mRNA_H-paniculata_contig53040.12704.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig53040.12704.1
Unique NamemRNA_H-paniculata_contig53040.12704.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig53040.12704.1 vs. uniprot
Match: D7FYX5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYX5_ECTSI)

HSP 1 Score: 109 bits (273), Expect = 3.830e-27
Identity = 52/64 (81.25%), Postives = 56/64 (87.50%), Query Frame = 1
Query:   16 ASRTERGQLATPAERGRIEDVIWDLEMRTPIASTATSEALEGRWALAYASEDPTRSSPFFWAFR 207
            A+ T RGQLATPAERGR+EDVIW+LEMRTP+  TATS AL GRWAL YASED TRSSPFFWAFR
Sbjct:  119 AALTGRGQLATPAERGRVEDVIWELEMRTPVEDTATSTALLGRWALVYASEDATRSSPFFWAFR 182          
BLAST of mRNA_H-paniculata_contig53040.12704.1 vs. uniprot
Match: A0A0G4FU97_VITBC (PAP_fibrillin domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4FU97_VITBC)

HSP 1 Score: 68.9 bits (167), Expect = 2.800e-12
Identity = 35/70 (50.00%), Postives = 45/70 (64.29%), Query Frame = 1
Query:    1 QIIVSASRTERGQLATP-AERGRIEDVIWDLEMRTPIASTATSEALEGRWALAYASEDPTRSSPFFWAFR 207
            +++ SA+ + RGQ A   A R   + ++ DLE   P  + ATS  L+G W L YASED TRSSPFFWAFR
Sbjct:   35 ELLESAAASGRGQFALEGASRATFDSILADLEALNPTPAPATSPLLKGTWRLVYASEDVTRSSPFFWAFR 104          
BLAST of mRNA_H-paniculata_contig53040.12704.1 vs. uniprot
Match: A0A7S4FYH2_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4FYH2_9EUGL)

HSP 1 Score: 63.5 bits (153), Expect = 2.810e-10
Identity = 30/69 (43.48%), Postives = 46/69 (66.67%), Query Frame = 1
Query:    1 QIIVSASRTERGQLATPAERGRIEDVIWDLEMRTPIASTATSEALEGRWALAYASEDPTRSSPFFWAFR 207
            +++  A+R +RGQ   P +  +I+++I  LE+   +    T+  L+G+W L +ASED TRSSPFFWAFR
Sbjct:   62 RLLEMAARADRGQTENPQDNTQIKEIIDKLELA--MIGQGTTARLDGKWELVWASEDVTRSSPFFWAFR 128          
BLAST of mRNA_H-paniculata_contig53040.12704.1 vs. uniprot
Match: A0A7S3Z0E7_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3Z0E7_9EUKA)

HSP 1 Score: 59.3 bits (142), Expect = 2.020e-9
Identity = 33/62 (53.23%), Postives = 38/62 (61.29%), Query Frame = 1
Query:   25 TERGQLATPAERGRIEDVIWDLEMRTP-IASTATSEALEGRWALAYASEDPTRSSPFFWAFR 207
            T RG+ A+  ER  I   +  LE+    I+  A S AL G W L YASED TRSSPFFWAFR
Sbjct:   43 TARGRAASDVERSEILRAVAGLELSGEGISDPARSTALNGVWKLVYASEDVTRSSPFFWAFR 104          
BLAST of mRNA_H-paniculata_contig53040.12704.1 vs. uniprot
Match: A0A813JGD2_POLGL (Hypothetical protein (Fragment) n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813JGD2_POLGL)

HSP 1 Score: 60.1 bits (144), Expect = 6.110e-9
Identity = 32/70 (45.71%), Postives = 42/70 (60.00%), Query Frame = 1
Query:    1 QIIVSASRTERGQLATPAERGRIEDVIWDLEMRTPIASTATSEAL-EGRWALAYASEDPTRSSPFFWAFR 207
            Q++ SA+ T RGQ  +P  R     ++  +E   P A+ A+   L EG W L YASED TRSSPFFW +R
Sbjct:   84 QLLASAAATCRGQCGSPLAREGALQLVKAMEALNPTAAPASDTGLLEGDWRLIYASEDVTRSSPFFWGWR 153          
BLAST of mRNA_H-paniculata_contig53040.12704.1 vs. uniprot
Match: A0A7S2GVB3_9DINO (Hypothetical protein (Fragment) n=1 Tax=Alexandrium andersonii TaxID=327968 RepID=A0A7S2GVB3_9DINO)

HSP 1 Score: 57.8 bits (138), Expect = 1.110e-8
Identity = 28/47 (59.57%), Postives = 31/47 (65.96%), Query Frame = 1
Query:   67 IEDVIWDLEMRTPIASTATSEALEGRWALAYASEDPTRSSPFFWAFR 207
            IE  I  LE   P A  A+S  LEG+W L +ASEDPTR SPFFWA R
Sbjct:    8 IEAAIARLESANPTAEPASSPLLEGQWRLVFASEDPTRCSPFFWALR 54          
BLAST of mRNA_H-paniculata_contig53040.12704.1 vs. uniprot
Match: A0A7S2JMT5_9DINO (Hypothetical protein (Fragment) n=1 Tax=Brandtodinium nutricula TaxID=1333877 RepID=A0A7S2JMT5_9DINO)

HSP 1 Score: 58.5 bits (140), Expect = 2.270e-8
Identity = 30/69 (43.48%), Postives = 38/69 (55.07%), Query Frame = 1
Query:    1 QIIVSASRTERGQLATPAERGRIEDVIWDLEMRTPIASTATSEALEGRWALAYASEDPTRSSPFFWAFR 207
            +++  A+ T RGQ      R R   ++  LE   P    A S  LEG W L +A+EDPTR SPFFWA R
Sbjct:   97 ELLELAAATARGQTGDEEVRRRCCRLVARLESANPTLEPARSALLEGDWRLVFATEDPTRCSPFFWALR 165          
BLAST of mRNA_H-paniculata_contig53040.12704.1 vs. uniprot
Match: A0A0G4F7H4_VITBC (PAP_fibrillin domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4F7H4_VITBC)

HSP 1 Score: 54.7 bits (130), Expect = 5.260e-7
Identity = 30/68 (44.12%), Postives = 41/68 (60.29%), Query Frame = 1
Query:    4 IIVSASRTERGQLATPAERGRIEDVIWDLEMRTPIASTATSEALEGRWALAYASEDPTRSSPFFWAFR 207
            I+   +  +RGQ AT A+R  +  +I  LE  +P  +   S  LEG W L Y+ E+PTRSSPF+WA R
Sbjct:   73 IMQIGAACDRGQQATTAQRQDVMAMIERLERLSP--TQEPSRLLEGTWRLVYSGENPTRSSPFWWATR 138          
BLAST of mRNA_H-paniculata_contig53040.12704.1 vs. uniprot
Match: A0A0G4FIY2_VITBC (PAP_fibrillin domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4FIY2_VITBC)

HSP 1 Score: 53.9 bits (128), Expect = 5.740e-7
Identity = 27/69 (39.13%), Postives = 41/69 (59.42%), Query Frame = 1
Query:    1 QIIVSASRTERGQLATPAERGRIEDVIWDLEMRTPIASTATSEALEGRWALAYASEDPTRSSPFFWAFR 207
            Q++   +  +RGQ AT A+R  + +VI  LE      +    + +EG W L Y+S++PTRSSP +WA R
Sbjct:   39 QLLKMVAAFDRGQAATKAQRADVAEVIGQLESLND-DTQPVGKLVEGTWRLVYSSDNPTRSSPLWWATR 106          
BLAST of mRNA_H-paniculata_contig53040.12704.1 vs. uniprot
Match: A0A812V097_9DINO (Hypothetical protein n=1 Tax=Symbiodinium necroappetens TaxID=1628268 RepID=A0A812V097_9DINO)

HSP 1 Score: 54.3 bits (129), Expect = 6.560e-7
Identity = 28/69 (40.58%), Postives = 41/69 (59.42%), Query Frame = 1
Query:    1 QIIVSASRTERGQLATPAERGRIEDVIWDLEMRTPIASTATSEALEGRWALAYASEDPTRSSPFFWAFR 207
            +++ +A+ T RGQ  + A+R     ++  +E   P     T   LEG+W L +ASED TRSSPFFW +R
Sbjct:   38 RLLAAAASTCRGQCGSEADRQGALQLVKAMEALNPTPEP-TKGLLEGKWRLIFASEDVTRSSPFFWGWR 105          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig53040.12704.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
D7FYX5_ECTSI3.830e-2781.25Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A0G4FU97_VITBC2.800e-1250.00PAP_fibrillin domain-containing protein n=1 Tax=Vi... [more]
A0A7S4FYH2_9EUGL2.810e-1043.48Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
A0A7S3Z0E7_9EUKA2.020e-953.23Hypothetical protein (Fragment) n=1 Tax=Lotharella... [more]
A0A813JGD2_POLGL6.110e-945.71Hypothetical protein (Fragment) n=1 Tax=Polarella ... [more]
A0A7S2GVB3_9DINO1.110e-859.57Hypothetical protein (Fragment) n=1 Tax=Alexandriu... [more]
A0A7S2JMT5_9DINO2.270e-843.48Hypothetical protein (Fragment) n=1 Tax=Brandtodin... [more]
A0A0G4F7H4_VITBC5.260e-744.12PAP_fibrillin domain-containing protein n=1 Tax=Vi... [more]
A0A0G4FIY2_VITBC5.740e-739.13PAP_fibrillin domain-containing protein n=1 Tax=Vi... [more]
A0A812V097_9DINO6.560e-740.58Hypothetical protein n=1 Tax=Symbiodinium necroapp... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig53040contigH-paniculata_contig53040:116..331 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score109.4
Seed ortholog evalue7.2e-22
Seed eggNOG ortholog2880.D7FYX5
Hectar predicted targeting categoryother localisation
EggNOG OGs2E0FT@1,2S7WB@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size216
Cds size216
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930536.7915504-CDS-H-paniculata_contig53040:115..3311622930536.7915504-CDS-H-paniculata_contig53040:115..331Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig53040 116..331 +
1691481338.0632415-CDS-H-paniculata_contig53040:115..3311691481338.0632415-CDS-H-paniculata_contig53040:115..331Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig53040 116..331 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig53040.12704.1prot_H-paniculata_contig53040.12704.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig53040 116..331 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig53040.12704.1

>prot_H-paniculata_contig53040.12704.1 ID=prot_H-paniculata_contig53040.12704.1|Name=mRNA_H-paniculata_contig53040.12704.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=72bp
QIIVSASRTERGQLATPAERGRIEDVIWDLEMRTPIASTATSEALEGRWA
LAYASEDPTRSSPFFWAFRFTF
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mRNA from alignment at H-paniculata_contig53040:116..331+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig53040.12704.1 ID=mRNA_H-paniculata_contig53040.12704.1|Name=mRNA_H-paniculata_contig53040.12704.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=216bp|location=Sequence derived from alignment at H-paniculata_contig53040:116..331+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAAATCATCGTTTCGGCATCTCGAACGGAAAGGGGCCAGTTAGCGACGCC GGCGGAGCGCGGACGCATCGAGGACGTGATCTGGGATCTGGAGATGCGCA CGCCGATAGCGTCTACGGCAACCAGCGAAGCCCTCGAAGGCCGGTGGGCC TTGGCGTACGCGAGCGAAGATCCCACGCGCTCCAGCCCGTTCTTTTGGGC GTTCAGGTTCACATTT
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Coding sequence (CDS) from alignment at H-paniculata_contig53040:116..331+

>mRNA_H-paniculata_contig53040.12704.1 ID=mRNA_H-paniculata_contig53040.12704.1|Name=mRNA_H-paniculata_contig53040.12704.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=432bp|location=Sequence derived from alignment at H-paniculata_contig53040:116..331+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAAATCATCGTTTCGGCATCTCGAACGGAAAGGGGCCAGTTAGCGACGCC
GGCGGAGCGCGGACGCATCGAGGACGTGATCTGGGATCTGGAGATGCGCA
CGCCGATAGCGTCTACGGCAACCAGCGAAGCCCTCGAAGGCCGGTGGGCC
TTGGCGTACGCGAGCGAAGATCCCACGCGCTCCAGCCCGTTCTTTTGGGC
GTTCAGGTTCACATTTCAAATCATCGTTTCGGCATCTCGAACGGAAAGGG
GCCAGTTAGCGACGCCGGCGGAGCGCGGACGCATCGAGGACGTGATCTGG
GATCTGGAGATGCGCACGCCGATAGCGTCTACGGCAACCAGCGAAGCCCT
CGAAGGCCGGTGGGCCTTGGCGTACGCGAGCGAAGATCCCACGCGCTCCA
GCCCGTTCTTTTGGGCGTTCAGGTTCACATTT
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