mRNA_H-paniculata_contig5308.12712.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5308.12712.1
Unique NamemRNA_H-paniculata_contig5308.12712.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig5308.12712.1 vs. uniprot
Match: A0A6H5KWT8_9PHAE (Ribosomal_S7 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KWT8_9PHAE)

HSP 1 Score: 414 bits (1063), Expect = 6.290e-142
Identity = 215/234 (91.88%), Postives = 223/234 (95.30%), Query Frame = 1 
Query:    1 MATELNPDGWDAGEPVVEEPVAATDEGWGEPEV--PQAMEETGIADVKLFNKWTFDDIEIRDISLEDYIAVKGKYATFLPHTAGRYQKKRFRKATCPIVERLCVSLMRKGRNSGKKLMAARIVKHTLEIIHLLTDQNPVQVLVDAVINSGPREDSTRVGSAGVVRRQAVDLSPFRRVNQALYLITTGARESSFRNIKTIAECLADEIINAARGSSNSYAIKKKDEIERVAKANR 696
            MATELNPDGWD GEPVV +   A  EGWGEPEV  P A+EE+GI+DV+LFNKW+FDDIEIRDISLEDYIAVKGKYAT+LPHTAGRYQKKRFRKATCPIVERLC +LMRKGRNSGKKLMAARIVKHTLEIIHLLTDQNPVQVLVDAVINSGPREDSTRVGSAGVVRRQAVDLSPFRRVNQALYLITTGARESSFRNIKTIAECLADEIINAARGSSNSYAIKKKDEIERVAKANR
Sbjct:    1 MATELNPDGWDGGEPVVADDAGAA-EGWGEPEVEAPLAVEESGISDVQLFNKWSFDDIEIRDISLEDYIAVKGKYATYLPHTAGRYQKKRFRKATCPIVERLCCALMRKGRNSGKKLMAARIVKHTLEIIHLLTDQNPVQVLVDAVINSGPREDSTRVGSAGVVRRQAVDLSPFRRVNQALYLITTGARESSFRNIKTIAECLADEIINAARGSSNSYAIKKKDEIERVAKANR 233
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BLAST of mRNA_H-paniculata_contig5308.12712.1 vs. uniprot
Match: A0A835ZGP4_9STRA (Ribosomal protein S7 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGP4_9STRA)

HSP 1 Score: 328 bits (840), Expect = 9.910e-109
Identity = 162/190 (85.26%), Postives = 182/190 (95.79%), Query Frame = 1 
Query:  127 ADVKLFNKWTFDDIEIRDISLEDYIAVKGKYATFLPHTAGRYQKKRFRKATCPIVERLCVSLMRKGRNSGKKLMAARIVKHTLEIIHLLTDQNPVQVLVDAVINSGPREDSTRVGSAGVVRRQAVDLSPFRRVNQALYLITTGARESSFRNIKTIAECLADEIINAARGSSNSYAIKKKDEIERVAKANR 696
            +++KLFNKW++DDIEI DISL DY+AV  K+ATFLPHTAGRYQKKRFRKA CP++ERL VSLMRKGRNSGKKL+AAR+V+ T+EIIHLLTD+NP+Q LV+AVIN+GPREDSTRVGSAGVVRRQAVDLSPFRRVNQA+YL+TTGARESSFRNIKTIAECLADEIINA+RGSSNSYAIKKKDEIERVAKANR
Sbjct:    4 SEIKLFNKWSYDDIEIEDISLSDYLAVGTKHATFLPHTAGRYQKKRFRKAACPLIERLTVSLMRKGRNSGKKLLAARVVRSTMEIIHLLTDENPLQTLVNAVINAGPREDSTRVGSAGVVRRQAVDLSPFRRVNQAIYLLTTGARESSFRNIKTIAECLADEIINASRGSSNSYAIKKKDEIERVAKANR 193
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BLAST of mRNA_H-paniculata_contig5308.12712.1 vs. uniprot
Match: A0A7S3V821_9STRA (Hypothetical protein n=3 Tax=Bacillariophyta TaxID=2836 RepID=A0A7S3V821_9STRA)

HSP 1 Score: 327 bits (838), Expect = 5.680e-108
Identity = 168/223 (75.34%), Postives = 195/223 (87.44%), Query Frame = 1 
Query:   31 DAGEPVVEEPVAATDEGWGE-PEVPQAMEETGIADVKLFNKWTFDDIEIRDISLEDYIAVKGKYATFLPHTAGRYQKKRFRKATCPIVERLCVSLMRKGRNSGKKLMAARIVKHTLEIIHLLTDQNPVQVLVDAVINSGPREDSTRVGSAGVVRRQAVDLSPFRRVNQALYLITTGARESSFRNIKTIAECLADEIINAARGSSNSYAIKKKDEIERVAKANR 696
            D  EP+VEE     DE   E  E P+ + + G A++KLF KW+FD+IE+RDISLEDYIA KG +AT+LPHTAGRYQ KRFRKA+CPIVERL   LM+KGRNSGKK+MA RIV+HTLEIIH+LTDQNP+Q++VDAVINSGPREDSTRVG AGVVRRQAVD+SPFRRVN ALYLI TGARE+SFRN+KT+AECLA+E+INAARGSSNSYAIKKKDEIERV+K+NR
Sbjct:    3 DVEEPIVEE--TTYDEEVEEVEEEPEFVGDAGGAEIKLFGKWSFDEIEVRDISLEDYIACKGDHATYLPHTAGRYQMKRFRKASCPIVERLACCLMKKGRNSGKKIMATRIVQHTLEIIHILTDQNPIQIVVDAVINSGPREDSTRVGGAGVVRRQAVDMSPFRRVNYALYLIATGAREASFRNLKTMAECLAEELINAARGSSNSYAIKKKDEIERVSKSNR 223
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BLAST of mRNA_H-paniculata_contig5308.12712.1 vs. uniprot
Match: W7TXQ4_9STRA (Ribosomal protein S7, conserved site n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TXQ4_9STRA)

HSP 1 Score: 326 bits (836), Expect = 8.620e-108
Identity = 164/194 (84.54%), Postives = 179/194 (92.27%), Query Frame = 1 
Query:  115 ETGIADVKLFNKWTFDDIEIRDISLEDYIAVKGKYATFLPHTAGRYQKKRFRKATCPIVERLCVSLMRKGRNSGKKLMAARIVKHTLEIIHLLTDQNPVQVLVDAVINSGPREDSTRVGSAGVVRRQAVDLSPFRRVNQALYLITTGARESSFRNIKTIAECLADEIINAARGSSNSYAIKKKDEIERVAKANR 696
            E   AD+KLF KW+  D+EI+D+SLEDYI V GK AT+LPHTAGRYQKKRFRKA CP+VERL  SLMRKGRNSGKKL A RIVKHTLEIIHLLTDQNPVQV+VD++IN+GPREDSTRVGSAGVVRRQAVD+SPFRRVNQA+YLITTGARESSFRNIKTIAE LADEIINAA+GSSNSYAIKKKDE+ERVAKANR
Sbjct:   22 EDNSADIKLFGKWSLSDVEIKDLSLEDYIGVNGKCATYLPHTAGRYQKKRFRKAQCPVVERLANSLMRKGRNSGKKLTANRIVKHTLEIIHLLTDQNPVQVVVDSIINAGPREDSTRVGSAGVVRRQAVDMSPFRRVNQAIYLITTGARESSFRNIKTIAETLADEIINAAKGSSNSYAIKKKDEVERVAKANR 215
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BLAST of mRNA_H-paniculata_contig5308.12712.1 vs. uniprot
Match: B8CC69_THAPS (RS5, ribosomal protein 5 n=10 Tax=Ochrophyta TaxID=2696291 RepID=B8CC69_THAPS)

HSP 1 Score: 326 bits (836), Expect = 9.570e-108
Identity = 161/192 (83.85%), Postives = 179/192 (93.23%), Query Frame = 1 
Query:  121 GIADVKLFNKWTFDDIEIRDISLEDYIAVKGKYATFLPHTAGRYQKKRFRKATCPIVERLCVSLMRKGRNSGKKLMAARIVKHTLEIIHLLTDQNPVQVLVDAVINSGPREDSTRVGSAGVVRRQAVDLSPFRRVNQALYLITTGARESSFRNIKTIAECLADEIINAARGSSNSYAIKKKDEIERVAKANR 696
            G  +VKLF KW+FDDIEIRDISL DYIA KG +AT+LPHTAGRYQKKRFRKA+CPIVERL   LMRKGRNSGKKLMA RIV+HTLEIIHLLTDQNPVQV+VDA+INSGPREDSTRVG AGVVRRQAVD+SPFRRVN ALYL+ TGARE+SFRN+KT+AECLA+E++NAARGSSNSYAIKKKDEIERV+K+NR
Sbjct:   27 GATEVKLFGKWSFDDIEIRDISLVDYIACKGDHATYLPHTAGRYQKKRFRKASCPIVERLACCLMRKGRNSGKKLMAVRIVQHTLEIIHLLTDQNPVQVVVDAIINSGPREDSTRVGGAGVVRRQAVDMSPFRRVNYALYLLATGAREASFRNLKTVAECLAEELVNAARGSSNSYAIKKKDEIERVSKSNR 218
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BLAST of mRNA_H-paniculata_contig5308.12712.1 vs. uniprot
Match: D8TJL0_VOLCA (Component of cytosolic 80S ribosome and 40S small subunit n=2 Tax=Viridiplantae TaxID=33090 RepID=D8TJL0_VOLCA)

HSP 1 Score: 325 bits (832), Expect = 1.610e-107
Identity = 158/189 (83.60%), Postives = 178/189 (94.18%), Query Frame = 1 
Query:  130 DVKLFNKWTFDDIEIRDISLEDYIAVKGKYATFLPHTAGRYQKKRFRKATCPIVERLCVSLMRKGRNSGKKLMAARIVKHTLEIIHLLTDQNPVQVLVDAVINSGPREDSTRVGSAGVVRRQAVDLSPFRRVNQALYLITTGARESSFRNIKTIAECLADEIINAARGSSNSYAIKKKDEIERVAKANR 696
            DVKLF KW+F+DIE++DISLEDYIAVK KYA ++PHTAGRYQKKRFRKA CPIVERLC SLM  GRN+GKKLMA RIVKH  +IIHLLTDQNP+QVLVDA+INSGPRED+TR+GSAGVVRRQAVD+SP RRVNQA+YL+TTGARE++FRNIKTIAECLADE++NAA+GSSNSYAIKKKDEIERVAKANR
Sbjct:    5 DVKLFGKWSFEDIEVQDISLEDYIAVKTKYAVYVPHTAGRYQKKRFRKALCPIVERLCNSLMMHGRNNGKKLMAVRIVKHAFDIIHLLTDQNPIQVLVDAIINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADELVNAAKGSSNSYAIKKKDEIERVAKANR 193
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BLAST of mRNA_H-paniculata_contig5308.12712.1 vs. uniprot
Match: A0A7S1X021_9CHLO (Hypothetical protein n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1X021_9CHLO)

HSP 1 Score: 324 bits (831), Expect = 7.470e-107
Identity = 162/202 (80.20%), Postives = 181/202 (89.60%), Query Frame = 1 
Query:   91 PEVPQAMEETGIADVKLFNKWTFDDIEIRDISLEDYIAVKGKYATFLPHTAGRYQKKRFRKATCPIVERLCVSLMRKGRNSGKKLMAARIVKHTLEIIHLLTDQNPVQVLVDAVINSGPREDSTRVGSAGVVRRQAVDLSPFRRVNQALYLITTGARESSFRNIKTIAECLADEIINAARGSSNSYAIKKKDEIERVAKANR 696
            P V  A EE   ADVKLF KWTFDDIE++DISLEDYIAVK K A F+PHTAGRYQKKRFRKA CPI+ERL  SLM  GRN+GKKLMA+RIV H  EIIHLLTDQNP+QV VDA+INSGPRED+TR+GSAGVVRRQAVD+SP RRVNQA++L+TTGARE++FRN+KTIAECLADE+INAA+GSSNSYAIKKKDEIERVAKANR
Sbjct:   26 PPVTMATEEVRPADVKLFGKWTFDDIEVKDISLEDYIAVKAKSAVFVPHTAGRYQKKRFRKAQCPIIERLTCSLMMHGRNNGKKLMASRIVAHAFEIIHLLTDQNPLQVAVDAIINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIWLLTTGAREAAFRNVKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 227
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BLAST of mRNA_H-paniculata_contig5308.12712.1 vs. uniprot
Match: A0A2K3DQA6_CHLRE (Ribosomal_S7 domain-containing protein n=9 Tax=CS clade TaxID=2812636 RepID=A0A2K3DQA6_CHLRE)

HSP 1 Score: 322 bits (824), Expect = 2.620e-106
Identity = 156/189 (82.54%), Postives = 177/189 (93.65%), Query Frame = 1 
Query:  130 DVKLFNKWTFDDIEIRDISLEDYIAVKGKYATFLPHTAGRYQKKRFRKATCPIVERLCVSLMRKGRNSGKKLMAARIVKHTLEIIHLLTDQNPVQVLVDAVINSGPREDSTRVGSAGVVRRQAVDLSPFRRVNQALYLITTGARESSFRNIKTIAECLADEIINAARGSSNSYAIKKKDEIERVAKANR 696
            DVKLF KW+F+DIE+ DISLEDYIAVK KYA ++PHTAGRYQK+RFRKA CPIVERLC SLM  GRN+GKKLMA RIVKH  +IIHLLTDQNP+QV+VDA+INSGPRED+TR+GSAGVVRRQAVD+SP RRVNQA+YL+TTGARE++FRNIKTIAECLADE++NAA+GSSNSYAIKKKDEIERVAKANR
Sbjct:    5 DVKLFGKWSFEDIEVTDISLEDYIAVKTKYAVYVPHTAGRYQKRRFRKALCPIVERLCNSLMMHGRNNGKKLMAVRIVKHAFDIIHLLTDQNPIQVVVDAIINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADELVNAAKGSSNSYAIKKKDEIERVAKANR 193
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BLAST of mRNA_H-paniculata_contig5308.12712.1 vs. uniprot
Match: A0A7S4N0H9_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4N0H9_9STRA)

HSP 1 Score: 322 bits (826), Expect = 4.900e-106
Identity = 159/192 (82.81%), Postives = 177/192 (92.19%), Query Frame = 1 
Query:  121 GIADVKLFNKWTFDDIEIRDISLEDYIAVKGKYATFLPHTAGRYQKKRFRKATCPIVERLCVSLMRKGRNSGKKLMAARIVKHTLEIIHLLTDQNPVQVLVDAVINSGPREDSTRVGSAGVVRRQAVDLSPFRRVNQALYLITTGARESSFRNIKTIAECLADEIINAARGSSNSYAIKKKDEIERVAKANR 696
            G  +VKLF KW+FDD+E+RDISL DYIA  G +A FLPHTAGRYQKKRFRKA+CPIVERL   LM+KGRNSGKKLMA RIV+HTLEIIHLLTDQNP+QV+VDA+INSGPREDSTRVG AGVVRRQAVD+SPFRRVN ALYLI TGARE+SFRN+KT+AECLA+E+INAARGSSNSYAIKKKDEIERVAK+NR
Sbjct:   40 GATEVKLFGKWSFDDVEVRDISLVDYIACTGDHAVFLPHTAGRYQKKRFRKASCPIVERLACCLMKKGRNSGKKLMACRIVQHTLEIIHLLTDQNPIQVVVDAIINSGPREDSTRVGGAGVVRRQAVDMSPFRRVNYALYLIATGAREASFRNLKTMAECLAEELINAARGSSNSYAIKKKDEIERVAKSNR 231
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BLAST of mRNA_H-paniculata_contig5308.12712.1 vs. uniprot
Match: A0A6V2ER46_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2ER46_9STRA)

HSP 1 Score: 320 bits (821), Expect = 2.990e-105
Identity = 157/189 (83.07%), Postives = 178/189 (94.18%), Query Frame = 1 
Query:  130 DVKLFNKWTFDDIEIRDISLEDYIAVKGKYATFLPHTAGRYQKKRFRKATCPIVERLCVSLMRKGRNSGKKLMAARIVKHTLEIIHLLTDQNPVQVLVDAVINSGPREDSTRVGSAGVVRRQAVDLSPFRRVNQALYLITTGARESSFRNIKTIAECLADEIINAARGSSNSYAIKKKDEIERVAKANR 696
            +VKLF KW+FD+IE+RDISL DYIA KG +AT+LPHTAGRYQKKRFRKA+CPIVERL   LMRKGRN+GKKLMA RIV+HTLEIIHLLTDQNP+QV+VDA+INSGPREDSTRVG AGVVRRQAVD+SPFRRVN ALYL+ TGARE+SFRN+KT+AECLA+E+INAARGSSNSYAIKKKDEIERV+K+NR
Sbjct:   45 EVKLFGKWSFDEIEVRDISLVDYIACKGDHATYLPHTAGRYQKKRFRKASCPIVERLACCLMRKGRNAGKKLMAVRIVQHTLEIIHLLTDQNPIQVVVDAIINSGPREDSTRVGGAGVVRRQAVDMSPFRRVNYALYLLATGAREASFRNLKTMAECLAEELINAARGSSNSYAIKKKDEIERVSKSNR 233
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5308.12712.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KWT8_9PHAE6.290e-14291.88Ribosomal_S7 domain-containing protein n=2 Tax=Ect... [more]
A0A835ZGP4_9STRA9.910e-10985.26Ribosomal protein S7 domain-containing protein n=1... [more]
A0A7S3V821_9STRA5.680e-10875.34Hypothetical protein n=3 Tax=Bacillariophyta TaxID... [more]
W7TXQ4_9STRA8.620e-10884.54Ribosomal protein S7, conserved site n=2 Tax=Monod... [more]
B8CC69_THAPS9.570e-10883.85RS5, ribosomal protein 5 n=10 Tax=Ochrophyta TaxID... [more]
D8TJL0_VOLCA1.610e-10783.60Component of cytosolic 80S ribosome and 40S small ... [more]
A0A7S1X021_9CHLO7.470e-10780.20Hypothetical protein n=1 Tax=Tetraselmis chuii Tax... [more]
A0A2K3DQA6_CHLRE2.620e-10682.54Ribosomal_S7 domain-containing protein n=9 Tax=CS ... [more]
A0A7S4N0H9_9STRA4.900e-10682.81Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A6V2ER46_9STRA2.990e-10583.07Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5308contigH-paniculata_contig5308:9332..13000 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score415.2
Seed ortholog evalue2e-113
Seed eggNOG ortholog2880.D7G1X8
Preferred nameRPS5
KEGG koko:K02989,ko:K18914
KEGG Pathwayko03010,map03010
KEGG ModuleM00177
Hectar predicted targeting categoryother localisation
GOsGO:0000028,GO:0000184,GO:0000956,GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005773,GO:0005774,GO:0005829,GO:0005840,GO:0005844,GO:0005886,GO:0005911,GO:0006139,GO:0006401,GO:0006402,GO:0006403,GO:0006405,GO:0006407,GO:0006412,GO:0006413,GO:0006450,GO:0006518,GO:0006605,GO:0006611,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006996,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009506,GO:0009507,GO:0009536,GO:0009719,GO:0009725,GO:0009735,GO:0009892,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0015031,GO:0015833,GO:0015931,GO:0015935,GO:0016020,GO:0016043,GO:0016070,GO:0016071,GO:0019222,GO:0019439,GO:0019538,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0030054,GO:0030312,GO:0030684,GO:0030686,GO:0031090,GO:0031503,GO:0031974,GO:0031981,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0034622,GO:0034641,GO:0034645,GO:0034655,GO:0042221,GO:0042254,GO:0042255,GO:0042274,GO:0042788,GO:0042886,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044437,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045047,GO:0045184,GO:0046483,GO:0046700,GO:0046907,GO:0048519,GO:0050657,GO:0050658,GO:0050789,GO:0050896,GO:0051029,GO:0051168,GO:0051169,GO:0051179,GO:0051234,GO:0051236,GO:0051641,GO:0051649,GO:0055044,GO:0060255,GO:0065003,GO:0065007,GO:0065008,GO:0070013,GO:0070727,GO:0070925,GO:0070972,GO:0071166,GO:0071426,GO:0071428,GO:0071702,GO:0071704,GO:0071705,GO:0071826,GO:0071840,GO:0071944,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:0090304,GO:0097064,GO:0097159,GO:0098588,GO:0098805,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1990904
EggNOG free text desc.rRNA binding
EggNOG OGsCOG0049@1,KOG3291@2759
Ec32 ortholog descriptionRibosomal protein S5/S7, eukaryotic/archaeal
Ec32 orthologEc-07_003740.1
EC1.18.1.6
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko01000,ko03011,ko03029
Exons5
Model size1322
Cds size699
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5308.12712.1prot_H-paniculata_contig5308.12712.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5308 9955..13000 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930537.6450574-UTR-H-paniculata_contig5308:9331..99541622930537.6450574-UTR-H-paniculata_contig5308:9331..9954Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5308 9332..9954 -
1691481338.4989636-UTR-H-paniculata_contig5308:9331..99541691481338.4989636-UTR-H-paniculata_contig5308:9331..9954Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5308 9332..9954 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930537.6569817-CDS-H-paniculata_contig5308:9954..101221622930537.6569817-CDS-H-paniculata_contig5308:9954..10122Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5308 9955..10122 -
1691481338.5125282-CDS-H-paniculata_contig5308:9954..101221691481338.5125282-CDS-H-paniculata_contig5308:9954..10122Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5308 9955..10122 -
1622930537.6778333-CDS-H-paniculata_contig5308:10391..105081622930537.6778333-CDS-H-paniculata_contig5308:10391..10508Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5308 10392..10508 -
1691481338.5218139-CDS-H-paniculata_contig5308:10391..105081691481338.5218139-CDS-H-paniculata_contig5308:10391..10508Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5308 10392..10508 -
1622930537.6936362-CDS-H-paniculata_contig5308:11178..113131622930537.6936362-CDS-H-paniculata_contig5308:11178..11313Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5308 11179..11313 -
1691481338.531477-CDS-H-paniculata_contig5308:11178..113131691481338.531477-CDS-H-paniculata_contig5308:11178..11313Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5308 11179..11313 -
1622930537.7170973-CDS-H-paniculata_contig5308:11806..119331622930537.7170973-CDS-H-paniculata_contig5308:11806..11933Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5308 11807..11933 -
1691481338.5427246-CDS-H-paniculata_contig5308:11806..119331691481338.5427246-CDS-H-paniculata_contig5308:11806..11933Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5308 11807..11933 -
1622930537.7332408-CDS-H-paniculata_contig5308:12848..130001622930537.7332408-CDS-H-paniculata_contig5308:12848..13000Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5308 12849..13000 -
1691481338.5524936-CDS-H-paniculata_contig5308:12848..130001691481338.5524936-CDS-H-paniculata_contig5308:12848..13000Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5308 12849..13000 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5308.12712.1

>prot_H-paniculata_contig5308.12712.1 ID=prot_H-paniculata_contig5308.12712.1|Name=mRNA_H-paniculata_contig5308.12712.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=233bp
MATELNPDGWDAGEPVVEEPVAATDEGWGEPEVPQAMEETGIADVKLFNK
WTFDDIEIRDISLEDYIAVKGKYATFLPHTAGRYQKKRFRKATCPIVERL
CVSLMRKGRNSGKKLMAARIVKHTLEIIHLLTDQNPVQVLVDAVINSGPR
EDSTRVGSAGVVRRQAVDLSPFRRVNQALYLITTGARESSFRNIKTIAEC
LADEIINAARGSSNSYAIKKKDEIERVAKANR*
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mRNA from alignment at H-paniculata_contig5308:9332..13000-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5308.12712.1 ID=mRNA_H-paniculata_contig5308.12712.1|Name=mRNA_H-paniculata_contig5308.12712.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3669bp|location=Sequence derived from alignment at H-paniculata_contig5308:9332..13000- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCTACCGAATTGAACCCGGATGGCTGGGATGCCGGAGAGCCCGTGGT
GGAGGAGCCCGTGGCTGCGACCGATGAAGGTTGGGGAGAGCCCGAGGTGC
CTCAGGCCATGGAGGAGACCGGGATCGCGGACGTGAAGCTTTTCAACAAG
TGGTGAGGGTGTTTAACTTGAGTTTTTAATGAAGATGGGTGCTGCTGTGT
AGGAGAGGTGTGTGGTCTGTGATGGGTGTTTGCATCTTTGACGGTGGGGA
GAGCTCGGCACAGATATAGCATACACGGTGGTGGTGCTGCATATTGTGTG
CAATGTAGCATGCCTCACGTTGTTTTGTACTGTACCGTGTTTCGAGCTCT
CTTGTTGTGGTCGTCTGTCTGTAGTTGCGATGTTGGATGTGGGGCACATC
ATAGGCCACTTGCACGGTGAAATGTTTGGTCAATTCTGGGTACTGTTGGA
GCTAGTTCATAGGTCTTGCTTTTGTTCCTCGGATGTAGTGGTTTTTGGAT
AATTGATTTGCAAATCAGCAGCGAGGAAAGTCATTTTCGTCCCCTCTTGT
CAACAGCAGCAACCTGTTCTCGGAGAACAGGATACAGACACAACGAAAGT
AGAACTAAGCATGATACTAAAGCCTTACACACGACCTTTGTCCTTGGGTG
TGGATATTGTGTACAACAGACTAGATCTTAATCCAGGTCATGGTTGCTCA
GGAACTCCCGTGTCATTCACGTTTTGTTATAGTGAATAGATTATTCTGTG
CCATGACATCGCATGACTGCACTACATCTGGTGCCAGAAAGGCACCTGCT
AGATGCCTGCATTAATATCTAAATGGGCCACTCGAATGAACAAACACGTG
AGAATGAATTTACTTCAACCGTTCTAAATGGCTTGATCAGTTTCGGAAGC
AACTCCTGTGCTGTTGCAGTTTTCCTGGCGTGACAACGTTTTTGACCCTC
AAGTACCCTTGAGTCACATCTTGAAAGAAGTAAAATTGAGTCCAAATAAG
AACAAATAAGATAGCTCAAATAACACGGTTTTCTTCACCCCTTCCGATGT
CTCTGACCACGCATCAGGACATTCGATGACATCGAGATCCGTGACATTTC
GTTGGAGGACTACATCGCCGTGAAGGGAAAGTACGCTACTTTCCTTCCGC
ATACTGCGGGACGGTACCAAAAGAAGCGTTTCCGTAAGGCAACTGTGAGT
TACAGATGTGGAGACAGTTTTATTTGATCTATGTACATGACAAAAAAATG
CGTATGTCGAGGTGTTCTACATACTTGAAATTGGATTCTCATGGACAATT
GGTATTATGATCATCGAGTCTCCCTGTAGAGCAGCTAATTAACGCCGATT
TTAGAATTGATCCGAAATATGCTCACGAATCAAGTAGGCAAAATATCGAA
GGGGTGGATTTCGCACGGGATCGATACGCCATCTTGCTCTCGTGTCTTCT
ATCTCGATTCTGTGACGTTTGTGTTGATTTTATCCAGTACATGAGTGATT
GTGCGATAGGAGCTCATCGTTCTGGTTGGAGTTTACGGGGTTTTTCAAAG
TAGTTAAGCACTTTTTTTCGGATAAAGGCACTTCTGATTTACCGACATTT
CTGTTCGTCACATGATCGTTAATATCGACTCCCACCGTTGATTCTCTTTC
AAATATGAAATGGTGGCCCTGTGACATGGACCGACAGTGCCCCATCGTGG
AGCGTCTTTGCGTGTCGCTTATGCGCAAGGGGCGCAACAGCGGTAAGAAG
CTGATGGCGGCTCGCATCGTGAAGCACACCCTGGAGATCATCCACCTTCT
TACAGACCAAAACCCGGTTCAGGTGTGTAATATCCGCGTACAGCACGTCA
AGTAGGTGAAGTAAAATACAATCCTTCTGAGAAGTAGCGCTGAATCAAAT
GAGTGATGGTGACTGGTGGCCCTCCGTGCCAGTTGAATTGACATAACATT
TGGATACGTTATTTTGTAGAATGTTATGCCAATTCTGTGACGTGCGAATG
GAACGTCTTGGGGGTTGTGACGGTGACATGGTTTTGGGGCCACAATAATA
GTATCCGTAAAGTGCATCCCTCATCTCGCTTCACGGCTCGGTCTCATGTT
GTATCCTGTGCTTCGCGTAGAAAATAGGCTGCACAAAACGCAGTTGGATG
TAGTGCTTCGATTCACGTTGCTACATGATAAATATTACTTGTCCGTGTGG
TGCCCATGATGAAAGCTGGGGCCCATGTAGTCCAGTTGGCGTCGAAGGCA
CAAGCATCACTTCTTGAAACCTAACGCGGTGCATCCGACGCAATTCATGT
AACTGATACAGTGTTGCCTGTTCCATGACTAAGGTTTACTCGTTCCAGTA
CAAGTTGGTATCTGCCTTGAATTGCATGCCGTCCGAGACTTTGAAACATG
TATTTCGAAGCTGTGAAATACACCTGAACAGACGAGGTTGACCTTGATTC
GCTTCATCCCAACCAATGTCCTTGTTCATATATTTACTACAGGTGCTTGT
AGATGCCGTGATCAACTCCGGCCCTAGGGAAGACTCCACTCGCGTGGGGT
CTGCGGGTGTAGTTCGGCGCCAGGCTGTCGACCTGTCACCCTTCCGCCGT
GTTAACCAGGCGAGTAACTGAGTCGATCGGTCTTGCAGCATATATTATGT
GTGCATCGAAGGTCTGTCGTCAATCTAGTGTGGTCACTTTTGGGATGTGT
CTAGGCTCCCGTGAGATGCCTGAGAGCAAGCAATCTTCCCCGTTTCCTAT
CAGTTTCTTGTGGAGTTTGTATGACGGAATATTGATTTTTTTGCATTTTT
CGTGTTCGCACGATTTCCCCCAAGTCATTATCATGACCGCCCTCGTGCCC
AACCAAAATGTTATTCTGTCTTCTCAAGGCGCTATACCTGATCACCACTG
GAGCGCGTGAGTCATCATTCCGTAACATCAAGACTATCGCTGAGTGCCTC
GCGGACGAAATCATCAACGCCGCCCGTGGATCTTCGAACTCTTACGCCAT
CAAGAAGAAGGACGAGATCGAGCGTGTAGCAAAGGCTAACCGGTAGATGT
CTCTGTCTAGGGCGAGACGGAAGCATTGCGTGGTTTTTTCGCCGTGCTGA
TCTAAGACATCCTTCCGTGATGAGCCGGAGTTGGTTGAACCGTTTCGGGT
TGTTTCGATTGCTGACCACGGTTTTGTAGAAGGTGTGTTTCGTTGTCGCA
GAACGCCAAGGTGATGACACCCGGAGGAGTGTGGGGGGTCGGAGGGGCGA
TGACACGAATTTCCCATCGACTGCTAACATGAGGGGAGGAAAGGACTTAT
TTACAATCTAAGAGTACACGTCAAGGCAGAAAGGCTCGTGCTCGCCCTAA
TTTTTTCGCAGTCTGACACAAATATGCGATTAAAGTGGGTGTGCCTTGAT
GTACACGGCAAGGCTCCTGGACCATGGGAGCGCAGCCATCTTGTACCCGA
GGTATAAACGGCGTTTAATTCTTGCGTTTCATGGGCCTCGACGAGACCAA
ACCGCGTCGGCAATGTTATCGGAATGGAAATTTCACCTTGAATTCTGACG
AATCTCCAACCGCTAAATCGAGCAGGAAATATTACAATGCAAGTGAAAGA
ATTATGGCAGTATGAAGACAACTCACGAAGAAGAATCGCCATAGCAACAA
TTTGACTTGAATGTCAATA
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Coding sequence (CDS) from alignment at H-paniculata_contig5308:9332..13000-

>mRNA_H-paniculata_contig5308.12712.1 ID=mRNA_H-paniculata_contig5308.12712.1|Name=mRNA_H-paniculata_contig5308.12712.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1398bp|location=Sequence derived from alignment at H-paniculata_contig5308:9332..13000- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCTACCGAATTGAACCCGGATGGCTGGGATGCCGGAGAGCCCGTGGT
GGAGGAGCCCGTGGCTGCGACCGATGAAGGTTGGGGAGAGCCCGAGGTGC
CTCAGGCCATGGAGGAGACCGGGATCGCGGACGTGAAGCTTTTCAACAAG
TGATGGCTACCGAATTGAACCCGGATGGCTGGGATGCCGGAGAGCCCGTG
GTGGAGGAGCCCGTGGCTGCGACCGATGAAGGTTGGGGAGAGCCCGAGGT
GCCTCAGGCCATGGAGGAGACCGGGATCGCGGACGTGAAGCTTTTCAACA
AGTGGACATTCGATGACATCGAGATCCGTGACATTTCGTTGGAGGACTAC
ATCGCCGTGAAGGGAAAGTACGCTACTTTCCTTCCGCATACTGCGGGACG
GTACCAAAAGAAGCGTTTCCGTAAGGCAACTGACATTCGATGACATCGAG
ATCCGTGACATTTCGTTGGAGGACTACATCGCCGTGAAGGGAAAGTACGC
TACTTTCCTTCCGCATACTGCGGGACGGTACCAAAAGAAGCGTTTCCGTA
AGGCAACTTGCCCCATCGTGGAGCGTCTTTGCGTGTCGCTTATGCGCAAG
GGGCGCAACAGCGGTAAGAAGCTGATGGCGGCTCGCATCGTGAAGCACAC
CCTGGAGATCATCCACCTTCTTACAGACCAAAACCCGGTTCAGTGCCCCA
TCGTGGAGCGTCTTTGCGTGTCGCTTATGCGCAAGGGGCGCAACAGCGGT
AAGAAGCTGATGGCGGCTCGCATCGTGAAGCACACCCTGGAGATCATCCA
CCTTCTTACAGACCAAAACCCGGTTCAGGTGCTTGTAGATGCCGTGATCA
ACTCCGGCCCTAGGGAAGACTCCACTCGCGTGGGGTCTGCGGGTGTAGTT
CGGCGCCAGGCTGTCGACCTGTCACCCTTCCGCCGTGTTAACCAGGTGCT
TGTAGATGCCGTGATCAACTCCGGCCCTAGGGAAGACTCCACTCGCGTGG
GGTCTGCGGGTGTAGTTCGGCGCCAGGCTGTCGACCTGTCACCCTTCCGC
CGTGTTAACCAGGCGCTATACCTGATCACCACTGGAGCGCGTGAGTCATC
ATTCCGTAACATCAAGACTATCGCTGAGTGCCTCGCGGACGAAATCATCA
ACGCCGCCCGTGGATCTTCGAACTCTTACGCCATCAAGAAGAAGGACGAG
ATCGAGCGTGTAGCAAAGGCTAACCGGTAGGCGCTATACCTGATCACCAC
TGGAGCGCGTGAGTCATCATTCCGTAACATCAAGACTATCGCTGAGTGCC
TCGCGGACGAAATCATCAACGCCGCCCGTGGATCTTCGAACTCTTACGCC
ATCAAGAAGAAGGACGAGATCGAGCGTGTAGCAAAGGCTAACCGGTAG
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