mRNA_H-paniculata_contig5306.12708.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5306.12708.1
Unique NamemRNA_H-paniculata_contig5306.12708.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5306.12708.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5306contigH-paniculata_contig5306:2708..3272 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size565
Cds size339
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5306.12708.1prot_H-paniculata_contig5306.12708.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5306 2819..3157 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930537.098929-UTR-H-paniculata_contig5306:2707..28181622930537.098929-UTR-H-paniculata_contig5306:2707..2818Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5306 2708..2818 +
1691481338.1860876-UTR-H-paniculata_contig5306:2707..28181691481338.1860876-UTR-H-paniculata_contig5306:2707..2818Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5306 2708..2818 +
1622930537.1329792-UTR-H-paniculata_contig5306:3157..32721622930537.1329792-UTR-H-paniculata_contig5306:3157..3272Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5306 3158..3272 +
1691481338.2139606-UTR-H-paniculata_contig5306:3157..32721691481338.2139606-UTR-H-paniculata_contig5306:3157..3272Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5306 3158..3272 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930537.1148665-CDS-H-paniculata_contig5306:2818..31571622930537.1148665-CDS-H-paniculata_contig5306:2818..3157Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5306 2819..3157 +
1691481338.197649-CDS-H-paniculata_contig5306:2818..31571691481338.197649-CDS-H-paniculata_contig5306:2818..3157Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5306 2819..3157 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5306.12708.1

>prot_H-paniculata_contig5306.12708.1 ID=prot_H-paniculata_contig5306.12708.1|Name=mRNA_H-paniculata_contig5306.12708.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=113bp
MKGNCSLCFWDCTSAHPARELSVSRALSRVLLFKYLFLCNCCLFVRPLVE
VIEEFWRSEVRREGWSWLFHDFEWGLLIKLFATCSIVAVPVYVFLQGGVS
VAQEDRGNRCRG*
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mRNA from alignment at H-paniculata_contig5306:2708..3272+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5306.12708.1 ID=mRNA_H-paniculata_contig5306.12708.1|Name=mRNA_H-paniculata_contig5306.12708.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=565bp|location=Sequence derived from alignment at H-paniculata_contig5306:2708..3272+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGAGGATGACTTGAACGCTTGTATTGAAGTCATTTTTTTTTTTGGAAACG
TAAAGTGATTGGTTTCGTTCATATATCTCGCTCTTTAGTTTCCTTGGTCT
AGGTCTTGTGAATGAAGGGGAATTGCTCTCTTTGCTTCTGGGATTGCACA
AGTGCTCATCCAGCTCGGGAGCTGTCTGTTTCTAGAGCTTTGTCACGCGT
TTTGCTTTTCAAGTATTTGTTCCTCTGCAATTGCTGTCTCTTCGTCCGTC
CGCTCGTGGAAGTAATTGAAGAGTTTTGGAGGAGTGAGGTTAGGAGAGAG
GGTTGGTCCTGGTTGTTCCATGATTTTGAGTGGGGTCTGCTCATCAAATT
GTTTGCCACTTGCTCCATTGTTGCCGTTCCTGTATACGTGTTCTTGCAAG
GTGGCGTTAGTGTTGCTCAAGAGGACCGTGGTAACCGTTGTAGAGGGTGA
TTCCGTTTTTACAATCTCCACCGCCACTGTACTGTTTTTTCTTTTTCATT
TCTGGCCGTGCTTTTTCATGGCCTCAAACATCTTAATAACTCTAAGAAAT
GAATTCTACACCTTA
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Coding sequence (CDS) from alignment at H-paniculata_contig5306:2708..3272+

>mRNA_H-paniculata_contig5306.12708.1 ID=mRNA_H-paniculata_contig5306.12708.1|Name=mRNA_H-paniculata_contig5306.12708.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=678bp|location=Sequence derived from alignment at H-paniculata_contig5306:2708..3272+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAGGGGAATTGCTCTCTTTGCTTCTGGGATTGCACAAGTGCTCATCC
AGCTCGGGAGCTGTCTGTTTCTAGAGCTTTGTCACGCGTTTTGCTTTTCA
AGTATTTGTTCCTCTGCAATTGCTGTCTCTTCGTCCGTCCGCTCGTGGAA
GTAATTGAAGAGTTTTGGAGGAGTGAGGTTAGGAGAGAGGGTTGGTCCTG
GTTGTTCCATGATTTTGAGTGGGGTCTGCTCATCAAATTGTTTGCCACTT
GCTCCATTGTTGCCGTTCCTGTATACGTGTTCTTGCAAGGTGGCGTTAGT
GTTGCTCAAGAGGACCGTGGTAACCGTTGTAGAGGGTGAATGAAGGGGAA
TTGCTCTCTTTGCTTCTGGGATTGCACAAGTGCTCATCCAGCTCGGGAGC
TGTCTGTTTCTAGAGCTTTGTCACGCGTTTTGCTTTTCAAGTATTTGTTC
CTCTGCAATTGCTGTCTCTTCGTCCGTCCGCTCGTGGAAGTAATTGAAGA
GTTTTGGAGGAGTGAGGTTAGGAGAGAGGGTTGGTCCTGGTTGTTCCATG
ATTTTGAGTGGGGTCTGCTCATCAAATTGTTTGCCACTTGCTCCATTGTT
GCCGTTCCTGTATACGTGTTCTTGCAAGGTGGCGTTAGTGTTGCTCAAGA
GGACCGTGGTAACCGTTGTAGAGGGTGA
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