mRNA_H-paniculata_contig53250.12735.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig53250.12735.1
Unique NamemRNA_H-paniculata_contig53250.12735.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig53250.12735.1 vs. uniprot
Match: K8YS61_NANGC (Retrovirus-related pol polyprotein from transposon tnt 1-94 (Fragment) n=2 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YS61_NANGC)

HSP 1 Score: 128 bits (322), Expect = 1.950e-34
Identity = 68/144 (47.22%), Postives = 93/144 (64.58%), Query Frame = 1
Query:    7 KLGVCSACEKGKASKQPVKTYREERTTESLELVHTDIAGPVD-KSFGGCRFAIIFVDNYSRMRKVYTLRQKSEAIWVLKQFERDVA------RANNLRIKHLRSDQGREYTGKPFRQFCPESGMKQDISVTYTPQQNGVAERSW 417
            K GVC+ CE+ K +K+   T   ER  E LELVHTD+ GPV+ +S GG R+AI F D+Y+R R VY ++ KS+++  LK++ +D+       + N LR   LRSD G EYTG  F+ FC   G++QD  + Y PQ NGVAE+SW
Sbjct:   33 KPGVCATCERAKHTKKSFGTKSRERAKEPLELVHTDVLGPVEVESLGGARYAIGFTDDYTRWRVVYPMKHKSDSLDCLKRYIQDMNISFRDHKVNTLR--GLRSDNGGEYTGVDFKNFCKNHGIRQDFGIPYGPQDNGVAEKSW 174          
BLAST of mRNA_H-paniculata_contig53250.12735.1 vs. uniprot
Match: W7TGQ6_9STRA (Retrotransposon unclassified n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TGQ6_9STRA)

HSP 1 Score: 127 bits (319), Expect = 6.550e-33
Identity = 68/144 (47.22%), Postives = 92/144 (63.89%), Query Frame = 1
Query:    7 KLGVCSACEKGKASKQPVKTYREERTTESLELVHTDIAGPVD-KSFGGCRFAIIFVDNYSRMRKVYTLRQKSEAIWVLKQFERDVA------RANNLRIKHLRSDQGREYTGKPFRQFCPESGMKQDISVTYTPQQNGVAERSW 417
            K GVC  CE+ K +K+   T   ER  E LELVHTD+ GPV+ +S GG R+AI F D+Y+R R VY ++ KSE++  LK++ +D+       + N LR   LRSD G EYTG  F+ FC   G++QD  + Y PQ NG+AE+SW
Sbjct:   53 KPGVCGTCERAKQTKRSFGTKSRERAKEPLELVHTDVLGPVEVESLGGARYAIGFTDDYTRWRVVYPMKHKSESLDCLKRYIQDMNISFRDHKVNTLR--GLRSDNGGEYTGIDFKNFCKNHGIRQDFGMPYGPQDNGLAEKSW 194          
BLAST of mRNA_H-paniculata_contig53250.12735.1 vs. uniprot
Match: K8Z011_NANGC (Retrovirus-related pol polyprotein from transposon tnt 1-94 (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8Z011_NANGC)

HSP 1 Score: 123 bits (308), Expect = 2.420e-32
Identity = 64/142 (45.07%), Postives = 94/142 (66.20%), Query Frame = 1
Query:    7 KLGVCSACEKGKASKQPVKTYREERTTESLELVHTDIAGPVD-KSFGGCRFAIIFVDNYSRMRKVYTLRQKSEAIWVLKQFERDVARAN-NLRIKHL---RSDQGREYTGKPFRQFCPESGMKQDISVTYTPQQNGVAERSW 417
            K GV   CE+ K +K+   T   ER  E LEL+HTD+ GP++ +S GG R+AI F D+Y+R R VY ++ KSE++  LK++ +D++  + + ++K L   RSD G EYTG  F+ FC  +G++QD  + Y PQ NGVAE+SW
Sbjct:   33 KPGVYGTCERAKQTKRSFGTKSWERANEPLELLHTDVLGPIEVESLGGARYAIGFTDDYTRWRVVYPMKHKSESLDCLKRYLKDISVLHRDSKVKTLIGLRSDNGGEYTGINFKHFCKNNGIRQDFGIPYGPQDNGVAEKSW 174          
BLAST of mRNA_H-paniculata_contig53250.12735.1 vs. uniprot
Match: W7TIQ5_9STRA (Gag-pol polyprotein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TIQ5_9STRA)

HSP 1 Score: 129 bits (324), Expect = 3.290e-32
Identity = 69/144 (47.92%), Postives = 92/144 (63.89%), Query Frame = 1
Query:    7 KLGVCSACEKGKASKQPVKTYREERTTESLELVHTDIAGPVD-KSFGGCRFAIIFVDNYSRMRKVYTLRQKSEAIWVLKQFERDVA------RANNLRIKHLRSDQGREYTGKPFRQFCPESGMKQDISVTYTPQQNGVAERSW 417
            K GVC  CE+ K +K+   T   ER  E LELVHTD+ GPV+ +S GG R+AI F D+Y+R R VY ++ KSE++  LK++ +D+       + N LR   LRSD G EYTG  F+ FC   G++QD  + Y PQ NGVAE+SW
Sbjct:   53 KPGVCGTCERAKQTKRSFGTKSRERAKEPLELVHTDVLGPVEVESLGGARYAIGFTDDYTRWRVVYPMKHKSESLDCLKRYIQDMNISFRDHKVNTLR--GLRSDNGGEYTGIDFKNFCKNHGIRQDFGIPYGPQDNGVAEKSW 194          
BLAST of mRNA_H-paniculata_contig53250.12735.1 vs. uniprot
Match: W7T174_9STRA (Gag-pol polyprotein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T174_9STRA)

HSP 1 Score: 127 bits (320), Expect = 1.870e-31
Identity = 68/144 (47.22%), Postives = 92/144 (63.89%), Query Frame = 1
Query:    7 KLGVCSACEKGKASKQPVKTYREERTTESLELVHTDIAGPVD-KSFGGCRFAIIFVDNYSRMRKVYTLRQKSEAIWVLKQFERDVA------RANNLRIKHLRSDQGREYTGKPFRQFCPESGMKQDISVTYTPQQNGVAERSW 417
            K GVC  CE+ K +K+   T   ER  E LELVHTD+ GPV+ +S GG R+AI F D+Y+R R VY ++ KSE++  LK++ +D+       + N LR   LRSD G EYTG  F+ FC   G++QD  + Y PQ NG+AE+SW
Sbjct:   99 KPGVCGTCERAKQTKKSFGTKSRERAKEPLELVHTDVLGPVEVESLGGARYAIGFTDDYTRWRVVYPMKHKSESLDCLKRYIQDMNISFRDHKVNTLR--GLRSDNGGEYTGVDFKNFCKNHGIRQDFGMPYGPQDNGLAEKSW 240          
BLAST of mRNA_H-paniculata_contig53250.12735.1 vs. uniprot
Match: W7T9I7_9STRA (Copia-like retrotransposable element n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T9I7_9STRA)

HSP 1 Score: 127 bits (318), Expect = 2.400e-31
Identity = 67/144 (46.53%), Postives = 93/144 (64.58%), Query Frame = 1
Query:    7 KLGVCSACEKGKASKQPVKTYREERTTESLELVHTDIAGPVD-KSFGGCRFAIIFVDNYSRMRKVYTLRQKSEAIWVLKQFERDVA------RANNLRIKHLRSDQGREYTGKPFRQFCPESGMKQDISVTYTPQQNGVAERSW 417
            K G+C+ CE+ K +K+   T   ER  E LELVHTD+ GPV+ +S GG R+AI F D+Y+R R VY ++ KSE++  LK++ +D+       + N LR   LRSD G EYTG  F+ FC   G++QD  + Y PQ NG+AE+SW
Sbjct:  103 KPGICATCERAKHTKRSFGTKSRERAKEPLELVHTDVLGPVEVESLGGARYAIGFTDDYTRWRVVYPMKHKSESLDCLKRYIQDMNISFRDHKVNTLR--GLRSDNGGEYTGIDFKNFCKNHGIRQDFGMPYGPQDNGLAEKSW 244          
BLAST of mRNA_H-paniculata_contig53250.12735.1 vs. uniprot
Match: W7T9C2_9STRA (Copia-like retrotransposable element (Fragment) n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T9C2_9STRA)

HSP 1 Score: 124 bits (311), Expect = 6.200e-31
Identity = 64/142 (45.07%), Postives = 89/142 (62.68%), Query Frame = 1
Query:    7 KLGVCSACEKGKASKQPVKTYREERTTESLELVHTDIAGPVD-KSFGGCRFAIIFVDNYSRMRKVYTLRQKSEAIWVLKQFERDVARANNLR----IKHLRSDQGREYTGKPFRQFCPESGMKQDISVTYTPQQNGVAERSW 417
            K   C  CE+ K +K+   T   ER  E LELVHTD+ GP++ +S GG R+AI F D+Y+R R VYT+R+KSE++  LK++ +D +  +  R    +  LRSD G EYTG  F+ FC   G++QD  + Y PQ N  AE+SW
Sbjct:    1 KPSACGTCERAKQTKKSFGTKSRERAKEPLELVHTDVLGPIEVESLGGARYAIGFTDDYTRWRVVYTMRRKSESLDCLKRYIKDKSVLHRDRKMKTLIGLRSDNGGEYTGVDFKNFCKNHGIRQDFGIPYGPQDNSAAEKSW 142          
BLAST of mRNA_H-paniculata_contig53250.12735.1 vs. uniprot
Match: A0A7D9IUM0_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9IUM0_PARCT)

HSP 1 Score: 124 bits (311), Expect = 6.810e-31
Identity = 62/142 (43.66%), Postives = 92/142 (64.79%), Query Frame = 1
Query:    1 SGKLGVCSACEKGKASKQPVKTYREERTTESLELVHTDIAGPVD-KSFGGCRFAIIFVDNYSRMRKVYTLRQKSEAIWVLKQFERDVARANNLRIKHLRSDQGREYTGKPFRQFCPESGMKQDISVTYTPQQNGVAERSWRS 423
            +GKL  C AC +G A + P K   E ++T  LELVH+D+AGP+  +SFGG ++ + F+D+YSR   VY ++ KSE +   K+++  VA     +IK LR+D G EYT   F+ F  + G++ + +V Y+PQQNGVAER  R+
Sbjct:  292 TGKLSFCEACAEGMAHRAPFKQVGEIKSTRRLELVHSDVAGPMKTESFGGAKYFVTFIDDYSRCVTVYPMKYKSEVLVKFKEWKAAVANQAECKIKTLRTDNGGEYTSTEFQDFLKKKGIRHETTVPYSPQQNGVAERMSRT 433          
BLAST of mRNA_H-paniculata_contig53250.12735.1 vs. uniprot
Match: A0A8J5C7R4_ZINOF (Integrase catalytic domain-containing protein n=1 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5C7R4_ZINOF)

HSP 1 Score: 122 bits (305), Expect = 7.060e-31
Identity = 62/137 (45.26%), Postives = 86/137 (62.77%), Query Frame = 1
Query:    4 GKLGVCSACEKGKASKQPVKTYREERTTESLELVHTDIAGPVDK-SFGGCRFAIIFVDNYSRMRKVYTLRQKSEAIWVLKQFERDVARANNLRIKHLRSDQGREYTGKPFRQFCPESGMKQDISVTYTPQQNGVAER 411
            GK  VC  C  GK  + P       R  E LEL+HTD+ GP+D  S    R+ I+F+D+++RM  VY +RQKSE   + K+F+  V + +   IK LRSD+G+EYT K F  FC + G+++ ++V YTPQQNGV ER
Sbjct:   10 GKQHVCEGCAFGKQHRLPFPKGVSWRAKEKLELIHTDVCGPMDTLSHAQNRYFILFIDDHTRMTWVYFMRQKSEVFMIFKKFKSLVEKQSGCFIKTLRSDRGKEYTSKEFHNFCEDEGVERQLTVRYTPQQNGVTER 146          
BLAST of mRNA_H-paniculata_contig53250.12735.1 vs. uniprot
Match: A0A8J5MAE0_ZINOF (Integrase catalytic domain-containing protein n=1 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5MAE0_ZINOF)

HSP 1 Score: 122 bits (306), Expect = 1.610e-30
Identity = 63/137 (45.99%), Postives = 86/137 (62.77%), Query Frame = 1
Query:    4 GKLGVCSACEKGKASKQPVKTYREERTTESLELVHTDIAGPVDK-SFGGCRFAIIFVDNYSRMRKVYTLRQKSEAIWVLKQFERDVARANNLRIKHLRSDQGREYTGKPFRQFCPESGMKQDISVTYTPQQNGVAER 411
            GK  VC  C  GK  + P       R  E LEL+HTDI GP+D  S    R+ I+F+D+++RM  VY +RQKSE   + K+F+  V + +   IK LRSD+G+EYT K F  FC + G+++ ++V YTPQQNGV ER
Sbjct:   10 GKQHVCEGCAFGKQHRLPFPKGVSWRAKEKLELIHTDICGPMDTLSHAQNRYFILFIDDHTRMTWVYFMRQKSEVFMIFKKFKSLVEKQSGCFIKTLRSDRGKEYTSKEFHNFCEDEGVERQLTVRYTPQQNGVTER 146          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig53250.12735.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
K8YS61_NANGC1.950e-3447.22Retrovirus-related pol polyprotein from transposon... [more]
W7TGQ6_9STRA6.550e-3347.22Retrotransposon unclassified n=1 Tax=Nannochlorops... [more]
K8Z011_NANGC2.420e-3245.07Retrovirus-related pol polyprotein from transposon... [more]
W7TIQ5_9STRA3.290e-3247.92Gag-pol polyprotein n=1 Tax=Nannochloropsis gadita... [more]
W7T174_9STRA1.870e-3147.22Gag-pol polyprotein n=2 Tax=Nannochloropsis gadita... [more]
W7T9I7_9STRA2.400e-3146.53Copia-like retrotransposable element n=1 Tax=Nanno... [more]
W7T9C2_9STRA6.200e-3145.07Copia-like retrotransposable element (Fragment) n=... [more]
A0A7D9IUM0_PARCT6.810e-3143.66Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A8J5C7R4_ZINOF7.060e-3145.26Integrase catalytic domain-containing protein n=1 ... [more]
A0A8J5MAE0_ZINOF1.610e-3045.99Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig53250contigH-paniculata_contig53250:182..604 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score116.3
Seed ortholog evalue1.1e-23
Seed eggNOG ortholog3641.EOY32548
KEGG koko:K20093
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Mitochondrial protein
EggNOG OGs37THH@33090,3GG2K@35493,COG2801@1,KOG0017@2759
EC3.6.4.12
COG Functional cat.O
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03036
Exons1
Model size423
Cds size423
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930540.5978978-CDS-H-paniculata_contig53250:181..6041622930540.5978978-CDS-H-paniculata_contig53250:181..604Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig53250 182..604 -
1691481339.798061-CDS-H-paniculata_contig53250:181..6041691481339.798061-CDS-H-paniculata_contig53250:181..604Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig53250 182..604 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig53250.12735.1prot_H-paniculata_contig53250.12735.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig53250 182..604 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig53250.12735.1

>prot_H-paniculata_contig53250.12735.1 ID=prot_H-paniculata_contig53250.12735.1|Name=mRNA_H-paniculata_contig53250.12735.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=141bp
SGKLGVCSACEKGKASKQPVKTYREERTTESLELVHTDIAGPVDKSFGGC
RFAIIFVDNYSRMRKVYTLRQKSEAIWVLKQFERDVARANNLRIKHLRSD
QGREYTGKPFRQFCPESGMKQDISVTYTPQQNGVAERSWRS
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mRNA from alignment at H-paniculata_contig53250:182..604-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig53250.12735.1 ID=mRNA_H-paniculata_contig53250.12735.1|Name=mRNA_H-paniculata_contig53250.12735.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=423bp|location=Sequence derived from alignment at H-paniculata_contig53250:182..604- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGCGGGAAGCTCGGTGTCTGCTCGGCGTGTGAGAAGGGGAAAGCGTCGAA GCAGCCTGTGAAAACGTATCGAGAAGAGCGGACGACCGAGTCGTTGGAGC TGGTGCACACCGACATAGCAGGACCGGTGGACAAGTCCTTCGGAGGATGC CGCTTCGCCATCATCTTTGTCGACAACTACAGCAGAATGCGCAAAGTCTA TACTTTGCGACAAAAGTCGGAGGCGATATGGGTCCTGAAGCAATTTGAGA GGGACGTAGCGAGGGCAAACAATTTGCGGATTAAGCACCTTCGGTCGGAT CAGGGACGAGAATATACTGGGAAGCCTTTCAGGCAATTCTGCCCGGAAAG TGGCATGAAGCAGGATATCTCTGTCACCTACACACCGCAGCAAAACGGTG TGGCGGAGCGTAGCTGGCGCAGC
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Coding sequence (CDS) from alignment at H-paniculata_contig53250:182..604-

>mRNA_H-paniculata_contig53250.12735.1 ID=mRNA_H-paniculata_contig53250.12735.1|Name=mRNA_H-paniculata_contig53250.12735.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=846bp|location=Sequence derived from alignment at H-paniculata_contig53250:182..604- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGCGGGAAGCTCGGTGTCTGCTCGGCGTGTGAGAAGGGGAAAGCGTCGAA
GCAGCCTGTGAAAACGTATCGAGAAGAGCGGACGACCGAGTCGTTGGAGC
TGGTGCACACCGACATAGCAGGACCGGTGGACAAGTCCTTCGGAGGATGC
CGCTTCGCCATCATCTTTGTCGACAACTACAGCAGAATGCGCAAAGTCTA
TACTTTGCGACAAAAGTCGGAGGCGATATGGGTCCTGAAGCAATTTGAGA
GGGACGTAGCGAGGGCAAACAATTTGCGGATTAAGCACCTTCGGTCGGAT
CAGGGACGAGAATATACTGGGAAGCCTTTCAGGCAATTCTGCCCGGAAAG
TGGCATGAAGCAGGATATCTCTGTCACCTACACACCGCAGCAAAACGGTG
TGGCGGAGCGTAGCTGGCGCAGCAGCGGGAAGCTCGGTGTCTGCTCGGCG
TGTGAGAAGGGGAAAGCGTCGAAGCAGCCTGTGAAAACGTATCGAGAAGA
GCGGACGACCGAGTCGTTGGAGCTGGTGCACACCGACATAGCAGGACCGG
TGGACAAGTCCTTCGGAGGATGCCGCTTCGCCATCATCTTTGTCGACAAC
TACAGCAGAATGCGCAAAGTCTATACTTTGCGACAAAAGTCGGAGGCGAT
ATGGGTCCTGAAGCAATTTGAGAGGGACGTAGCGAGGGCAAACAATTTGC
GGATTAAGCACCTTCGGTCGGATCAGGGACGAGAATATACTGGGAAGCCT
TTCAGGCAATTCTGCCCGGAAAGTGGCATGAAGCAGGATATCTCTGTCAC
CTACACACCGCAGCAAAACGGTGTGGCGGAGCGTAGCTGGCGCAGC
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