mRNA_H-paniculata_contig53222.12730.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig53222.12730.1
Unique NamemRNA_H-paniculata_contig53222.12730.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig53222.12730.1 vs. uniprot
Match: UPI001038BA22 (E3 ubiquitin-protein ligase Nedd-4 isoform X1 n=5 Tax=Ostrinia furnacalis TaxID=93504 RepID=UPI001038BA22)

HSP 1 Score: 54.7 bits (130), Expect = 1.910e-7
Identity = 21/35 (60.00%), Postives = 26/35 (74.29%), Query Frame = 1 
Query:    7 GVDELPPGWESKQAADGRTYYTNHSKKETIWEVSN 111
            G D LPPGWE +Q A+GRTYY NH+++ T WE  N
Sbjct:  255 GGDPLPPGWEERQDANGRTYYVNHNERSTQWERPN 289
[Close]
BLAST of mRNA_H-paniculata_contig53222.12730.1 vs. uniprot
Match: UPI00103EC081 (E3 ubiquitin-protein ligase NEDD4 isoform X6 n=1 Tax=Ostrinia furnacalis TaxID=93504 RepID=UPI00103EC081)

HSP 1 Score: 54.7 bits (130), Expect = 1.910e-7
Identity = 21/35 (60.00%), Postives = 26/35 (74.29%), Query Frame = 1 
Query:    7 GVDELPPGWESKQAADGRTYYTNHSKKETIWEVSN 111
            G D LPPGWE +Q A+GRTYY NH+++ T WE  N
Sbjct:  255 GGDPLPPGWEERQDANGRTYYVNHNERSTQWERPN 289
[Close]
BLAST of mRNA_H-paniculata_contig53222.12730.1 vs. uniprot
Match: A0A3S2LS40_CHISP (Uncharacterized protein n=1 Tax=Chilo suppressalis TaxID=168631 RepID=A0A3S2LS40_CHISP)

HSP 1 Score: 53.5 bits (127), Expect = 4.810e-7
Identity = 21/35 (60.00%), Postives = 25/35 (71.43%), Query Frame = 1 
Query:    7 GVDELPPGWESKQAADGRTYYTNHSKKETIWEVSN 111
            G D LPPGWE +Q A+GRTYY NH ++ T WE  N
Sbjct:  224 GGDPLPPGWEERQDANGRTYYVNHIERSTQWERPN 258
[Close]
BLAST of mRNA_H-paniculata_contig53222.12730.1 vs. uniprot
Match: A0A8D8BL26_CULPI (E3 ubiquitin-protein ligase Nedd-4 (Fragment) n=1 Tax=Culex pipiens TaxID=7175 RepID=A0A8D8BL26_CULPI)

HSP 1 Score: 53.1 bits (126), Expect = 6.520e-7
Identity = 23/41 (56.10%), Postives = 25/41 (60.98%), Query Frame = 1 
Query:   13 DELPPGWESKQAADGRTYYTNHSKKETIWEVSNALSCMPWA 135
            D LPPGWE +Q A GRTYY NH  + T WE   AL   P A
Sbjct:  242 DGLPPGWEERQDAIGRTYYVNHVARTTQWERPTALPAQPGA 282
[Close]
BLAST of mRNA_H-paniculata_contig53222.12730.1 vs. uniprot
Match: A0A8D8BHK0_CULPI (E3 ubiquitin-protein ligase Nedd-4 (Fragment) n=2 Tax=Culex pipiens TaxID=7175 RepID=A0A8D8BHK0_CULPI)

HSP 1 Score: 53.1 bits (126), Expect = 6.670e-7
Identity = 23/41 (56.10%), Postives = 25/41 (60.98%), Query Frame = 1 
Query:   13 DELPPGWESKQAADGRTYYTNHSKKETIWEVSNALSCMPWA 135
            D LPPGWE +Q A GRTYY NH  + T WE   AL   P A
Sbjct:  242 DGLPPGWEERQDAIGRTYYVNHVARTTQWERPTALPAQPGA 282
[Close]
BLAST of mRNA_H-paniculata_contig53222.12730.1 vs. uniprot
Match: B0WYQ6_CULQU (E3 ubiquitin-protein ligase nedd-4 n=1 Tax=Culex quinquefasciatus TaxID=7176 RepID=B0WYQ6_CULQU)

HSP 1 Score: 53.1 bits (126), Expect = 6.670e-7
Identity = 23/41 (56.10%), Postives = 25/41 (60.98%), Query Frame = 1 
Query:   13 DELPPGWESKQAADGRTYYTNHSKKETIWEVSNALSCMPWA 135
            D LPPGWE +Q A GRTYY NH  + T WE   AL   P A
Sbjct:  634 DGLPPGWEERQDAIGRTYYVNHVARTTQWERPTALPAQPGA 674
[Close]
BLAST of mRNA_H-paniculata_contig53222.12730.1 vs. uniprot
Match: A0A8N7VCV9_SPOFR (E3 ubiquitin-protein ligase NEDD4-like isoform X4 n=1 Tax=Spodoptera frugiperda TaxID=7108 RepID=A0A8N7VCV9_SPOFR)

HSP 1 Score: 52.4 bits (124), Expect = 1.250e-6
Identity = 20/32 (62.50%), Postives = 24/32 (75.00%), Query Frame = 1 
Query:    7 GVDELPPGWESKQAADGRTYYTNHSKKETIWE 102
            G D LPPGWE +Q A+GRTYY NH ++ T WE
Sbjct:  230 GGDPLPPGWEERQDANGRTYYVNHIERSTQWE 261
[Close]
BLAST of mRNA_H-paniculata_contig53222.12730.1 vs. uniprot
Match: A0A8D8GGM7_CULPI (HECT-type E3 ubiquitin transferase (Fragment) n=2 Tax=Culex pipiens TaxID=7175 RepID=A0A8D8GGM7_CULPI)

HSP 1 Score: 52.4 bits (124), Expect = 1.250e-6
Identity = 22/41 (53.66%), Postives = 25/41 (60.98%), Query Frame = 1 
Query:   13 DELPPGWESKQAADGRTYYTNHSKKETIWEVSNALSCMPWA 135
            D LPPGWE +Q A GRTYY NH  + T WE   A+   P A
Sbjct:  242 DGLPPGWEERQDAIGRTYYVNHVARTTQWERPTAMPAQPGA 282
[Close]
BLAST of mRNA_H-paniculata_contig53222.12730.1 vs. uniprot
Match: UPI00067C9C47 (E3 ubiquitin-protein ligase Nedd-4 isoform X2 n=2 Tax=Amyelois transitella TaxID=680683 RepID=UPI00067C9C47)

HSP 1 Score: 52.4 bits (124), Expect = 1.250e-6
Identity = 20/32 (62.50%), Postives = 24/32 (75.00%), Query Frame = 1 
Query:    7 GVDELPPGWESKQAADGRTYYTNHSKKETIWE 102
            G D LPPGWE +Q A+GRTYY NH ++ T WE
Sbjct:  224 GGDPLPPGWEERQDANGRTYYVNHIERSTQWE 255
[Close]
BLAST of mRNA_H-paniculata_contig53222.12730.1 vs. uniprot
Match: UPI00067AE8BA (E3 ubiquitin-protein ligase Nedd-4 isoform X1 n=2 Tax=Amyelois transitella TaxID=680683 RepID=UPI00067AE8BA)

HSP 1 Score: 52.4 bits (124), Expect = 1.250e-6
Identity = 20/32 (62.50%), Postives = 24/32 (75.00%), Query Frame = 1 
Query:    7 GVDELPPGWESKQAADGRTYYTNHSKKETIWE 102
            G D LPPGWE +Q A+GRTYY NH ++ T WE
Sbjct:  249 GGDPLPPGWEERQDANGRTYYVNHIERSTQWE 280
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig53222.12730.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001038BA221.910e-760.00E3 ubiquitin-protein ligase Nedd-4 isoform X1 n=5 ... [more]
UPI00103EC0811.910e-760.00E3 ubiquitin-protein ligase NEDD4 isoform X6 n=1 T... [more]
A0A3S2LS40_CHISP4.810e-760.00Uncharacterized protein n=1 Tax=Chilo suppressalis... [more]
A0A8D8BL26_CULPI6.520e-756.10E3 ubiquitin-protein ligase Nedd-4 (Fragment) n=1 ... [more]
A0A8D8BHK0_CULPI6.670e-756.10E3 ubiquitin-protein ligase Nedd-4 (Fragment) n=2 ... [more]
B0WYQ6_CULQU6.670e-756.10E3 ubiquitin-protein ligase nedd-4 n=1 Tax=Culex q... [more]
A0A8N7VCV9_SPOFR1.250e-662.50E3 ubiquitin-protein ligase NEDD4-like isoform X4 ... [more]
A0A8D8GGM7_CULPI1.250e-653.66HECT-type E3 ubiquitin transferase (Fragment) n=2 ... [more]
UPI00067C9C471.250e-662.50E3 ubiquitin-protein ligase Nedd-4 isoform X2 n=2 ... [more]
UPI00067AE8BA1.250e-662.50E3 ubiquitin-protein ligase Nedd-4 isoform X1 n=2 ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig53222contigH-paniculata_contig53222:752..886 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size135
Cds size135
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930540.1156967-CDS-H-paniculata_contig53222:751..8861622930540.1156967-CDS-H-paniculata_contig53222:751..886Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig53222 752..886 -
1691481339.6092367-CDS-H-paniculata_contig53222:751..8861691481339.6092367-CDS-H-paniculata_contig53222:751..886Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig53222 752..886 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig53222.12730.1prot_H-paniculata_contig53222.12730.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig53222 752..886 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig53222.12730.1

>prot_H-paniculata_contig53222.12730.1 ID=prot_H-paniculata_contig53222.12730.1|Name=mRNA_H-paniculata_contig53222.12730.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=45bp
MRGVDELPPGWESKQAADGRTYYTNHSKKETIWEVSNALSCMPWA
back to top

mRNA from alignment at H-paniculata_contig53222:752..886-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig53222.12730.1 ID=mRNA_H-paniculata_contig53222.12730.1|Name=mRNA_H-paniculata_contig53222.12730.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=135bp|location=Sequence derived from alignment at H-paniculata_contig53222:752..886- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGTGGAGTCGACGAGCTGCCTCCCGGATGGGAATCGAAGCAAGCGGC
CGACGGCCGCACGTACTACACTAACCACTCCAAGAAGGAGACCATCTGGG
AGGTGAGTAATGCATTATCGTGTATGCCTTGGGCC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig53222:752..886-

>mRNA_H-paniculata_contig53222.12730.1 ID=mRNA_H-paniculata_contig53222.12730.1|Name=mRNA_H-paniculata_contig53222.12730.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=270bp|location=Sequence derived from alignment at H-paniculata_contig53222:752..886- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGTGGAGTCGACGAGCTGCCTCCCGGATGGGAATCGAAGCAAGCGGC
CGACGGCCGCACGTACTACACTAACCACTCCAAGAAGGAGACCATCTGGG
AGGTGAGTAATGCATTATCGTGTATGCCTTGGGCCATGCGTGGAGTCGAC
GAGCTGCCTCCCGGATGGGAATCGAAGCAAGCGGCCGACGGCCGCACGTA
CTACACTAACCACTCCAAGAAGGAGACCATCTGGGAGGTGAGTAATGCAT
TATCGTGTATGCCTTGGGCC
back to top