKIGRNVRFRGDVMECDTVILCGRLEQGFLESRRLTIKENGSFVGDAKVEEAEIFGSLDGSLESTSRIAIRSTGSVMGTGMYRRMTMDDGAELEG 870
P + G + L +GR + +G V + + +++ G +E + + L + + G F G+ +VEEAE+ G++DG+L + + +R++G V+GT RR+ ++DG ++ G
Sbjct: 26 PGREGPGEPRTLVVGRGISVQGTVQDAERLVVEGTVESSMIHANELAVAQGGVFKGEVEVEEAEVAGTVDGTLTVRNSLVVRASGRVLGTARCRRLQVEDGGQITG 131
BLAST of mRNA_H-paniculata_contig533.12740.1 vs. uniprot
Match: Q0BV52_GRABC (Uncharacterized protein n=8 Tax=Granulibacter bethesdensis TaxID=364410 RepID=Q0BV52_GRABC) HSP 1 Score: 77.4 bits (189), Expect = 1.230e-11 Identity = 36/119 (30.25%), Postives = 76/119 (63.87%), Query Frame = 1
Query: 523 GAAGSGSAGSPAKGGSSNKKMLKIGRNVRFRGDVMECDTVILCGRLEQGFLESRRLTIKENGSFVGDAKVEEAEIFGSLDGSLESTSRIAIRSTGSVMGTGMYRRMTMDDGAELEGTYQ 879
GA + ++G PA ++ ++ L +GR + +G V + + +++ G +E + + L++ G F G+ +VE+AE+ G++DG+L +T+ + +R++G V+GT RR+ ++DG ++ G+ Q
Sbjct: 113 GAPAAAASGRPAGKDTAERRTLVVGRGISVQGTVQDAERLVVEGTVEATMIRATELSVSLGGVFKGEVEVEDAEVAGTIDGTLTATASLIVRASGKVLGTARCRRLQVEDGGQITGSIQ 231 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig533.12740.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig533.12740.1 >prot_H-paniculata_contig533.12740.1 ID=prot_H-paniculata_contig533.12740.1|Name=mRNA_H-paniculata_contig533.12740.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=901bp MRTMRGFSRKNNGASFQEEQSNTANRSDNDPTDSSLASRSSSSRAGAGGGback to top mRNA from alignment at H-paniculata_contig533:9291..34982+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig533.12740.1 ID=mRNA_H-paniculata_contig533.12740.1|Name=mRNA_H-paniculata_contig533.12740.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=25692bp|location=Sequence derived from alignment at H-paniculata_contig533:9291..34982+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig533:9291..34982+ >mRNA_H-paniculata_contig533.12740.1 ID=mRNA_H-paniculata_contig533.12740.1|Name=mRNA_H-paniculata_contig533.12740.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=5406bp|location=Sequence derived from alignment at H-paniculata_contig533:9291..34982+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |