prot_H-paniculata_contig5325.12734.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig5325.12734.1
Unique Nameprot_H-paniculata_contig5325.12734.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length64
Homology
BLAST of mRNA_H-paniculata_contig5325.12734.1 vs. uniprot
Match: A0A813FMG5_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813FMG5_POLGL)

HSP 1 Score: 54.7 bits (130), Expect = 4.370e-7
Identity = 24/44 (54.55%), Postives = 31/44 (70.45%), Query Frame = 0
Query:   13 YTAVIKACGNGGQWETALSLFREMRAEGLIANVVSYNTALTGCD 56
            + AV+ ACG  GQW  AL    E+R +GL A VVS+NTA++GCD
Sbjct:  112 FEAVMSACGKVGQWVPALEQLSELRKQGLEATVVSFNTAISGCD 155          
BLAST of mRNA_H-paniculata_contig5325.12734.1 vs. uniprot
Match: A0A830CS07_9LAMI (Pentatricopeptide repeat-containing protein at1g20230 n=1 Tax=Phtheirospermum japonicum TaxID=374723 RepID=A0A830CS07_9LAMI)

HSP 1 Score: 51.2 bits (121), Expect = 7.240e-6
Identity = 25/49 (51.02%), Postives = 35/49 (71.43%), Query Frame = 0
Query:    9 NVVTYTAVIKACGNGGQWETALSLFREMRAEGLIANVVSYNTALTGCDD 57
            NVV++TA+I      G+ E ALS FR+M+ EGLIAN ++Y +AL+ C D
Sbjct:  212 NVVSWTALITGLAQNGEGERALSYFRKMQDEGLIANDMTYVSALSACAD 260          
BLAST of mRNA_H-paniculata_contig5325.12734.1 vs. uniprot
Match: A0A812T1H4_9DINO (Hypothetical protein (Fragment) n=1 Tax=Symbiodinium necroappetens TaxID=1628268 RepID=A0A812T1H4_9DINO)

HSP 1 Score: 50.1 bits (118), Expect = 1.850e-5
Identity = 22/37 (59.46%), Postives = 28/37 (75.68%), Query Frame = 0
Query:    8 ANVVTYTAVIKACGNGGQWETALSLFREMRAEGLIAN 44
            A VVTY++VI AC  GGQW+ AL LF +M+ EG+ AN
Sbjct:  142 AEVVTYSSVITACERGGQWQRALLLFHQMKVEGVEAN 178          
BLAST of mRNA_H-paniculata_contig5325.12734.1 vs. uniprot
Match: A0A812WZQ8_9DINO (Hypothetical protein n=1 Tax=Symbiodinium sp. CCMP2592 TaxID=631055 RepID=A0A812WZQ8_9DINO)

HSP 1 Score: 50.1 bits (118), Expect = 1.870e-5
Identity = 22/37 (59.46%), Postives = 28/37 (75.68%), Query Frame = 0
Query:    8 ANVVTYTAVIKACGNGGQWETALSLFREMRAEGLIAN 44
            A VVTY++VI AC  GGQW+ AL LF +M+ EG+ AN
Sbjct:  143 AEVVTYSSVITACERGGQWQRALLLFHQMKVEGVEAN 179          
BLAST of mRNA_H-paniculata_contig5325.12734.1 vs. uniprot
Match: A0A812IKF5_9DINO (EMB2654 protein n=1 Tax=Symbiodinium sp. CCMP2456 TaxID=1519616 RepID=A0A812IKF5_9DINO)

HSP 1 Score: 50.1 bits (118), Expect = 1.870e-5
Identity = 22/37 (59.46%), Postives = 28/37 (75.68%), Query Frame = 0
Query:    8 ANVVTYTAVIKACGNGGQWETALSLFREMRAEGLIAN 44
            A VVTY++VI AC  GGQW+ AL LF +M+ EG+ AN
Sbjct:  114 AEVVTYSSVITACERGGQWQRALLLFHQMKVEGVEAN 150          
BLAST of mRNA_H-paniculata_contig5325.12734.1 vs. uniprot
Match: A0A812KEK9_SYMMI (Rf1 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812KEK9_SYMMI)

HSP 1 Score: 50.1 bits (118), Expect = 1.880e-5
Identity = 22/37 (59.46%), Postives = 28/37 (75.68%), Query Frame = 0
Query:    8 ANVVTYTAVIKACGNGGQWETALSLFREMRAEGLIAN 44
            A VVTY++VI AC  GGQW+ AL LF +M+ EG+ AN
Sbjct:  140 AEVVTYSSVITACERGGQWQRALLLFHQMKVEGVEAN 176          
BLAST of mRNA_H-paniculata_contig5325.12734.1 vs. uniprot
Match: A0A1Q9CRJ3_SYMMI (Protein Rf1, mitochondrial n=3 Tax=Symbiodinium TaxID=2949 RepID=A0A1Q9CRJ3_SYMMI)

HSP 1 Score: 50.1 bits (118), Expect = 1.880e-5
Identity = 22/37 (59.46%), Postives = 28/37 (75.68%), Query Frame = 0
Query:    8 ANVVTYTAVIKACGNGGQWETALSLFREMRAEGLIAN 44
            A VVTY++VI AC  GGQW+ AL LF +M+ EG+ AN
Sbjct:  140 AEVVTYSSVITACERGGQWQRALLLFHQMKVEGVEAN 176          
BLAST of mRNA_H-paniculata_contig5325.12734.1 vs. uniprot
Match: A0A7S1NQB7_9EUGL (Hypothetical protein (Fragment) n=2 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1NQB7_9EUGL)

HSP 1 Score: 47.4 bits (111), Expect = 4.480e-5
Identity = 20/51 (39.22%), Postives = 32/51 (62.75%), Query Frame = 0
Query:    3 ANGVPANVVTYTAVIKACGNGGQWETALSLFREMRAEGLIANVVSYNTALT 53
            A+G+  NV  Y A I AC    +W  AL L  +M+A+G+ A+ ++YN A++
Sbjct:   73 ASGMVGNVFMYNAAINACAKSKKWCEALQLMEDMQAQGIPADTITYNAAIS 123          
BLAST of mRNA_H-paniculata_contig5325.12734.1 vs. uniprot
Match: UPI000900BA9C (pentatricopeptide repeat-containing protein At3g24000, mitochondrial n=2 Tax=Ipomoea TaxID=4119 RepID=UPI000900BA9C)

HSP 1 Score: 48.1 bits (113), Expect = 9.020e-5
Identity = 19/47 (40.43%), Postives = 32/47 (68.09%), Query Frame = 0
Query:    9 NVVTYTAVIKACGNGGQWETALSLFREMRAEGLIANVVSYNTALTGC 55
            NVVT+T+++ AC N G+ E  +SL+++MR EG+  N  ++   +T C
Sbjct:  150 NVVTWTSMMVACSNNGKLEQVISLYKQMRHEGVSCNQNTFTAVITSC 196          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5325.12734.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A813FMG5_POLGL4.370e-754.55Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
A0A830CS07_9LAMI7.240e-651.02Pentatricopeptide repeat-containing protein at1g20... [more]
A0A812T1H4_9DINO1.850e-559.46Hypothetical protein (Fragment) n=1 Tax=Symbiodini... [more]
A0A812WZQ8_9DINO1.870e-559.46Hypothetical protein n=1 Tax=Symbiodinium sp. CCMP... [more]
A0A812IKF5_9DINO1.870e-559.46EMB2654 protein n=1 Tax=Symbiodinium sp. CCMP2456 ... [more]
A0A812KEK9_SYMMI1.880e-559.46Rf1 protein n=1 Tax=Symbiodinium microadriaticum T... [more]
A0A1Q9CRJ3_SYMMI1.880e-559.46Protein Rf1, mitochondrial n=3 Tax=Symbiodinium Ta... [more]
A0A7S1NQB7_9EUGL4.480e-539.22Hypothetical protein (Fragment) n=2 Tax=Eutreptiel... [more]
UPI000900BA9C9.020e-540.43pentatricopeptide repeat-containing protein At3g24... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 9..55
e-value: 7.5E-13
score: 48.5
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 11..44
e-value: 1.2E-10
score: 38.9
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 9..43
score: 12.299
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 1..60
e-value: 4.8E-17
score: 63.8

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5325contigH-paniculata_contig5325:12488..12679 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5325.12734.1mRNA_H-paniculata_contig5325.12734.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig5325 12469..12679 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig5325.12734.1 ID=prot_H-paniculata_contig5325.12734.1|Name=mRNA_H-paniculata_contig5325.12734.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=64bp
MGANGVPANVVTYTAVIKACGNGGQWETALSLFREMRAEGLIANVVSYNT
ALTGCDDDDDDRFW
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf