prot_H-paniculata_contig5309.12713.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig5309.12713.1
Unique Nameprot_H-paniculata_contig5309.12713.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length458
Homology
BLAST of mRNA_H-paniculata_contig5309.12713.1 vs. uniprot
Match: D8LR18_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR18_ECTSI)

HSP 1 Score: 162 bits (411), Expect = 2.900e-41
Identity = 159/488 (32.58%), Postives = 204/488 (41.80%), Query Frame = 0
Query:    6 WKCEKCGREVPLRNREVHARRCQGIIAPRQLESPPPPL--PPSPPRQAPEPQTHTLPGSPNVFTP----------RHQQRATGGRGGGRGRAGREAAVAMARNEDPSGAMESSPSQ-WKCSACTFLNARDLLSCEMCSTAIPAGERPPDAIYRDMLISDTPAGNNFGLDSHLGSSIVAEWMAAMEEEEERFRQLERRYNRIGHTTRGGGSGXXXXXXXXXG-PSVSDAATGSAIGAVGAGLIAAMAPGNRRSSRVVSSMFQGALLGGVAGVTIG-----PELRRSTSDSSSRARESRAYHEAGDEISTQDLDLLAEYRRLVRQPPPATQRVPGVRRDNDGGGRSAAQNFEEVMLARHLRQMGI-LDPTISRHER----------------RLLRARRGVGGGGGSQAPGRGSQPASAGTVSSLPEEVVDRVFLDRLPEDGRQCCICLENYCEREVVARLPCLHLYHANCIKSWLSTSSTCPQCKHSVN 457
            W C++CG EVP+ NREVH  +C+   +P QL SPPP    PPSP    P+ Q    P S NVFTP          R   +  G    GRG A               G  ES  +  W C+ACT+LN   +  C+MC T +   +RPPDA YRD LI                                                      XXX      G  ++S AA GSAIGA+G  L++A+ PG  R+S V+SSMFQGAL+GG+AG  +G     P                                 ++ +   VR P    +R           GR      E +MLAR L  + +       R E                 R L   +     GG      G+ PASA  +++LP E +    L  L +DGRQCCICLE++   E   RLPCLHLYH  CI++WL TS TCPQCK  V+
Sbjct:    6 WVCQRCGHEVPIDNREVHEAQCRRN-SPAQLLSPPPVTGSPPSP--FDPDNQ----PFSRNVFTPAQPPAAEAAARESGQPCGFAAAGRGAASXXXXXXXXXXXSTEGEGESGDTTTWACAACTYLNDFGVSRCDMCGTRMSPQQRPPDATYRDTLIGGGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDQGLLDGRTTISGAAAGSAIGAIGGALLSAVQPG-ARASGVMSSMFQGALMGGMAGAALGGLSDEPGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQVSSFE-FVRGPTARVRR-----------GRDVVSEMESLMLARRLEALSLPASAAAMRREGGXXXXXXXSSIYAGILRQLAEAQNHDAAGGDAXXXXGTSPASARAIAALPGEALTAGALAHLKDDGRQCCICLEDFEAGEKATRLPCLHLYHTVCIENWLQTSGTCPQCKFRVD 473          
BLAST of mRNA_H-paniculata_contig5309.12713.1 vs. uniprot
Match: A0A6H5L176_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L176_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 1.390e-18
Identity = 60/130 (46.15%), Postives = 71/130 (54.62%), Query Frame = 0
Query:  328 GRSAAQNFEEVMLARHLRQMGILDPTISRHERRLLRARRGVGGGGGSQAPGRGSQPASAGTVSSLPEEVVDRVFLDRLPEDGRQCCICLENYCEREVVARLPCLHLYHANCIKSWLSTSSTCPQCKHSVN 457
            GR A    E +MLAR       LD  I R   RL  A      GG        S PASA  +++LP E +    L  L +DGRQCCICLE +   E   RLPCLHLYH+ CI++WL TS TCPQCK  V+
Sbjct:  488 GRDAVSEVESLMLAR-------LDARILR---RLAEAHNHDAAGGXXXXXXXAS-PASARAIAALPGETLTAGSLAHLKDDGRQCCICLEEFEAGERATRLPCLHLYHSVCIENWLQTSGTCPQCKFRVD 606          
BLAST of mRNA_H-paniculata_contig5309.12713.1 vs. uniprot
Match: A0A7S0Y4G8_HEMAN (Hypothetical protein (Fragment) n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0Y4G8_HEMAN)

HSP 1 Score: 74.7 bits (182), Expect = 1.200e-12
Identity = 31/79 (39.24%), Postives = 50/79 (63.29%), Query Frame = 0
Query:  375 QAPGRGSQPASAGTVSSLPEEVVDRVFLDRLPEDGRQCCICLENYCEREVVARLPCLHLYHANCIKSWLSTSSTCPQCK 453
            QA   G++P++ G +  LP+  + RV  ++L E G  C ICL +Y E ++   LPC+H++H+ C+  WL+ S +CP CK
Sbjct:   26 QASVEGNRPSTKGEMRMLPQHALTRVDAEKLGELGLNCIICLTDYEEGDMTKLLPCMHVFHSECVDEWLAISRSCPMCK 104          
BLAST of mRNA_H-paniculata_contig5309.12713.1 vs. uniprot
Match: A0A7S4MPT7_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MPT7_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 1.120e-11
Identity = 37/85 (43.53%), Postives = 50/85 (58.82%), Query Frame = 0
Query:  373 GSQAPGRGSQPASAGTVSSLPEEVVDRVFLDRLPEDGRQCCICLENYCEREVVARLPCLHLYHANCIKSWLSTSSTCPQCKHSVN 457
            G  +  RG+ PA    +S+LP   +     D LPED RQC ICLE++   +    LPCLH +H  CI  WL  ++TCP CKH+V+
Sbjct:   67 GDGSENRGADPA---VMSALPTATIGDPTKD-LPEDRRQCSICLEDFATGDERKTLPCLHGFHEECIDRWLEGNATCPVCKHAVD 147          
BLAST of mRNA_H-paniculata_contig5309.12713.1 vs. uniprot
Match: A0A1E7FA57_9STRA (RING-type domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FA57_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 1.490e-11
Identity = 33/77 (42.86%), Postives = 45/77 (58.44%), Query Frame = 0
Query:  384 ASAGTVSSLPEEVVDRVFL---DRLPEDGRQCCICLENYCEREVVARLPCLHLYHANCIKSWLSTSSTCPQCKHSVN 457
            A  G +  LP  ++    L     LPED RQC ICLE++ + E  + LPCLH +H NC   WL T+ +CP CKH ++
Sbjct:   19 ADEGDIRQLPTHILKDDPLKGPSALPEDARQCLICLEDFAKGERRSILPCLHGFHTNCSTKWLRTNGSCPICKHRIS 95          
BLAST of mRNA_H-paniculata_contig5309.12713.1 vs. uniprot
Match: A0A7S0V7P0_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0V7P0_9CRYP)

HSP 1 Score: 65.5 bits (158), Expect = 1.380e-9
Identity = 29/71 (40.85%), Postives = 41/71 (57.75%), Query Frame = 0
Query:  380 GSQPASAGTVSSLPEEVVDRVFLDRLPEDGRQCCICLENYCEREVVARLPCLHLYHANCIKSWLSTSSTCP 450
            G +PA+ G +  LP  V+ R    +L E G  C ICL +Y E +    LPC+HL+H+ C+  WL  S +CP
Sbjct:   33 GDKPATKGEMRMLPLHVLTRSDAAKLGELGLNCIICLTDYEEGDTTKLLPCMHLFHSECVDEWLGISRSCP 103          
BLAST of mRNA_H-paniculata_contig5309.12713.1 vs. uniprot
Match: M1DX13_SOLTU (RING-H2 finger protein RHG1a n=1 Tax=Solanum tuberosum TaxID=4113 RepID=M1DX13_SOLTU)

HSP 1 Score: 67.0 bits (162), Expect = 2.580e-9
Identity = 25/51 (49.02%), Postives = 34/51 (66.67%), Query Frame = 0
Query:  406 PEDGRQCCICLENYCEREVVARLPCLHLYHANCIKSWLSTSSTCPQCKHSV 456
            PE    CCICLE YC++E +AR+ C H+YH +C+K W    +TCP C+  V
Sbjct:  107 PETKDHCCICLEEYCDKEELARIDCGHMYHMDCLKEWNKIVNTCPVCRRRV 157          
BLAST of mRNA_H-paniculata_contig5309.12713.1 vs. uniprot
Match: A0A1C7N1K4_9FUNG (RING-type E3 ubiquitin transferase (Fragment) n=1 Tax=Choanephora cucurbitarum TaxID=101091 RepID=A0A1C7N1K4_9FUNG)

HSP 1 Score: 69.3 bits (168), Expect = 4.040e-9
Identity = 32/79 (40.51%), Postives = 43/79 (54.43%), Query Frame = 0
Query:  382 QPASAGTVSSLPEEVVD----RVFLDRLPEDGRQCCICLENYCEREVVARLPCLHLYHANCIKSWLSTSSTCPQCKHSV 456
            Q  SA      PE+V+D    R   D+       C +C +N+   E V  LPCLH++H +CIK WL  + TCP C+HSV
Sbjct:  285 QAGSASAPPPAPEQVIDSLPKRSLTDKEKAQEIDCAVCKDNFEPTEQVIELPCLHIFHDDCIKPWLKLNGTCPVCRHSV 363          
BLAST of mRNA_H-paniculata_contig5309.12713.1 vs. uniprot
Match: A0A0F7SWS7_PHARH (FOG: Predicted E3 ubiquitin ligase n=1 Tax=Phaffia rhodozyma TaxID=264483 RepID=A0A0F7SWS7_PHARH)

HSP 1 Score: 69.3 bits (168), Expect = 5.410e-9
Identity = 29/74 (39.19%), Postives = 46/74 (62.16%), Query Frame = 0
Query:  383 PASAGTVSSLPEEVVDRVFLDRLPEDGRQCCICLENYCEREVVARLPCLHLYHANCIKSWLSTSSTCPQCKHSV 456
            PAS   ++ LP   +  ++LD +  D + C IC+  +   E   +LPC HL+H+NCI +WL T+ TCP C++S+
Sbjct:  321 PASKSQINDLPVIPISSIYLDGM--DDKNCTICMSAFEPGEEGKKLPCTHLFHSNCISTWLETNGTCPICRYSL 392          
BLAST of mRNA_H-paniculata_contig5309.12713.1 vs. uniprot
Match: A0A426XEQ1_ENSVE (RING-type domain-containing protein n=5 Tax=Musaceae TaxID=4637 RepID=A0A426XEQ1_ENSVE)

HSP 1 Score: 67.8 bits (164), Expect = 5.760e-9
Identity = 25/54 (46.30%), Postives = 35/54 (64.81%), Query Frame = 0
Query:  403 DRLPEDGRQCCICLENYCEREVVARLPCLHLYHANCIKSWLSTSSTCPQCKHSV 456
            D L  + ++CCICL  Y ++E V +LPCLH++H NC+  WL   S CP CK  +
Sbjct:  226 DDLANENQECCICLAKYSDKEEVRQLPCLHVFHLNCVDQWLRIMSACPLCKQGL 279          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5309.12713.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LR18_ECTSI2.900e-4132.58RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5L176_9PHAE1.390e-1846.15RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A7S0Y4G8_HEMAN1.200e-1239.24Hypothetical protein (Fragment) n=2 Tax=Hemiselmis... [more]
A0A7S4MPT7_9STRA1.120e-1143.53Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A1E7FA57_9STRA1.490e-1142.86RING-type domain-containing protein n=1 Tax=Fragil... [more]
A0A7S0V7P0_9CRYP1.380e-940.85Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
M1DX13_SOLTU2.580e-949.02RING-H2 finger protein RHG1a n=1 Tax=Solanum tuber... [more]
A0A1C7N1K4_9FUNG4.040e-940.51RING-type E3 ubiquitin transferase (Fragment) n=1 ... [more]
A0A0F7SWS7_PHARH5.410e-939.19FOG: Predicted E3 ubiquitin ligase n=1 Tax=Phaffia... [more]
A0A426XEQ1_ENSVE5.760e-946.30RING-type domain-containing protein n=5 Tax=Musace... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 169..196
NoneNo IPR availableGENE3D2.20.28.140coord: 103..149
e-value: 6.6E-10
score: 40.6
NoneNo IPR availablePANTHERPTHR15710E3 UBIQUITIN-PROTEIN LIGASE PRAJAcoord: 377..456
NoneNo IPR availablePANTHERPTHR15710:SF51coord: 377..456
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 394..456
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 412..452
e-value: 6.5E-6
score: 35.7
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 411..453
e-value: 5.3E-10
score: 39.5
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 412..453
score: 12.283
IPR001876Zinc finger, RanBP2-typeSMARTSM00547zf_4coord: 108..132
e-value: 1.9E-5
score: 34.1
IPR001876Zinc finger, RanBP2-typePROSITEPS01358ZF_RANBP2_1coord: 110..129
IPR001876Zinc finger, RanBP2-typePROSITEPS50199ZF_RANBP2_2coord: 106..135
score: 8.174
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 375..457
e-value: 2.0E-17
score: 64.6
IPR036443Zinc finger, RanBP2-type superfamilySUPERFAMILY90209Ran binding protein zinc finger-likecoord: 105..131

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5309contigH-paniculata_contig5309:1936..9790 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5309.12713.1mRNA_H-paniculata_contig5309.12713.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig5309 1497..9835 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig5309.12713.1 ID=prot_H-paniculata_contig5309.12713.1|Name=mRNA_H-paniculata_contig5309.12713.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=458bp
MVTMNWKCEKCGREVPLRNREVHARRCQGIIAPRQLESPPPPLPPSPPRQ
APEPQTHTLPGSPNVFTPRHQQRATGGRGGGRGRAGREAAVAMARNEDPS
GAMESSPSQWKCSACTFLNARDLLSCEMCSTAIPAGERPPDAIYRDMLIS
DTPAGNNFGLDSHLGSSIVAEWMAAMEEEEERFRQLERRYNRIGHTTRGG
GSGGHGAGGVGGGPSVSDAATGSAIGAVGAGLIAAMAPGNRRSSRVVSSM
FQGALLGGVAGVTIGPELRRSTSDSSSRARESRAYHEAGDEISTQDLDLL
AEYRRLVRQPPPATQRVPGVRRDNDGGGRSAAQNFEEVMLARHLRQMGIL
DPTISRHERRLLRARRGVGGGGGSQAPGRGSQPASAGTVSSLPEEVVDRV
FLDRLPEDGRQCCICLENYCEREVVARLPCLHLYHANCIKSWLSTSSTCP
QCKHSVN*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR001876Znf_RanBP2
IPR013083Znf_RING/FYVE/PHD
IPR036443Znf_RanBP2_sf