mRNA_H-paniculata_contig5309.12714.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5309.12714.1
Unique NamemRNA_H-paniculata_contig5309.12714.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig5309.12714.1 vs. uniprot
Match: A0A6H5KTF5_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTF5_9PHAE)

HSP 1 Score: 140 bits (352), Expect = 1.380e-33
Identity = 88/121 (72.73%), Postives = 97/121 (80.17%), Query Frame = 3 
Query:  582 RAVLLTFRDIVQEWRRGTLMRPRSGVAGSTTGGDGTXXXXXXXXXXXXXXAPGQELDPAGVARTVRTLFERLGATYIKLGQFIASSPTLFPSEYVQEFQKCLDATEPVPYSKILSIVKDEV 944
            RAVLLT  D+V++WR G L+RP+    G        XXXXXXXXXXXXX   GQELDPAG AR +R LFERLGATYIKLGQFIASSPTLFP EYV EFQKCLDATEPVPYSKIL+IVK+E+
Sbjct:  145 RAVLLTLTDLVRDWREGKLLRPKRENGGXXXX---XXXXXXXXXXXXXXALSGQELDPAGAARALRLLFERLGATYIKLGQFIASSPTLFPPEYVLEFQKCLDATEPVPYSKILAIVKEEL 262
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BLAST of mRNA_H-paniculata_contig5309.12714.1 vs. uniprot
Match: A0A7S4RD62_9DINO (Hypothetical protein n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4RD62_9DINO)

HSP 1 Score: 97.8 bits (242), Expect = 6.280e-19
Identity = 45/70 (64.29%), Postives = 60/70 (85.71%), Query Frame = 3 
Query:  735 PGQELDPAGVARTVRTLFERLGATYIKLGQFIASSPTLFPSEYVQEFQKCLDATEPVPYSKILSIVKDEV 944
            P QEL+ A  AR +R LFERLGATY+KLGQFIASSPT+FP++YV+EFQ+CLD+T  VP+S+I  I++D++
Sbjct:  138 PPQELNEAFAARLLRRLFERLGATYVKLGQFIASSPTVFPADYVREFQQCLDSTNTVPFSEIRKIIEDDL 207
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BLAST of mRNA_H-paniculata_contig5309.12714.1 vs. uniprot
Match: A0A7J7QGJ7_9CHLO (ABC1 family-domain-containing protein n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7QGJ7_9CHLO)

HSP 1 Score: 97.4 bits (241), Expect = 6.740e-19
Identity = 48/73 (65.75%), Postives = 59/73 (80.82%), Query Frame = 3 
Query:  738 GQELDPAGVARTVRTLFERLGATYIKLGQFIASSPTLFPSEYVQEFQKCLDATEPVPYSKILSIVKDEVRRRP 956
            G +LDP  V   +R LFERLGATYIKLGQFIASSP+LFP EYV EFQKCLD T+PVP+S I  I++ E++++P
Sbjct:   74 GGQLDPPQVV--LRKLFERLGATYIKLGQFIASSPSLFPEEYVLEFQKCLDRTDPVPFSSIQRILRQELKQQP 144
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BLAST of mRNA_H-paniculata_contig5309.12714.1 vs. uniprot
Match: A0A7S0AMY5_9DINO (Hypothetical protein n=1 Tax=Pyrodinium bahamense TaxID=73915 RepID=A0A7S0AMY5_9DINO)

HSP 1 Score: 96.3 bits (238), Expect = 2.240e-18
Identity = 44/70 (62.86%), Postives = 60/70 (85.71%), Query Frame = 3 
Query:  735 PGQELDPAGVARTVRTLFERLGATYIKLGQFIASSPTLFPSEYVQEFQKCLDATEPVPYSKILSIVKDEV 944
            P +EL+ A  AR +R LFERLGATY+KLGQFIASSPT+FP++YV+EFQKCLD+T  VP+S++  I++D++
Sbjct:  162 PPEELNEAFFARLLRRLFERLGATYVKLGQFIASSPTVFPADYVREFQKCLDSTGTVPFSEVRRIIEDDL 231
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BLAST of mRNA_H-paniculata_contig5309.12714.1 vs. uniprot
Match: A0A7S3P745_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3P745_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 2.780e-18
Identity = 44/57 (77.19%), Postives = 52/57 (91.23%), Query Frame = 3 
Query:  774 VRTLFERLGATYIKLGQFIASSPTLFPSEYVQEFQKCLDATEPVPYSKILSIVKDEV 944
            +RTLFERLGATYIKLGQFIASSPTLFP EYV+EFQKCLD TEP+P+S I  +++DE+
Sbjct:  133 LRTLFERLGATYIKLGQFIASSPTLFPKEYVKEFQKCLDQTEPLPWSTIRRVIEDEL 189
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BLAST of mRNA_H-paniculata_contig5309.12714.1 vs. uniprot
Match: A0A383VR21_TETOB (Protein kinase domain-containing protein n=2 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383VR21_TETOB)

HSP 1 Score: 95.9 bits (237), Expect = 2.870e-18
Identity = 48/73 (65.75%), Postives = 58/73 (79.45%), Query Frame = 3 
Query:  738 GQELDPAGVARTVRTLFERLGATYIKLGQFIASSPTLFPSEYVQEFQKCLDATEPVPYSKILSIVKDEVRRRP 956
            G  LDP  V   +R LFERLGATYIKLGQFIASSP+LFP EYV EFQKCLD T+PVP++ I  I+K E++++P
Sbjct:  107 GGRLDPPQVV--LRKLFERLGATYIKLGQFIASSPSLFPEEYVLEFQKCLDRTDPVPFATIQRILKQELQQQP 177
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BLAST of mRNA_H-paniculata_contig5309.12714.1 vs. uniprot
Match: E1Z325_CHLVA (Protein kinase domain-containing protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1Z325_CHLVA)

HSP 1 Score: 95.5 bits (236), Expect = 2.880e-18
Identity = 47/65 (72.31%), Postives = 52/65 (80.00%), Query Frame = 3 
Query:  753 PAGVARTVRTLFERLGATYIKLGQFIASSPTLFPSEYVQEFQKCLDATEPVPYSKILSIVKDEVR 947
            P G A  +R LFERLGATYIKLGQFIASSPTLFP EYV EFQKCLD+TEPVP+  I   V+ E+R
Sbjct:   59 PEGPAIVLRKLFERLGATYIKLGQFIASSPTLFPEEYVLEFQKCLDSTEPVPFEVIRRTVESELR 123
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BLAST of mRNA_H-paniculata_contig5309.12714.1 vs. uniprot
Match: L1JV62_GUITC (ABC1 domain-containing protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JV62_GUITC)

HSP 1 Score: 93.2 bits (230), Expect = 1.200e-17
Identity = 41/59 (69.49%), Postives = 54/59 (91.53%), Query Frame = 3 
Query:  771 TVRTLFERLGATYIKLGQFIASSPTLFPSEYVQEFQKCLDATEPVPYSKILSIVKDEVR 947
            T+R LFE LGATY+KLGQF+ASSPTLFP+EYV+EFQKCLD+TE VP+S+I  I++D+++
Sbjct:    8 TIRRLFELLGATYVKLGQFVASSPTLFPAEYVKEFQKCLDSTESVPFSQIKRIIEDDLK 66
[Close]
BLAST of mRNA_H-paniculata_contig5309.12714.1 vs. uniprot
Match: A0A835YPW4_9STRA (ABC1 family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPW4_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 1.210e-17
Identity = 41/68 (60.29%), Postives = 56/68 (82.35%), Query Frame = 3 
Query:  741 QELDPAGVARTVRTLFERLGATYIKLGQFIASSPTLFPSEYVQEFQKCLDATEPVPYSKILSIVKDEV 944
            ++L  A  A+ +R LFER+GATY+KLGQFIASSPTLFP E+V E QKCLD+TEP+P+S ++ I++ E+
Sbjct:  112 KDLSTADTAKYLRLLFERMGATYVKLGQFIASSPTLFPGEFVMEMQKCLDSTEPIPFSTVIRIIRREL 179
[Close]
BLAST of mRNA_H-paniculata_contig5309.12714.1 vs. uniprot
Match: A0A7S4N0D6_GUITH (Hypothetical protein n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4N0D6_GUITH)

HSP 1 Score: 94.0 bits (232), Expect = 1.260e-17
Identity = 45/72 (62.50%), Postives = 58/72 (80.56%), Query Frame = 3 
Query:  732 APGQELDPAGVARTVRTLFERLGATYIKLGQFIASSPTLFPSEYVQEFQKCLDATEPVPYSKILSIVKDEVR 947
            AP  E   A    T+R LFE LGATY+KLGQF+ASSPTLFP+EYV+EFQKCLD+TE VP+S+I  I++D+++
Sbjct:  128 APTTEDVIAQAPATIRRLFELLGATYVKLGQFVASSPTLFPAEYVKEFQKCLDSTESVPFSQIKRIIEDDLK 199
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5309.12714.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KTF5_9PHAE1.380e-3372.73Protein kinase domain-containing protein n=1 Tax=E... [more]
A0A7S4RD62_9DINO6.280e-1964.29Hypothetical protein n=1 Tax=Alexandrium monilatum... [more]
A0A7J7QGJ7_9CHLO6.740e-1965.75ABC1 family-domain-containing protein n=1 Tax=Scen... [more]
A0A7S0AMY5_9DINO2.240e-1862.86Hypothetical protein n=1 Tax=Pyrodinium bahamense ... [more]
A0A7S3P745_9STRA2.780e-1877.19Hypothetical protein (Fragment) n=1 Tax=Amphora co... [more]
A0A383VR21_TETOB2.870e-1865.75Protein kinase domain-containing protein n=2 Tax=T... [more]
E1Z325_CHLVA2.880e-1872.31Protein kinase domain-containing protein n=1 Tax=C... [more]
L1JV62_GUITC1.200e-1769.49ABC1 domain-containing protein n=1 Tax=Guillardia ... [more]
A0A835YPW4_9STRA1.210e-1760.29ABC1 family-domain-containing protein n=1 Tax=Trib... [more]
A0A7S4N0D6_GUITH1.260e-1762.50Hypothetical protein n=1 Tax=Guillardia theta TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5309contigH-paniculata_contig5309:11480..14083 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score95.9
Seed ortholog evalue1.3e-17
Seed eggNOG ortholog554065.XP_005851867.1
KEGG koko:K08869
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0010287,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464
EggNOG free text desc.ABC1 family
EggNOG OGs34H8A@3041,37IRM@33090,COG0661@1,KOG1235@2759
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-06_004740.1
COG Functional cat.S
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01001
Exons3
Model size974
Cds size336
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5309.12714.1prot_H-paniculata_contig5309.12714.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5309 12118..14083 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930537.8965719-UTR-H-paniculata_contig5309:11479..121171622930537.8965719-UTR-H-paniculata_contig5309:11479..12117Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5309 11480..12117 +
1691481338.6108937-UTR-H-paniculata_contig5309:11479..121171691481338.6108937-UTR-H-paniculata_contig5309:11479..12117Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5309 11480..12117 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930537.9150326-CDS-H-paniculata_contig5309:12117..122731622930537.9150326-CDS-H-paniculata_contig5309:12117..12273Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5309 12118..12273 +
1691481338.6268475-CDS-H-paniculata_contig5309:12117..122731691481338.6268475-CDS-H-paniculata_contig5309:12117..12273Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5309 12118..12273 +
1622930537.9410164-CDS-H-paniculata_contig5309:13006..130711622930537.9410164-CDS-H-paniculata_contig5309:13006..13071Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5309 13007..13071 +
1691481338.6395557-CDS-H-paniculata_contig5309:13006..130711691481338.6395557-CDS-H-paniculata_contig5309:13006..13071Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5309 13007..13071 +
1622930537.9585211-CDS-H-paniculata_contig5309:13968..140831622930537.9585211-CDS-H-paniculata_contig5309:13968..14083Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5309 13969..14083 +
1691481338.6506112-CDS-H-paniculata_contig5309:13968..140831691481338.6506112-CDS-H-paniculata_contig5309:13968..14083Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5309 13969..14083 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5309.12714.1

>prot_H-paniculata_contig5309.12714.1 ID=prot_H-paniculata_contig5309.12714.1|Name=mRNA_H-paniculata_contig5309.12714.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=112bp
MRPRSGVAGSTTGGDGTATAGAAGTATAAAAAPGQELDPAGVARTVRTLF
ERLGATYIKLGQFIASSPTLFPSEYVQEFQKCLDATEPVPYSKILSIVKD
EVRRRPRCCMT*
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mRNA from alignment at H-paniculata_contig5309:11480..14083+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5309.12714.1 ID=mRNA_H-paniculata_contig5309.12714.1|Name=mRNA_H-paniculata_contig5309.12714.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2604bp|location=Sequence derived from alignment at H-paniculata_contig5309:11480..14083+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGCAAAATTAGGTGATTTTAAAGCGCCCAAAATCTTTGCAGTTCAACTAA
CAAAATTAAATCATTTTCATGGGTTATCCTAGAGGTGAAATAAAAAAAAA
TGCATATAACCTAATATAATGGTTTTAAACCCCCCAAACAAAATCTAAAA
TTATATCATTAGATTATCCCCGTGACTTTCCTGAGAACGCCTCGGAGCGA
TTTGCTGTTTTGCACAAAAGTATTGTTGCTCCCCTGCAAATATCTGAACT
TATTTAGTCCTTGCGCCGTTGCTCGTAAATGTTGCTGAGGAAGAACGTCG
TCCGTCGGCCCCTGCGTGCTAAGAGTGTTATTGTTGAATCCCATTTTGCT
GCCGGCCCAGGTATGATTTTTGGCCTGGCGGAACACTGATTTCACGATCG
CCCCTGGAACTCGTGATGACGTCACATTTTCCAAACATTGCGCCGTGGCC
GGTCATGACGCCCCGTGCAAAACAATTCATGGCAAACAGAAATGAACTCG
CCCCGGGGGCGTGATCAGAGGGCTTTACGGTAGCTTGGAATATTTACCTC
CTGAACATGCCCCCCGAGCACGCACTTGCACAGGGCCGTTCTCCTGACTT
TCCGCGACATAGTGCAAGAATGGAGGCGAGGCACGTTGATGCGTCCACGG
AGTGGGGTAGCAGGTAGTACGACAGGTGGCGATGGTACCGCTACTGCGGG
TGCTGCAGGTACCGCAACGGCGGCGGCGGCGGCACCGGGCCAAGAGCTTG
ACCCCGCCGGAGTCGCGCGTACTGTGCGCACACTATTTGAACGGGTGAGG
AAAGGACAAAGCACGATAATGACTTGCGACCTCCGGTTTCATCTCAACTA
GTAATAATAGTATTTTGTAGCCTTATTGTAGAGTCCATCTGCCCAACCGA
CCTAATCCAAAAAGCAGGGCGTGCTGTGGGTGTACGGTATATTGCTCTGT
TTGTTTTCCAGGGGGGTCGTTTTGATTTCCGAGATTTTGTATTGGCGATC
GCCCACCGCGACCCCATTCACCGTAATCACGGGTACTCGCACCCCACGAG
GGTTGGCTATCCGTTTCCAGCAATTGGCTGCATTATCCAGGAATCGTGAC
TTTTTCCCGGTACCAACGAGAGTGTCACGTCATGCTTTCTGGTGAACAGC
TACCTAAGAGCAAAGTTTTCTCTTTCGGTTCCTTCCCCCCCCCGCGTTCG
TTACGTCGCACATTGGGTAGCACCGGATCGGCATAACATGGCGGTACCAG
GACTCAACGGGAGAACCGAGCATTATGGTGTCGATTAGAAGAAACGAAAA
AGAGGGCATGGGGTGAATTAGATAGGGATCCTTCAGCCCATGACTAAATG
ATATGTGTGGATCTTCATAAACCCGTTAAAATGTTCCAAAATCCTTTCAA
GATTCATATCATATCATACATTCTGCACTACCGTGACAACAATTTGCATT
GTGTGACCATGTCCAATCGGACCGCTTCCCCGCCCCCCTTGCCACGTTGT
TGCCGCCCTTTCGCGGTTTGACTTCAGCTGGGAGCGACCTACATCAAGCT
GGGACAGTTCATCGCTTCCTCGCCGACCCTGTTTCCTTCTGAGTGAGTTG
TGCTCGTTGTTGATCTCCTTGCGGATAACTTCTGGTTCGAGTTGCGTGTT
AAGGCCACTGAGAGACAGAATGAACACTAGAAGAGTATCGCCATAAGTGT
TGCCCCGTGGCTGAGCAGTACGCAGAAGGTACCAAAAGACGTACGTGGAT
GGGCAGGCCAAATCCTGTCAGTGGCGTTTTTAATTGTGTCTCGAAATTCC
TGTGTCAGGCAGCCGTGGCCGTGCGGACATATTTGTCGTCCTCGTTATCA
TTGACCCACTCGTGCGTCAGTAGTTCATGTCAGGCCTGCTCTAGTAGTCA
AATGCTGGATTGGTGATACTCTTTACTGAGCTGTTCTCTTTTGTAGCCAG
CACCATGTGCGGTGTTCAGTTCAGGCCTGCGTTGGTTATCAACTGTTGAT
GATATTTGTCTGTTGCCCTTTTCTTGTATTTGGTAAGGGCATGAAAAGTA
CTATCGCAGGAAGTCGTGCTCCGATATATTTGCGTTTTGCCTCGCGCATC
CATATTGCCATGGTGAAGAATAATTTGCTTAATCCTTCTTCATATTGACT
TCATGTGGTGGCCATATTGTCAAGTACGCCACGCGCCATTTTAGCCCCGC
GACACTACCATACTTCAGTACTCTCGTTCTCTGACTGGGAAGTCTTAGTG
ATCGGACCGATGTGTCGGAGAAAATTATGCTGGACATGTGAGCTCGTAGC
CCCCAAAGCGTGTTTTGTGTGTCAAAATATGTTGAGATGCTTGCATAGTA
TCGGTTTACCGCTCCCGCCCGGCCGCGCACCCCCCACATACGGCCATCAC
GACGTTCTGTAGTGCTAGCTAGCAATGCTGCCTGGTATCCATTAAGAATT
ACCAGGTTAACTGGCAAACGGTTTTCTTCGTGATACCAGGTATGTGCAGG
AGTTCCAGAAGTGTCTGGATGCCACGGAACCCGTACCCTATTCCAAGATA
CTGTCCATTGTGAAGGATGAGGTGAGAAGACGGCCTCGGTGCTGTATGAC
ATGA
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Coding sequence (CDS) from alignment at H-paniculata_contig5309:11480..14083+

>mRNA_H-paniculata_contig5309.12714.1 ID=mRNA_H-paniculata_contig5309.12714.1|Name=mRNA_H-paniculata_contig5309.12714.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=672bp|location=Sequence derived from alignment at H-paniculata_contig5309:11480..14083+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGTCCACGGAGTGGGGTAGCAGGTAGTACGACAGGTGGCGATGGTAC
CGCTACTGCGGGTGCTGCAGGTACCGCAACGGCGGCGGCGGCGGCACCGG
GCCAAGAGCTTGACCCCGCCGGAGTCGCGCGTACTGTGCGCACACTATTT
GAACGGATGCGTCCACGGAGTGGGGTAGCAGGTAGTACGACAGGTGGCGA
TGGTACCGCTACTGCGGGTGCTGCAGGTACCGCAACGGCGGCGGCGGCGG
CACCGGGCCAAGAGCTTGACCCCGCCGGAGTCGCGCGTACTGTGCGCACA
CTATTTGAACGGCTGGGAGCGACCTACATCAAGCTGGGACAGTTCATCGC
TTCCTCGCCGACCCTGTTTCCTTCTGACTGGGAGCGACCTACATCAAGCT
GGGACAGTTCATCGCTTCCTCGCCGACCCTGTTTCCTTCTGAGTATGTGC
AGGAGTTCCAGAAGTGTCTGGATGCCACGGAACCCGTACCCTATTCCAAG
ATACTGTCCATTGTGAAGGATGAGGTGAGAAGACGGCCTCGGTGCTGTAT
GACATGAGTATGTGCAGGAGTTCCAGAAGTGTCTGGATGCCACGGAACCC
GTACCCTATTCCAAGATACTGTCCATTGTGAAGGATGAGGTGAGAAGACG
GCCTCGGTGCTGTATGACATGA
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