mRNA_H-paniculata_contig53274.12737.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig53274.12737.1
Unique NamemRNA_H-paniculata_contig53274.12737.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig53274.12737.1 vs. uniprot
Match: A0A485L7G2_9STRA (Aste57867_16617 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L7G2_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 9.690e-8
Identity = 31/85 (36.47%), Postives = 48/85 (56.47%), Query Frame = 1
Query:    1 EESWICDSGATGHATPSAANMSSYRQVKETLRIASGQVIPIVGRGNLNMTFRTSKGNVPLSVL--NVA-----HTPELHYNLFSL 234
            ++ WI DSGAT   TP+    S Y   K++LR+A G+++ ++G G L + F  S+ + P  V   NV      H P+L +NL S+
Sbjct:  362 KDHWIIDSGATASTTPTRTFFSKYVPCKQSLRVADGKMLAVIGYGELCLRFNLSEPDPPAQVRKGNVLFTFGLHCPDLKFNLLSV 446          
BLAST of mRNA_H-paniculata_contig53274.12737.1 vs. uniprot
Match: A0A445M2Q0_GLYSO (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Glycine soja TaxID=3848 RepID=A0A445M2Q0_GLYSO)

HSP 1 Score: 57.0 bits (136), Expect = 1.910e-7
Identity = 34/86 (39.53%), Postives = 55/86 (63.95%), Query Frame = 1
Query:    4 ESWICDSGATGHATPSAANMSSYRQVK-ETLRIASGQVIPIVGRGNLNMTFRTSKGNVPLSVLNVAHTPELHYNLFSLRKVADAGN 258
            +SWI DSGA+ H TPS   +S+Y   +   + +A G+ + IVGRG++N+  +TS G++  ++ NV H P L  NL S+ ++ D G+
Sbjct:  265 DSWIMDSGASFHTTPSKDLLSNYVSGRFGKVYLADGKSLDIVGRGDINI--KTSSGSL-WTLHNVRHIPALKRNLISIGQLDDEGH 347          
BLAST of mRNA_H-paniculata_contig53274.12737.1 vs. uniprot
Match: A0A445M280_GLYSO (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Glycine soja TaxID=3848 RepID=A0A445M280_GLYSO)

HSP 1 Score: 57.0 bits (136), Expect = 1.930e-7
Identity = 34/86 (39.53%), Postives = 55/86 (63.95%), Query Frame = 1
Query:    4 ESWICDSGATGHATPSAANMSSYRQVK-ETLRIASGQVIPIVGRGNLNMTFRTSKGNVPLSVLNVAHTPELHYNLFSLRKVADAGN 258
            +SWI DSGA+ H TPS   +S+Y   +   + +A G+ + IVGRG++N+  +TS G++  ++ NV H P L  NL S+ ++ D G+
Sbjct: 1161 DSWIMDSGASFHTTPSKDLLSNYVSGRFGKVYLADGKSLDIVGRGDINI--KTSSGSL-WTLHNVRHIPALKRNLISIGQLDDEGH 1243          
BLAST of mRNA_H-paniculata_contig53274.12737.1 vs. uniprot
Match: A0A151QVU7_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Cajanus cajan TaxID=3821 RepID=A0A151QVU7_CAJCA)

HSP 1 Score: 53.5 bits (127), Expect = 3.010e-6
Identity = 33/87 (37.93%), Postives = 53/87 (60.92%), Query Frame = 1
Query:    4 ESWICDSGATGHATPSAANMSSYRQVK-ETLRIASGQVIPIVGRGNLNMTFRTSKGNVPLSVLNVAHTPELHYNLFSLRKVADAGNK 261
            ESWI DSGA+ H TPS   +++Y   +   + +A G+ + IVG+G++    RTS G+   ++ NV H P L  NL S+ ++ D G++
Sbjct:  288 ESWIMDSGASFHTTPSNELLTNYVSGRFGKVYLADGKPLNIVGKGDI--AIRTSSGS-HWTLKNVRHIPALKRNLISVGQLDDEGHE 371          
BLAST of mRNA_H-paniculata_contig53274.12737.1 vs. uniprot
Match: A0A151TNK0_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151TNK0_CAJCA)

HSP 1 Score: 53.5 bits (127), Expect = 3.170e-6
Identity = 33/87 (37.93%), Postives = 53/87 (60.92%), Query Frame = 1
Query:    4 ESWICDSGATGHATPSAANMSSYRQVK-ETLRIASGQVIPIVGRGNLNMTFRTSKGNVPLSVLNVAHTPELHYNLFSLRKVADAGNK 261
            ESWI DSGA+ H TPS   +++Y   +   + +A G+ + IVG+G++    RTS G+   ++ NV H P L  NL S+ ++ D G++
Sbjct:  266 ESWIMDSGASFHTTPSNELLTNYVSGRFGKVYLADGKPLNIVGKGDI--AIRTSSGS-HWTLKNVRHIPALKRNLISVGQLDDEGHE 349          
BLAST of mRNA_H-paniculata_contig53274.12737.1 vs. uniprot
Match: H3GNJ4_PHYRM (Retrotran_gag_3 domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GNJ4_PHYRM)

HSP 1 Score: 52.4 bits (124), Expect = 7.740e-6
Identity = 29/89 (32.58%), Postives = 48/89 (53.93%), Query Frame = 1
Query:    1 EESWICDSGATGHATPSAANMSSYRQV-KETLRIASGQVIPIVGRGNLNMTFRTSKGNVPL-SVLNVAHTPELHYNLFSLRKVADAGNK 261
            + +W  DS  T H T S       + +  +T+ +     IPI+G G +NMT   +KG+  + S+ +V ++PEL +NL S+R+  D   K
Sbjct:  392 DPAWTIDSRCTRHVTSSPHWFEDLKTIIGKTITVGGNHQIPILGTGTVNMTVTDTKGSKRIISLSDVLYSPELKFNLLSVRQPVDGNYK 480          
BLAST of mRNA_H-paniculata_contig53274.12737.1 vs. uniprot
Match: A0A2I0VU42_9ASPA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Dendrobium catenatum TaxID=906689 RepID=A0A2I0VU42_9ASPA)

HSP 1 Score: 50.1 bits (118), Expect = 5.290e-5
Identity = 31/86 (36.05%), Postives = 45/86 (52.33%), Query Frame = 1
Query:   10 WICDSGATGHATPSAANMS---SYRQVKETLRIASGQVIPIVGRGNLNMTFRTSKGNVPLSVLNVAHTPELHYNLFSLRKVADAGN 258
            W+ DSGAT H T S  NMS   SY Q  + + +  GQ + I   G   +   + K    L++  + HTP+LHYNL S+ ++    N
Sbjct:  320 WLLDSGATSHLTNSMENMSISNSY-QGTDNITVGDGQTVKIAHTGAGLLPTPSRK----LTLNQLFHTPDLHYNLLSISRLIKDNN 400          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig53274.12737.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A485L7G2_9STRA9.690e-836.47Aste57867_16617 protein n=1 Tax=Aphanomyces stella... [more]
A0A445M2Q0_GLYSO1.910e-739.53Retrovirus-related Pol polyprotein from transposon... [more]
A0A445M280_GLYSO1.930e-739.53Retrovirus-related Pol polyprotein from transposon... [more]
A0A151QVU7_CAJCA3.010e-637.93Retrovirus-related Pol polyprotein from transposon... [more]
A0A151TNK0_CAJCA3.170e-637.93Retrovirus-related Pol polyprotein from transposon... [more]
H3GNJ4_PHYRM7.740e-632.58Retrotran_gag_3 domain-containing protein n=1 Tax=... [more]
A0A2I0VU42_9ASPA5.290e-536.05Retrovirus-related Pol polyprotein from transposon... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig53274contigH-paniculata_contig53274:273..542 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
COG Functional cat.L
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
Exons1
Model size270
Cds size270
Stop0
Taxonomic scopeViridiplantae
Seed ortholog score63.2
Seed ortholog evalue7.4e-08
Seed eggNOG ortholog161934.XP_010672823.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.gag-polypeptide of LTR copia-type
EggNOG OGs37Z1Z@33090,3GN55@35493,COG2801@1,KOG0017@2759
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930540.8675983-CDS-H-paniculata_contig53274:272..5421622930540.8675983-CDS-H-paniculata_contig53274:272..542Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig53274 273..542 +
1691481339.8903959-CDS-H-paniculata_contig53274:272..5421691481339.8903959-CDS-H-paniculata_contig53274:272..542Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig53274 273..542 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig53274.12737.1prot_H-paniculata_contig53274.12737.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig53274 273..542 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig53274.12737.1

>prot_H-paniculata_contig53274.12737.1 ID=prot_H-paniculata_contig53274.12737.1|Name=mRNA_H-paniculata_contig53274.12737.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=90bp
EESWICDSGATGHATPSAANMSSYRQVKETLRIASGQVIPIVGRGNLNMT
FRTSKGNVPLSVLNVAHTPELHYNLFSLRKVADAGNKYVE
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mRNA from alignment at H-paniculata_contig53274:273..542+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig53274.12737.1 ID=mRNA_H-paniculata_contig53274.12737.1|Name=mRNA_H-paniculata_contig53274.12737.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=270bp|location=Sequence derived from alignment at H-paniculata_contig53274:273..542+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAAGAGTCGTGGATTTGTGATAGTGGGGCCACAGGTCACGCAACACCATC TGCGGCTAACATGTCTAGCTATAGGCAAGTTAAAGAGACGCTGCGGATAG CGTCAGGACAAGTGATTCCGATTGTAGGTCGGGGGAACCTGAACATGACA TTTAGGACGAGTAAAGGAAATGTGCCTCTCTCTGTTCTGAATGTCGCACA TACCCCTGAACTTCACTACAATTTATTTTCGCTGAGGAAAGTGGCCGATG CTGGCAATAAATATGTTGAG
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Coding sequence (CDS) from alignment at H-paniculata_contig53274:273..542+

>mRNA_H-paniculata_contig53274.12737.1 ID=mRNA_H-paniculata_contig53274.12737.1|Name=mRNA_H-paniculata_contig53274.12737.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=540bp|location=Sequence derived from alignment at H-paniculata_contig53274:273..542+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAAGAGTCGTGGATTTGTGATAGTGGGGCCACAGGTCACGCAACACCATC
TGCGGCTAACATGTCTAGCTATAGGCAAGTTAAAGAGACGCTGCGGATAG
CGTCAGGACAAGTGATTCCGATTGTAGGTCGGGGGAACCTGAACATGACA
TTTAGGACGAGTAAAGGAAATGTGCCTCTCTCTGTTCTGAATGTCGCACA
TACCCCTGAACTTCACTACAATTTATTTTCGCTGAGGAAAGTGGCCGATG
CTGGCAATAAATATGTTGAGGAAGAGTCGTGGATTTGTGATAGTGGGGCC
ACAGGTCACGCAACACCATCTGCGGCTAACATGTCTAGCTATAGGCAAGT
TAAAGAGACGCTGCGGATAGCGTCAGGACAAGTGATTCCGATTGTAGGTC
GGGGGAACCTGAACATGACATTTAGGACGAGTAAAGGAAATGTGCCTCTC
TCTGTTCTGAATGTCGCACATACCCCTGAACTTCACTACAATTTATTTTC
GCTGAGGAAAGTGGCCGATGCTGGCAATAAATATGTTGAG
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