mRNA_H-paniculata_contig53099.12715.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig53099.12715.1
Unique NamemRNA_H-paniculata_contig53099.12715.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig53099.12715.1 vs. uniprot
Match: A0A6H5J9R9_9PHAE (Pribosyltran_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9R9_9PHAE)

HSP 1 Score: 127 bits (318), Expect = 4.130e-33
Identity = 61/63 (96.83%), Postives = 62/63 (98.41%), Query Frame = 1 
Query:    1 DVYIVQSGQKPVNDNLVELLLMVSTMQRASAKRVTVVIPYFPYKHHRRSVPVSADLHSRFLWS 189
            DVYIVQSGQKPVNDNL+ELLLMVSTMQRASAKRVT VIPYFPYKHHRRSVPVSADLHSRFLWS
Sbjct:  192 DVYIVQSGQKPVNDNLIELLLMVSTMQRASAKRVTAVIPYFPYKHHRRSVPVSADLHSRFLWS 254
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BLAST of mRNA_H-paniculata_contig53099.12715.1 vs. uniprot
Match: A0A835Z4X7_9STRA (N-terminal domain of ribose phosphate pyrophosphokinase-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4X7_9STRA)

HSP 1 Score: 105 bits (261), Expect = 2.320e-25
Identity = 49/63 (77.78%), Postives = 58/63 (92.06%), Query Frame = 1 
Query:    1 DVYIVQSGQKPVNDNLVELLLMVSTMQRASAKRVTVVIPYFPYKHHRRSVPVSADLHSRFLWS 189
            DVY++QSGQ+PVND+L+ELLL+VST+QRASAKRVT VIPYFPYKHHRR VP+S  L+SRFL S
Sbjct:  103 DVYVMQSGQRPVNDHLMELLLLVSTVQRASAKRVTAVIPYFPYKHHRRGVPISTGLNSRFLLS 165
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BLAST of mRNA_H-paniculata_contig53099.12715.1 vs. uniprot
Match: A0A8K1CH52_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CH52_PYTOL)

HSP 1 Score: 94.4 bits (233), Expect = 2.930e-21
Identity = 44/63 (69.84%), Postives = 55/63 (87.30%), Query Frame = 1 
Query:    1 DVYIVQSGQKPVNDNLVELLLMVSTMQRASAKRVTVVIPYFPYKHHRRSVPVSADLHSRFLWS 189
            DVY+VQS   PVNDN++ELLLMVSTM+RASAKRVTVVIPY+ YKHHRR+ PV+  ++S+F+ S
Sbjct:  137 DVYLVQSLASPVNDNIIELLLMVSTMRRASAKRVTVVIPYYAYKHHRRASPVATSMNSKFIHS 199
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BLAST of mRNA_H-paniculata_contig53099.12715.1 vs. uniprot
Match: A0A024GFD0_9STRA (Pribosyltran_N domain-containing protein n=2 Tax=Albugo TaxID=65356 RepID=A0A024GFD0_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 6.520e-21
Identity = 44/63 (69.84%), Postives = 53/63 (84.13%), Query Frame = 1 
Query:    1 DVYIVQSGQKPVNDNLVELLLMVSTMQRASAKRVTVVIPYFPYKHHRRSVPVSADLHSRFLWS 189
            DVY+VQS   PVN+N++ELLLMVSTM+RASAKRV+VVIPY+ YKHHRR  P S  LHS+F+ S
Sbjct:  166 DVYLVQSLSAPVNENIIELLLMVSTMRRASAKRVSVVIPYYAYKHHRRMSPASTSLHSKFIQS 228
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BLAST of mRNA_H-paniculata_contig53099.12715.1 vs. uniprot
Match: A0A2P4XBW1_9STRA (Phosphoribosyldiphosphate synthetase (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XBW1_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 1.250e-20
Identity = 42/63 (66.67%), Postives = 54/63 (85.71%), Query Frame = 1 
Query:    1 DVYIVQSGQKPVNDNLVELLLMVSTMQRASAKRVTVVIPYFPYKHHRRSVPVSADLHSRFLWS 189
            DVY+VQS   PVNDN++ELLLMVSTM+RASAK+VTVV+PY+ YKHHRR+ P +  L+S+F+ S
Sbjct:  127 DVYLVQSLASPVNDNIIELLLMVSTMRRASAKKVTVVLPYYAYKHHRRANPAATSLNSKFIQS 189
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BLAST of mRNA_H-paniculata_contig53099.12715.1 vs. uniprot
Match: H3GCI0_PHYRM (Pribosyltran_N domain-containing protein n=20 Tax=Peronosporaceae TaxID=4777 RepID=H3GCI0_PHYRM)

HSP 1 Score: 91.3 bits (225), Expect = 3.760e-20
Identity = 42/63 (66.67%), Postives = 54/63 (85.71%), Query Frame = 1 
Query:    1 DVYIVQSGQKPVNDNLVELLLMVSTMQRASAKRVTVVIPYFPYKHHRRSVPVSADLHSRFLWS 189
            DVY+VQS   PVNDN++ELLLMVSTM+RASAK+VTVV+PY+ YKHHRR+ P +  L+S+F+ S
Sbjct:  130 DVYLVQSLASPVNDNIIELLLMVSTMRRASAKKVTVVLPYYAYKHHRRANPAATSLNSKFIQS 192
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BLAST of mRNA_H-paniculata_contig53099.12715.1 vs. uniprot
Match: A0A5D6YPY6_9STRA (Pribosyltran_N domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YPY6_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 5.160e-20
Identity = 42/63 (66.67%), Postives = 54/63 (85.71%), Query Frame = 1 
Query:    1 DVYIVQSGQKPVNDNLVELLLMVSTMQRASAKRVTVVIPYFPYKHHRRSVPVSADLHSRFLWS 189
            DVY+VQS   PVN+N++ELLLMVSTM+RASAKRVTVV+PY+ YKHHRR  P+S  ++S+F+ S
Sbjct:  130 DVYLVQSLATPVNENVIELLLMVSTMRRASAKRVTVVVPYYAYKHHRRGNPMSTSMNSKFIQS 192
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BLAST of mRNA_H-paniculata_contig53099.12715.1 vs. uniprot
Match: A0A2D4BIU7_PYTIN (Heat shock protein 75 kDa, mitochondrial n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BIU7_PYTIN)

HSP 1 Score: 90.5 bits (223), Expect = 1.030e-19
Identity = 42/63 (66.67%), Postives = 54/63 (85.71%), Query Frame = 1 
Query:    1 DVYIVQSGQKPVNDNLVELLLMVSTMQRASAKRVTVVIPYFPYKHHRRSVPVSADLHSRFLWS 189
            DVY+VQS   PVNDN++ELLLMVSTM+RASAKRV+VVIPY+ YKHHRR+ P +  ++S+F+ S
Sbjct:  749 DVYLVQSLASPVNDNIIELLLMVSTMRRASAKRVSVVIPYYAYKHHRRASPETTSMNSKFIHS 811
[Close]
BLAST of mRNA_H-paniculata_contig53099.12715.1 vs. uniprot
Match: A0A396ZYB3_9STRA (Pribosyltran_N domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A396ZYB3_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 1.090e-19
Identity = 43/63 (68.25%), Postives = 52/63 (82.54%), Query Frame = 1 
Query:    1 DVYIVQSGQKPVNDNLVELLLMVSTMQRASAKRVTVVIPYFPYKHHRRSVPVSADLHSRFLWS 189
            DVYIVQS   PVNDN++ELLLMVSTM+RASAK+VT VIPY+ YKHHRR  P +  L+S+F+ S
Sbjct:  126 DVYIVQSLGTPVNDNVIELLLMVSTMRRASAKKVTTVIPYYAYKHHRRGNPSATSLNSKFIHS 188
[Close]
BLAST of mRNA_H-paniculata_contig53099.12715.1 vs. uniprot
Match: A0A067C1X5_SAPPC (Pribosyltran_N domain-containing protein n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067C1X5_SAPPC)

HSP 1 Score: 89.4 bits (220), Expect = 1.820e-19
Identity = 42/63 (66.67%), Postives = 53/63 (84.13%), Query Frame = 1 
Query:    1 DVYIVQSGQKPVNDNLVELLLMVSTMQRASAKRVTVVIPYFPYKHHRRSVPVSADLHSRFLWS 189
            DVY+VQS  +PVNDN++ELLLMVSTM+RASAK+VT VIPY+ YKHHRR  P +  L+S+F+ S
Sbjct:  125 DVYLVQSLAQPVNDNVIELLLMVSTMRRASAKKVTAVIPYYAYKHHRRGSPSATSLNSKFVHS 187
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig53099.12715.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5J9R9_9PHAE4.130e-3396.83Pribosyltran_N domain-containing protein n=1 Tax=E... [more]
A0A835Z4X7_9STRA2.320e-2577.78N-terminal domain of ribose phosphate pyrophosphok... [more]
A0A8K1CH52_PYTOL2.930e-2169.84Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A024GFD0_9STRA6.520e-2169.84Pribosyltran_N domain-containing protein n=2 Tax=A... [more]
A0A2P4XBW1_9STRA1.250e-2066.67Phosphoribosyldiphosphate synthetase (Fragment) n=... [more]
H3GCI0_PHYRM3.760e-2066.67Pribosyltran_N domain-containing protein n=20 Tax=... [more]
A0A5D6YPY6_9STRA5.160e-2066.67Pribosyltran_N domain-containing protein n=1 Tax=P... [more]
A0A2D4BIU7_PYTIN1.030e-1966.67Heat shock protein 75 kDa, mitochondrial n=2 Tax=P... [more]
A0A396ZYB3_9STRA1.090e-1968.25Pribosyltran_N domain-containing protein n=1 Tax=A... [more]
A0A067C1X5_SAPPC1.820e-1966.67Pribosyltran_N domain-containing protein n=4 Tax=S... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig53099contigH-paniculata_contig53099:204..1102 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score92.8
Seed ortholog evalue6.1e-17
Seed eggNOG ortholog653948.CCA15271
KEGG rclassRC00002,RC00078
KEGG koko:K00948,ko:K14638
KEGG TC2.A.17.3
KEGG ReactionR01049
KEGG Pathwayko00030,ko00230,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00030,map00230,map01100,map01110,map01120,map01130,map01200,map01230
KEGG ModuleM00005
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009536,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464
EggNOG free text desc.ribose phosphate diphosphokinase activity
EggNOG OGsCOG0462@1,KOG1448@2759
EC2.7.6.1
COG Functional cat.EF
BiGG ReactioniRC1080.CRv4_Au5_s8_g15040_t1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko02000
Exons2
Model size189
Cds size189
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930538.0046058-CDS-H-paniculata_contig53099:203..2761622930538.0046058-CDS-H-paniculata_contig53099:203..276Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig53099 204..276 -
1691481338.6613038-CDS-H-paniculata_contig53099:203..2761691481338.6613038-CDS-H-paniculata_contig53099:203..276Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig53099 204..276 -
1622930538.0186985-CDS-H-paniculata_contig53099:986..11021622930538.0186985-CDS-H-paniculata_contig53099:986..1102Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig53099 987..1102 -
1691481338.6755135-CDS-H-paniculata_contig53099:986..11021691481338.6755135-CDS-H-paniculata_contig53099:986..1102Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig53099 987..1102 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig53099.12715.1prot_H-paniculata_contig53099.12715.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig53099 204..1102 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig53099.12715.1

>prot_H-paniculata_contig53099.12715.1 ID=prot_H-paniculata_contig53099.12715.1|Name=mRNA_H-paniculata_contig53099.12715.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=63bp
DVYIVQSGQKPVNDNLVELLLMVSTMQRASAKRVTVVIPYFPYKHHRRSV
PVSADLHSRFLWS
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mRNA from alignment at H-paniculata_contig53099:204..1102-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig53099.12715.1 ID=mRNA_H-paniculata_contig53099.12715.1|Name=mRNA_H-paniculata_contig53099.12715.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=899bp|location=Sequence derived from alignment at H-paniculata_contig53099:204..1102- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACGTGTACATTGTTCAGAGTGGCCAGAAGCCTGTCAATGACAATCTGGT
GGAGTTGCTGCTCATGGTTTCTACGATGCAGCGTGCTTCTGCCAAGCGCG
TCACGGTCGTGATCCCGTGAGTGTAATTTTTAGTTAGTTTTGTTTAGTTT
TGTTTATTTGTTCTTCATTAATACCGTCTTTATCAGTCTCTCCGTGCCTG
CTGTCTTTGAAAAACAAAAATAGAGCCGTCTTCTCGAGGCCTCGTCGTCA
CTAGTTTGAAAGCGAAGGCATGCGAACCATGAGTACCCCCCCTCCCCCCT
CCCTTATTTGAACGGAGATTTGAGGTTATCGTCACTACCCTAGTGATCTT
TAATTTACTGATAAGTGTAAAAAATTGAATTTTAAATTTCAAAATCAGCA
GTATAAATCAACATTGAACCCTAACCCCCCCCCCCCCCACTTCTCATATT
TGTCGTTTGGTTATTGGTGCTAATAATTGTACTCGTTATTATCCATAGAT
TTGATATATATATTTTACAAGCTACATAGCCTCAGCGTAGCACGAAGATA
CATGTAAGAAATTCGCGAATTAATAGACAAGGTGAATCGGTAAATTTACC
ACCCCTAGTTGGTCCAGTTTGTGGAGAATAACCCAAGTAATCCAGCAAGT
TGAAGATGCTAAGCACCTGTACTTCGATGTAGTTTTACGGCTATTATCAT
GTTTTCTAGAGTACGGTACTTTTATGCATATCTTTTGGTACTTTTGACTT
GCTCTTTACTACCACTATCACCACCTCCACCTCCCGTTCTCCTTGCTCCC
GCCCCCGTCTCCATTTCCATGTGCAGATATTTTCCGTATAAGCACCACCG
GAGGTCCGTCCCCGTCAGCGCTGATCTTCACTCTCGTTTCTTATGGAGC
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Coding sequence (CDS) from alignment at H-paniculata_contig53099:204..1102-

>mRNA_H-paniculata_contig53099.12715.1 ID=mRNA_H-paniculata_contig53099.12715.1|Name=mRNA_H-paniculata_contig53099.12715.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=378bp|location=Sequence derived from alignment at H-paniculata_contig53099:204..1102- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACGTGTACATTGTTCAGAGTGGCCAGAAGCCTGTCAATGACAATCTGGT
GGAGTTGCTGCTCATGGTTTCTACGATGCAGCGTGCTTCTGCCAAGCGCG
TCACGGTCGTGATCCCGACGTGTACATTGTTCAGAGTGGCCAGAAGCCTG
TCAATGACAATCTGGTGGAGTTGCTGCTCATGGTTTCTACGATGCAGCGT
GCTTCTGCCAAGCGCGTCACGGTCGTGATCCCATATTTTCCGTATAAGCA
CCACCGGAGGTCCGTCCCCGTCAGCGCTGATCTTCACTCTCGTTTCTTAT
GGAGCATATTTTCCGTATAAGCACCACCGGAGGTCCGTCCCCGTCAGCGC
TGATCTTCACTCTCGTTTCTTATGGAGC
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