mRNA_H-paniculata_contig5324.12733.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5324.12733.1
Unique NamemRNA_H-paniculata_contig5324.12733.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig5324.12733.1 vs. uniprot
Match: D8LKL0_ECTSI (Similar to CG4672-PA isoform 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKL0_ECTSI)

HSP 1 Score: 108 bits (271), Expect = 5.770e-24
Identity = 50/68 (73.53%), Postives = 61/68 (89.71%), Query Frame = 3 
Query:   75 MGLALSLLQGGILVAYILFSVVKSILPSSFKVPRAGHTTLAFAVMGTAHVLGLPFFLDKLDKAHAYGQ 278
            MGLALSLLQGGIL+AY++F+VVK++LP SFK PR GHTTLA  ++  AHV+GLPFFLDKL++AHAYGQ
Sbjct:    1 MGLALSLLQGGILLAYMVFTVVKAVLPRSFKAPRVGHTTLAVTMLAAAHVMGLPFFLDKLNQAHAYGQ 68
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5324.12733.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LKL0_ECTSI5.770e-2473.53Similar to CG4672-PA isoform 1 n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5324contigH-paniculata_contig5324:7638..10056 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score106.3
Seed ortholog evalue7e-21
Seed eggNOG ortholog2880.D8LKL0
Preferred nameSERINC3
Hectar predicted targeting categorysignal peptide
GOsGO:0000322,GO:0000323,GO:0000324,GO:0000329,GO:0002252,GO:0002376,GO:0003333,GO:0003674,GO:0005215,GO:0005342,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0005783,GO:0005789,GO:0005794,GO:0005886,GO:0006082,GO:0006520,GO:0006563,GO:0006564,GO:0006575,GO:0006629,GO:0006643,GO:0006644,GO:0006650,GO:0006658,GO:0006665,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006820,GO:0006865,GO:0006950,GO:0006952,GO:0006955,GO:0007272,GO:0007275,GO:0007399,GO:0008150,GO:0008152,GO:0008324,GO:0008366,GO:0008509,GO:0008514,GO:0008610,GO:0008652,GO:0009058,GO:0009069,GO:0009070,GO:0009597,GO:0009605,GO:0009607,GO:0009615,GO:0009966,GO:0009967,GO:0009987,GO:0010646,GO:0010647,GO:0010941,GO:0010942,GO:0012505,GO:0015075,GO:0015171,GO:0015175,GO:0015179,GO:0015194,GO:0015318,GO:0015711,GO:0015804,GO:0015807,GO:0015825,GO:0015849,GO:0016020,GO:0016021,GO:0016053,GO:0019637,GO:0019752,GO:0019899,GO:0022857,GO:0022889,GO:0023051,GO:0023056,GO:0030148,GO:0030674,GO:0031090,GO:0031224,GO:0031984,GO:0032329,GO:0032501,GO:0032502,GO:0034220,GO:0042175,GO:0042552,GO:0042981,GO:0043065,GO:0043067,GO:0043068,GO:0043085,GO:0043207,GO:0043209,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044085,GO:0044091,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0045087,GO:0046394,GO:0046467,GO:0046486,GO:0046942,GO:0046943,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0048731,GO:0048856,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051179,GO:0051234,GO:0051338,GO:0051347,GO:0051607,GO:0051704,GO:0051707,GO:0055085,GO:0060090,GO:0065007,GO:0065009,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071944,GO:0080134,GO:0080135,GO:0098542,GO:0098588,GO:0098655,GO:0098656,GO:0098805,GO:0098827,GO:0098852,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607,GO:1902235,GO:1902237,GO:1902475,GO:1902531,GO:1902533,GO:1903825,GO:1904217,GO:1904219,GO:1904220,GO:1904222,GO:1905039,GO:1905897,GO:1905898,GO:2001233,GO:2001235,GO:2001242,GO:2001244
EggNOG free text desc.serine transport
EggNOG OGsKOG2592@1,KOG2592@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size679
Cds size249
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5324.12733.1prot_H-paniculata_contig5324.12733.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5324 7994..9982 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930540.4347658-UTR-H-paniculata_contig5324:7637..79931622930540.4347658-UTR-H-paniculata_contig5324:7637..7993Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5324 7638..7993 -
1691481339.7390997-UTR-H-paniculata_contig5324:7637..79931691481339.7390997-UTR-H-paniculata_contig5324:7637..7993Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5324 7638..7993 -
1622930540.4907246-UTR-H-paniculata_contig5324:9982..100561622930540.4907246-UTR-H-paniculata_contig5324:9982..10056Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5324 9983..10056 -
1691481339.7677813-UTR-H-paniculata_contig5324:9982..100561691481339.7677813-UTR-H-paniculata_contig5324:9982..10056Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5324 9983..10056 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930540.4593236-CDS-H-paniculata_contig5324:7993..81731622930540.4593236-CDS-H-paniculata_contig5324:7993..8173Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5324 7994..8173 -
1691481339.7517228-CDS-H-paniculata_contig5324:7993..81731691481339.7517228-CDS-H-paniculata_contig5324:7993..8173Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5324 7994..8173 -
1622930540.4753904-CDS-H-paniculata_contig5324:9913..99821622930540.4753904-CDS-H-paniculata_contig5324:9913..9982Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5324 9914..9982 -
1691481339.7596567-CDS-H-paniculata_contig5324:9913..99821691481339.7596567-CDS-H-paniculata_contig5324:9913..9982Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5324 9914..9982 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5324.12733.1

>prot_H-paniculata_contig5324.12733.1 ID=prot_H-paniculata_contig5324.12733.1|Name=mRNA_H-paniculata_contig5324.12733.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=83bp
MGLALSLLQGGILVAYILFSVVKSILPSSFKVPRAGHTTLAFAVMGTAHV
LGLPFFLDKLDKAHAYGQYVTETVAQIDIRRS*
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mRNA from alignment at H-paniculata_contig5324:7638..10056-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5324.12733.1 ID=mRNA_H-paniculata_contig5324.12733.1|Name=mRNA_H-paniculata_contig5324.12733.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2419bp|location=Sequence derived from alignment at H-paniculata_contig5324:7638..10056- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGAAATAGAGTAGGGATTTGACAAAAGCTGTAGTGAGTGAAGTAAAGCT
ACGGGACGGGGTGAGTTGTGAACTATGGGTCTTGCGCTGTCGCTCCTCCA
AGGAGGCATCCTGGTGGCATATATATTGTTCTCAGTTGTGAAGGTGAGGA
AATCATACAAATGAAACAGCAATCTAGAGATTGATGTTGATGCTGGCTTG
AGGTTGTGCCGCCTTTCTGTCTTTACTTGCCTACCTTGACACTTGCGAAC
TGACTACCTCTGCTCTGTTTCCCACGCACCTTTTGCACGGTACCTGTACA
GTAGTACACCACAGTCACAGGCAACAGCTTCATTTTATTATGTAGTTGAC
TTATTCATGCAGATGATGTGGTGGGGTAGAAAGTGGGTCACTACACTCCA
CGAAGAAGCAACCCAAATACTTTTCCTGTTTGATATTGAAGTTTTTAGTA
ACTACAACTACTAATAGCATCCCTCAGTCATGGGGTAAGTCGGTGCACGA
TGGTAAATACCACACTGTGCTGTCCCATAGGCTCTGTCTGCACTAGAGTC
AGAAAACAGACAATGGTTCGCCCATATGCATCAGAGTGCGAATGGACTCG
TCAGCCTTAGTTCGCCAGGGATTTTTTTTGTCCCCAAAAGACCAGGGCAA
AACCTTTTTTTGATACAGGTATACTGGGAATGTTTTGTCCAGCTTTCGTA
CATCAGTTCTGTTATGATGTTTCCATCCATTTTTACCCAGCCAAGTATTG
GTGATCCCACAGGCAAGTGCTTCAGGGGGGACTGCTCGCAGCTTCGGCGC
GTATCTGCCATCAAACACGCAGACATTATAAGACTAGGGTCAAGATGAGA
TTTTCACCCACTAAAGTTTGCGGGGTACACGGGCTACCGTACCCATTTGG
GCTTTGGTTTGAAGGGGTAGATGAAACCTGGGGCGCGTGTCCAGGACCTT
GATGGGTAATGATGGATCGAATTCCTTACGTTAGTCTTTTATCATCATAT
TGCGTTTAAATTACCTAAAGAAGAAAGAGATGACACTCGCTACAAATCCA
AGTGCCAACCTGATTCGCGCATTTACGTACCAAGGACCAGATGAAGGCAA
CAAACTTTTACATAACATAGAATTTATCAGCCTCTCTGCTCCCTGAACCT
TGAAGCTTGTACGAGAGACGAAACGTTTTTTCGTTGGCTGTTGAAAAAAA
TTGCATAATTAGCCTGACCGTATGCTTTTCGTGTACAATCTGCCACCGTG
CTCCAGCACGAAGCCACCATTTTTGTGGCGGGACTGTCAGGTTATTTTTC
GGACTCGACAGACGAAAGGGCAAAACTTTAAACTTACTTGAAACCATGTC
AAGTTTGTGTTTCCCTATGCGCTCACGGTGCACATCCATCTTTCACAAAA
CGAGGCTGTCTACATACAAGACATTACCCTTTCTGTTACAACCAGCTAGC
TACACGTATAGACAGCTCTACGAGACTTACTCAGTTTAGTATATATGCTA
AATGCTGAAATAAGCCAGACATTTACTCTCTGTGATGATGCCTTCTACGT
TTTATTCACATATGCATGCGCATACAACAAATAAGCTACTGAACATGTGG
CTAAATCCCACGGCTTAATACGGGACCACGTGACGCTCAAAGGACGCGAC
GAGACGGGCAGGACGGATTCCTACCCCATCCCATGCCCTGACATAACGGG
ACGAAGCGAGACCTGTATGTCAATCGAGTATAAAATCCATCGCGTTGTCC
CCGCGCCCTATCCTACCTCTCCCATTCAACATTTGTTCACCTTTGTCCCA
TGCCTTGGTCCCGTGGCAAGCCCTGCTAAATTTCTGTACCACCTCTGCAA
TGTCCGCTTGGCGTTTGGCTTGGTGTTGCGCAGTCGATACTTCCTTCCTC
CTTCAAAGTACCAAGAGCAGGCCATACCACATTGGCGTTCGCTGTCATGG
GGACAGCTCATGTGCTGGGACTACCCTTCTTCCTCGACAAGCTCGACAAA
GCACATGCTTATGGTCAGTATGTGACTGAAACTGTCGCACAAATTGATAT
TCGTCGGTCGTGACTGTACTGTACGCGACTTTTCTCTAACCCTCTTCCCG
CCAAAGGTATTTGTGCAGTAATCAGTATTCAACAGTGCCAACTGCATGCA
GTGCTCACATTTTGCACGTAGAAAATTAAGTTTGCTGCGCGTTATCTGCT
ATAGCTGCCGCTGTCCCCAGTAAGCTTACCGCATCATTACCCTCCAACAT
ACAAGGTACCAGAGCCACGCTCGATGACTCGTGTGCTCGTAATCTAGACT
GTCGATGTTGATGTCTCTGCTGGGAATGTCAAAACGGCCAAGTCACGTAC
AACGGCTATCCCACATAATTCCATCGGTTTATAAGTGATGAACCGAAGGA
AGACCGATACGATTGTATA
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Coding sequence (CDS) from alignment at H-paniculata_contig5324:7638..10056-

>mRNA_H-paniculata_contig5324.12733.1 ID=mRNA_H-paniculata_contig5324.12733.1|Name=mRNA_H-paniculata_contig5324.12733.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=498bp|location=Sequence derived from alignment at H-paniculata_contig5324:7638..10056- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGTCTTGCGCTGTCGCTCCTCCAAGGAGGCATCCTGGTGGCATATAT
ATTGTTCTCAGTTGTGAAGATGGGTCTTGCGCTGTCGCTCCTCCAAGGAG
GCATCCTGGTGGCATATATATTGTTCTCAGTTGTGAAGTCGATACTTCCT
TCCTCCTTCAAAGTACCAAGAGCAGGCCATACCACATTGGCGTTCGCTGT
CATGGGGACAGCTCATGTGCTGGGACTACCCTTCTTCCTCGACAAGCTCG
ACAAAGCACATGCTTATGGTCAGTATGTGACTGAAACTGTCGCACAAATT
GATATTCGTCGGTCGTGATCGATACTTCCTTCCTCCTTCAAAGTACCAAG
AGCAGGCCATACCACATTGGCGTTCGCTGTCATGGGGACAGCTCATGTGC
TGGGACTACCCTTCTTCCTCGACAAGCTCGACAAAGCACATGCTTATGGT
CAGTATGTGACTGAAACTGTCGCACAAATTGATATTCGTCGGTCGTGA
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