prot_H-paniculata_contig5312.12719.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig5312.12719.1
Unique Nameprot_H-paniculata_contig5312.12719.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length225
Homology
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BLAST of mRNA_H-paniculata_contig5312.12719.1 vs. uniprot
Match: A0A6H5KI88_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KI88_9PHAE)

HSP 1 Score: 55.1 bits (131), Expect = 1.450e-6
Identity = 34/87 (39.08%), Postives = 43/87 (49.43%), Query Frame = 0 
Query:    9 VLLLGVS-----SGANACL-IKDAQYSCTPGSTKIDLSGCGITDTNIDDLTDCFIFAGQGLVQEVILDDNELTGLPYDFFDGLRALE 89
            ++LLG+S     S  N CL   DA          +DLS CGITD + DDL  C   AG   +  + L +NELT LP   F  L  L+
Sbjct:    7 IILLGLSTLLNTSAVNVCLDTTDAGNCQIEAGETLDLSDCGITDADFDDLASCLEAAGPEAITTLFLYENELTTLPEGIFGSLTGLQ 93
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5312.12719.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KI88_9PHAE1.450e-639.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003591Leucine-rich repeat, typical subtypeSMARTSM00369LRR_typ_2coord: 133..156
e-value: 0.13
score: 21.4
coord: 85..108
e-value: 0.017
score: 24.3
coord: 110..132
e-value: 8.4
score: 13.9
IPR001611Leucine-rich repeatPFAMPF13855LRR_8coord: 111..169
e-value: 1.9E-12
score: 46.8
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 19..184
e-value: 1.7E-28
score: 100.9
NoneNo IPR availablePANTHERPTHR45930FAMILY NOT NAMEDcoord: 57..147
NoneNo IPR availablePANTHERPTHR45930FAMILY NOT NAMEDcoord: 70..173
NoneNo IPR availablePANTHERPTHR45930:SF4coord: 70..173
coord: 57..147
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..3
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 21..224
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..20
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 16..20
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 4..15
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..20
score: 0.852
NoneNo IPR availableSUPERFAMILY52058L domain-likecoord: 29..176

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5312contigH-paniculata_contig5312:5160..11598 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5312.12719.1mRNA_H-paniculata_contig5312.12719.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig5312 5052..12879 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig5312.12719.1 ID=prot_H-paniculata_contig5312.12719.1|Name=mRNA_H-paniculata_contig5312.12719.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=225bp
MMRVACPLVLLLGVSSGANACLIKDAQYSCTPGSTKIDLSGCGITDTNID
DLTDCFIFAGQGLVQEVILDDNELTGLPYDFFDGLRALERVDLSANELVT
LPQELFASNANLKELVMFNNKINALPPGVFRDLVDLELLELEDNELTTLP
FGLFSDLDSLQLLTLFGNDDLQCLPTLSDSVELVLPTDFDPTDLSNICGC
PAEGVDCFEGLFCFPGADGWSCRR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003591Leu-rich_rpt_typical-subtyp
IPR001611Leu-rich_rpt
IPR032675LRR_dom_sf