prot_H-paniculata_contig5324.12733.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig5324.12733.1
Unique Nameprot_H-paniculata_contig5324.12733.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length83
Homology
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BLAST of mRNA_H-paniculata_contig5324.12733.1 vs. uniprot
Match: D8LKL0_ECTSI (Similar to CG4672-PA isoform 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKL0_ECTSI)

HSP 1 Score: 105 bits (262), Expect = 7.950e-25
Identity = 50/68 (73.53%), Postives = 61/68 (89.71%), Query Frame = 0 
Query:    1 MGLALSLLQGGILVAYILFSVVKSILPSSFKVPRAGHTTLAFAVMGTAHVLGLPFFLDKLDKAHAYGQ 68
            MGLALSLLQGGIL+AY++F+VVK++LP SFK PR GHTTLA  ++  AHV+GLPFFLDKL++AHAYGQ
Sbjct:    1 MGLALSLLQGGILLAYMVFTVVKAVLPRSFKAPRVGHTTLAVTMLAAAHVMGLPFFLDKLNQAHAYGQ 68
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5324.12733.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LKL0_ECTSI7.950e-2573.53Similar to CG4672-PA isoform 1 n=1 Tax=Ectocarpus ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 6..26
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..5
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 38..57
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 27..37
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 58..82
NoneNo IPR availableTMHMMTMhelixcoord: 5..22
NoneNo IPR availableTMHMMTMhelixcoord: 35..57

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5324contigH-paniculata_contig5324:7994..9982 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5324.12733.1mRNA_H-paniculata_contig5324.12733.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig5324 7638..10056 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig5324.12733.1 ID=prot_H-paniculata_contig5324.12733.1|Name=mRNA_H-paniculata_contig5324.12733.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=83bp
MGLALSLLQGGILVAYILFSVVKSILPSSFKVPRAGHTTLAFAVMGTAHV
LGLPFFLDKLDKAHAYGQYVTETVAQIDIRRS*
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