mRNA_H-paniculata_contig5325.12734.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5325.12734.1
Unique NamemRNA_H-paniculata_contig5325.12734.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5325.12734.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5325contigH-paniculata_contig5325:12469..12679 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size211
Cds size192
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930540.5371315-UTR-H-paniculata_contig5325:12468..124871622930540.5371315-UTR-H-paniculata_contig5325:12468..12487Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5325 12469..12487 +
1691481339.776429-UTR-H-paniculata_contig5325:12468..124871691481339.776429-UTR-H-paniculata_contig5325:12468..12487Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5325 12469..12487 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930540.5541906-CDS-H-paniculata_contig5325:12487..126791622930540.5541906-CDS-H-paniculata_contig5325:12487..12679Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5325 12488..12679 +
1691481339.7872798-CDS-H-paniculata_contig5325:12487..126791691481339.7872798-CDS-H-paniculata_contig5325:12487..12679Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5325 12488..12679 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5325.12734.1prot_H-paniculata_contig5325.12734.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5325 12488..12679 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5325.12734.1

>prot_H-paniculata_contig5325.12734.1 ID=prot_H-paniculata_contig5325.12734.1|Name=mRNA_H-paniculata_contig5325.12734.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=64bp
MGANGVPANVVTYTAVIKACGNGGQWETALSLFREMRAEGLIANVVSYNT
ALTGCDDDDDDRFW
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mRNA from alignment at H-paniculata_contig5325:12469..12679+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5325.12734.1 ID=mRNA_H-paniculata_contig5325.12734.1|Name=mRNA_H-paniculata_contig5325.12734.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=211bp|location=Sequence derived from alignment at H-paniculata_contig5325:12469..12679+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCTGGAACTGTTGAGGGAAATGGGGGCGAATGGTGTTCCTGCAAACGTGG
TTACCTACACCGCCGTAATAAAGGCATGTGGGAACGGAGGGCAGTGGGAG
ACCGCTTTGAGTCTTTTCCGGGAGATGCGAGCTGAAGGTCTCATTGCTAA
TGTCGTGAGTTACAACACCGCCCTCACTGGTTGCGATGACGATGATGATG
ATCGATTTTGG
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Coding sequence (CDS) from alignment at H-paniculata_contig5325:12469..12679+

>mRNA_H-paniculata_contig5325.12734.1 ID=mRNA_H-paniculata_contig5325.12734.1|Name=mRNA_H-paniculata_contig5325.12734.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=384bp|location=Sequence derived from alignment at H-paniculata_contig5325:12469..12679+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGGGCGAATGGTGTTCCTGCAAACGTGGTTACCTACACCGCCGTAAT
AAAGGCATGTGGGAACGGAGGGCAGTGGGAGACCGCTTTGAGTCTTTTCC
GGGAGATGCGAGCTGAAGGTCTCATTGCTAATGTCGTGAGTTACAACACC
GCCCTCACTGGTTGCGATGACGATGATGATGATCGATTTTGGATGGGGGC
GAATGGTGTTCCTGCAAACGTGGTTACCTACACCGCCGTAATAAAGGCAT
GTGGGAACGGAGGGCAGTGGGAGACCGCTTTGAGTCTTTTCCGGGAGATG
CGAGCTGAAGGTCTCATTGCTAATGTCGTGAGTTACAACACCGCCCTCAC
TGGTTGCGATGACGATGATGATGATCGATTTTGG
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