mRNA_H-paniculata_contig12.1267.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig12.1267.1
Unique NamemRNA_H-paniculata_contig12.1267.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig12.1267.1 vs. uniprot
Match: D7G6B4_ECTSI (Rab11B, RAB family GTPase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6B4_ECTSI)

HSP 1 Score: 367 bits (942), Expect = 3.260e-118
Identity = 198/240 (82.50%), Postives = 214/240 (89.17%), Query Frame = 1 
Query:   61 MSSRPSSSLEYDYLFKIVLVGDAAVGKTNLLACYTSQDKRPRADGTVPSFKSDRKTTVGVEFATMVVTHPDGKRIKAQIWDTAGQERYRAITSAHYKRASGALLVFDVSSRSSFENAERVWLRELRNAADSNSSLMDCLVLVGNKIDLPNAEVPEAEQESSASRMGLASSARVSAKTGQGVDKAFERLILRVYEVEHGTGAAGAEQPGAPAPKEVPRGIVLTAASLKPAAPKDKTDIDCC 780
            M+SR  SSLEYDYLFKIVLVGDAAVGKTNLLACYTSQDKR R DGTVPSF+SDRKTTVGVEFATMVVTHPDGKRIKAQIWDTAGQERYRAITS+HYKRASGALLV+DV+SRSSFENAE+VWLREL+NAADSNSSL+D LVLVGNK+DLPNA+V EAEQESSA RMGLASSARVSAKTGQGVDKAFERLILRVYEVEHG G     Q  AP  +  P+GIVL  A+ KP A +DK  ++CC
Sbjct:    1 MASR--SSLEYDYLFKIVLVGDAAVGKTNLLACYTSQDKRQRPDGTVPSFRSDRKTTVGVEFATMVVTHPDGKRIKAQIWDTAGQERYRAITSSHYKRASGALLVYDVTSRSSFENAEKVWLRELKNAADSNSSLLDSLVLVGNKVDLPNADVTEAEQESSAMRMGLASSARVSAKTGQGVDKAFERLILRVYEVEHGRG-----QQAAPPKEAAPKGIVL--ATPKPRAEEDK--LECC 229
[Close]
BLAST of mRNA_H-paniculata_contig12.1267.1 vs. uniprot
Match: A0A6G0WZ29_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WZ29_9STRA)

HSP 1 Score: 219 bits (559), Expect = 2.440e-62
Identity = 125/237 (52.74%), Postives = 162/237 (68.35%), Query Frame = 1 
Query:   88 EYDYLFKIVLVGDAAVGKTNLLACYTSQDKRPRADGTVPS---FKSDRKTTVGVEFATMVVTHPDGKRIKAQIWDTAGQERYRAITSAHYKRASGALLVFDVSSRSSFENAERVWLRELRNAADSNSSLMDCLVLVGNKIDL---PNAEVPEAEQESSASRMGLASSARVSAKTGQGVDKAFERLILRVYEVEHGTGAAGAEQPGAPAPKEVPRGIVLTAASLKPAAPKDKTDIDCC 780
            +YD L+K+VLVGD  VGKTNLLA +T+ +     D +  +   F + RK T+GVEF T ++THP+GKRIKAQIWDTAGQERYRAITS+HY+RA+GAL+V+DVSSRS+F+NA+  WL+ELRN+AD+NS+L+ CL+LVGNKIDL   P+  V   E   +A       S R SAKTGQ V +AFE+L++ VY  +    A   E   APAP      + L+A    PA PK K +  CC
Sbjct:    8 QYDELYKVVLVGDPGVGKTNLLAYFTATEDEMAIDSSTNASKIFSAVRKPTIGVEFGTKIITHPNGKRIKAQIWDTAGQERYRAITSSHYRRAAGALIVYDVSSRSTFDNAQSHWLKELRNSADTNSTLLSCLMLVGNKIDLAKDPSVSVVSQEDHDAAISEAGIMSIRASAKTGQNVVEAFEKLVIEVYNQDKARNAKPEE---APAPS-----VDLSA----PAPPKKKNN--CC 230
[Close]
BLAST of mRNA_H-paniculata_contig12.1267.1 vs. uniprot
Match: A0A024UAY6_9STRA (Uncharacterized protein n=5 Tax=Aphanomyces TaxID=100860 RepID=A0A024UAY6_9STRA)

HSP 1 Score: 219 bits (557), Expect = 4.250e-62
Identity = 114/206 (55.34%), Postives = 152/206 (73.79%), Query Frame = 1 
Query:   88 EYDYLFKIVLVGDAAVGKTNLLACYTSQDKRPRADGTVPS---FKSDRKTTVGVEFATMVVTHPDGKRIKAQIWDTAGQERYRAITSAHYKRASGALLVFDVSSRSSFENAERVWLRELRNAADSNSSLMDCLVLVGNKIDLPNAEV---PEAEQESSASRMGLASSARVSAKTGQGVDKAFERLILRVYEVEHGTGAAGAEQPGA 687
            +YD L+K+VLVGD  VGKTNLLA +T+ D+    D +  +   F + RK T+GVEF T ++THP+GKRIKAQIWDTAGQERYRAITS+HY+RA+GAL+V+DVSSR+SF+NA+  WL+ELRN+AD+NS+L+ CL+LVGNKIDL  A+    PE  + +  +  G+    R SAKTGQ V +AFE+L++ VY  +    A   E+P A
Sbjct:    7 QYDELYKVVLVGDPGVGKTNLLAYFTASDEDMAIDASTNASKIFSNVRKPTIGVEFGTKIITHPNGKRIKAQIWDTAGQERYRAITSSHYRRAAGALIVYDVSSRTSFDNAQGHWLKELRNSADTNSTLLSCLMLVGNKIDLDPADTVVTPEDHESAVLAADGILD-IRASAKTGQNVVEAFEKLVIEVYNQDKARNATPEEKPSA 211
[Close]
BLAST of mRNA_H-paniculata_contig12.1267.1 vs. uniprot
Match: A0A485LBE8_9STRA (Aste57867_18857 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LBE8_9STRA)

HSP 1 Score: 219 bits (557), Expect = 1.170e-61
Identity = 124/237 (52.32%), Postives = 164/237 (69.20%), Query Frame = 1 
Query:   91 YDYLFKIVLVGDAAVGKTNLLACYTSQDKRPRADGTVPS---FKSDRKTTVGVEFATMVVTHPDGKRIKAQIWDTAGQERYRAITSAHYKRASGALLVFDVSSRSSFENAERVWLRELRNAADSNSSLMDCLVLVGNKIDL---PNAEV-PEAEQESSASRMGLASSARVSAKTGQGVDKAFERLILRVYEVEHGTGAAGAEQPGAPAPKEVPRGIVLTAASLKPAAPKDKTDIDCC 780
            YD L+K+VLVGD  VGKTNLLA +T+ D     D +  +   F + RK T+GVEF T ++THP+GKRIKAQIWDTAGQERYRAITS+HY+RA+GAL+V+DVSSR+SF+NA+  WL+ELRN+AD+NS+L+ CL+LVGNKIDL   P+ +V  E + +++ +  G     R SAKTGQ V +AFE+LI+ VY  +    A   + P A A       + L+A    PAA K K +  CC
Sbjct:   36 YDELYKVVLVGDPGVGKTNLLAYFTASDDEMAIDTSTNASKIFSNVRKPTIGVEFGTKIITHPNGKRIKAQIWDTAGQERYRAITSSHYRRAAGALIVYDVSSRTSFDNAQSHWLKELRNSADTNSTLLSCLMLVGNKIDLALDPSVQVVAEEDHDAAVAAAGDVLGTRASAKTGQNVVEAFEKLIIEVYNQDKARNAKPVDVPAAAA-------VDLSA----PAAQKKKNN--CC 259
[Close]
BLAST of mRNA_H-paniculata_contig12.1267.1 vs. uniprot
Match: A0A6S9ECQ7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9ECQ7_HETAK)

HSP 1 Score: 214 bits (544), Expect = 2.570e-60
Identity = 110/188 (58.51%), Postives = 143/188 (76.06%), Query Frame = 1 
Query:   82 SLEYDYLFKIVLVGDAAVGKTNLLACYTSQDKRPRADGTVPSFKSDRKTTVGVEFATMVVTHPDGKRIKAQIWDTAGQERYRAITSAHYKRASGALLVFDVSSRSSFENAERVWLRELRNAADSNSSLMDCLVLVGNKIDLPNAEVP-EAEQESSASRMGLASSARVSAKTGQGVDKAFERLILRVYE 642
            S +YD ++KIVLVGD  VGKTNLL+C+TS  K    +G V SF  +RK TVGVEFA+ +V HP+G RIKAQIWDTAGQERY AIT +HY+RA+GALLV+DV++R SF+NA+  WL+EL+ +ADS SSL++  +L GNKIDL +  V  +AEQ S+A+ +GL+     SA+ G  VD AFE LIL+VY+
Sbjct:   10 SEQYDVMYKIVLVGDPGVGKTNLLSCFTSYRKDTSENGAVVSFNENRKPTVGVEFASWIVKHPNGDRIKAQIWDTAGQERYNAITKSHYRRAAGALLVYDVTNRKSFDNAKNWWLKELKESADSESSLLENTLLCGNKIDLVDKRVVHDAEQASAAAGLGLSMHQSTSAREGTNVDDAFETLILQVYD 197
[Close]
BLAST of mRNA_H-paniculata_contig12.1267.1 vs. uniprot
Match: A0A1W0A2A3_9STRA (Rab11/RabA-family small GTPase n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A2A3_9STRA)

HSP 1 Score: 213 bits (541), Expect = 7.990e-60
Identity = 113/209 (54.07%), Postives = 152/209 (72.73%), Query Frame = 1 
Query:   88 EYDYLFKIVLVGDAAVGKTNLLACYTSQDKRPRADGTVPS---FKSDRKTTVGVEFATMVVTHPDGKRIKAQIWDTAGQERYRAITSAHYKRASGALLVFDVSSRSSFENAERVWLRELRNAADSNSSLMDCLVLVGNKIDLPNAE-----VPEAEQESSASRMGLASSARVSAKTGQGVDKAFERLILRVYEVEHGTGAAGAEQPGAP 690
            +YD L+K+VLVGD  VGKTNLLA +T+ ++    D    +   F + RK T+GVEF T ++THP+GKRIKAQIWDTAGQERYRAITS+HY+RA+GAL+V+DV+S+++FENA+  WL+ELRN+ADSNS+L+ CL+LVGNKIDL  A+     VP  + E++A   G+ +  R SAKTG+ V  AFE+LI+ VY  +    A  A +   P
Sbjct:    3 QYDELYKVVLVGDPGVGKTNLLAYFTATEEEMAMDAETNASKIFSAVRKPTIGVEFGTKIITHPNGKRIKAQIWDTAGQERYRAITSSHYRRAAGALVVYDVTSKATFENAQCHWLKELRNSADSNSTLLSCLMLVGNKIDLVAADNASTIVPPEDHEAAAKAEGVMAM-RASAKTGENVVAAFEQLIIEVYNQDKNRTAPVATESATP 210
[Close]
BLAST of mRNA_H-paniculata_contig12.1267.1 vs. uniprot
Match: A0A067CD03_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CD03_SAPPC)

HSP 1 Score: 212 bits (540), Expect = 1.070e-59
Identity = 110/192 (57.29%), Postives = 143/192 (74.48%), Query Frame = 1 
Query:   88 EYDYLFKIVLVGDAAVGKTNLLACYTSQDKRPRADGTVPSFK----SDRKTTVGVEFATMVVTHPDGKRIKAQIWDTAGQERYRAITSAHYKRASGALLVFDVSSRSSFENAERVWLRELRNAADSNSSLMDCLVLVGNKIDLPN----AEVPEAEQESSASRMGLASSARVSAKTGQGVDKAFERLILRVY 639
            +YD L+K+VLVGD  VGKTNLLA +T+ ++    D +  + K    S RK T+GVEF T ++THP+GKRIKAQIWDTAGQERYRAITS+HY+RA+GAL+V+DVSSR++F+NA+  WL+ELRN+AD+NS+L+ CL+LVGNKIDL      A V  AE+  +A         R SAKTG+ V +AFE LI+ VY
Sbjct:    3 QYDELYKVVLVGDPGVGKTNLLAYFTATEEEMAVDASTNASKIFSSSVRKPTIGVEFGTKIITHPNGKRIKAQIWDTAGQERYRAITSSHYRRAAGALVVYDVSSRATFDNAQTHWLKELRNSADNNSTLLSCLMLVGNKIDLTEGINGAPVVAAEEHDAAMAAAGVHGVRASAKTGENVVQAFENLIIEVY 194
[Close]
BLAST of mRNA_H-paniculata_contig12.1267.1 vs. uniprot
Match: A0A024U937_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U937_9STRA)

HSP 1 Score: 209 bits (533), Expect = 3.590e-59
Identity = 108/187 (57.75%), Postives = 144/187 (77.01%), Query Frame = 1 
Query:   88 EYDYLFKIVLVGDAAVGKTNLLACYTSQDKRPRADGTVPS---FKSDRKTTVGVEFATMVVTHPDGKRIKAQIWDTAGQERYRAITSAHYKRASGALLVFDVSSRSSFENAERVWLRELRNAADSNSSLMDCLVLVGNKIDLPNAEV---PEAEQESSASRMGLASSARVSAKTGQGVDKAFERLIL 630
            +YD L+K+VLVGD  VGKTNLLA +T+ D+    D +  +   F + RK T+GVEF T ++THP+GKRIKAQIWDTAGQERYRAITS+HY+RA+GAL+V+DVSSR+SF+NA+  WL+ELRN+AD+NS+L+ CL+LVGNKIDL  A+    PE  + +  +  G+    R SAKTGQ V +AFE+L++
Sbjct:    7 QYDELYKVVLVGDPGVGKTNLLAYFTASDEDMAIDASTNASKIFSNVRKPTIGVEFGTKIITHPNGKRIKAQIWDTAGQERYRAITSSHYRRAAGALIVYDVSSRTSFDNAQGHWLKELRNSADTNSTLLSCLMLVGNKIDLDPADTVVTPEDHESAVLAADGILD-IRASAKTGQNVVEAFEKLVI 192
[Close]
BLAST of mRNA_H-paniculata_contig12.1267.1 vs. uniprot
Match: A0A7S2XV75_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XV75_9STRA)

HSP 1 Score: 201 bits (511), Expect = 8.100e-56
Identity = 104/185 (56.22%), Postives = 138/185 (74.59%), Query Frame = 1 
Query:   91 YDYLFKIVLVGDAAVGKTNLLACYTSQDKR-PRADGTVPSFKSDRKTTVGVEFATMVVTHPDGKRIKAQIWDTAGQERYRAITSAHYKRASGALLVFDVSSRSSFENAERVWLRELRNAADSNSSLMDCLVLVGNKIDLPNAEVPEAEQESSASRMGLASSARVSAKTGQGVDKAFERLILRVYE 642
            +D  FKIVLVGD  VGKTNLLA YTS  K  P A     ++   RK TVGVEFAT +V HP G RIKAQIWDTAGQERY +I  +HY+RA+GA++V+DV+S+ +FENA+R WL++++++A  +S++M+C+ LVGNK DL  AEV EAE +++ + +GL    R SAKTG  VD+AFE+LI  VY+
Sbjct:   10 FDEQFKIVLVGDPGVGKTNLLAYYTSYRKGDPSA-----TYNEARKPTVGVEFATWIVRHPSGARIKAQIWDTAGQERYNSIVKSHYRRAAGAIVVYDVTSKKTFENAQRFWLQQIQDSASPDSNIMECITLVGNKTDL-QAEVTEAEHQTAMNSLGLPLEGRTSAKTGDNVDEAFEKLICLVYD 188
[Close]
BLAST of mRNA_H-paniculata_contig12.1267.1 vs. uniprot
Match: A0A1V9YMI8_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YMI8_9STRA)

HSP 1 Score: 199 bits (505), Expect = 1.020e-54
Identity = 121/245 (49.39%), Postives = 153/245 (62.45%), Query Frame = 1 
Query:   88 EYDYLFKIVLVGDAAVGKTNLLACYTSQDKRPRADGTVPSFK----------SDRKTTVGVEFATMVVTHPDGKRIKAQIWDTAGQERYRAITSAHYKRASGALLVFDVSSRSSFENAERVWLRELRNAADSNSSLMDCLVLVGNKIDLPN----AEVPEAEQESSASRMGLASSARVSAKTGQGVDKAFERLILRVYEVEHGTGAAGAEQPGAPAPKEVPRGIVLTAASLKPAAPKDKTDIDCC 780
            +YD L+K    GD  VGKTNLLA +T+ ++    D    + K          + RK T+GVEF T +VTHP+GKRIKAQIWDTAGQERYRAITS+HY+RA+GAL+V+DVSSRS+F+NA+  WL+ELRN+ADSNS+L+ CL+LVGNKIDL N    A +  +E   +A+        R SAKTG+ V +AFE LI+ VY  +    A        PAP E    I L A      AP  K    CC
Sbjct:    3 QYDELYK----GDPGVGKTNLLAYFTATEEEMAMDTDTNASKIFRRLQDEESAVRKPTIGVEFGTKIVTHPNGKRIKAQIWDTAGQERYRAITSSHYRRAAGALVVYDVSSRSTFDNAQSHWLKELRNSADSNSTLLSCLMLVGNKIDLANDMSGAAIVSSEDHIAAAAAEGVMGTRASAKTGENVVQAFENLIIEVYNQDKARSA--------PAPVEAAPVIDLGAK-----APTKKKMPACC 230
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12.1267.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G6B4_ECTSI3.260e-11882.50Rab11B, RAB family GTPase n=1 Tax=Ectocarpus silic... [more]
A0A6G0WZ29_9STRA2.440e-6252.74Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A024UAY6_9STRA4.250e-6255.34Uncharacterized protein n=5 Tax=Aphanomyces TaxID=... [more]
A0A485LBE8_9STRA1.170e-6152.32Aste57867_18857 protein n=1 Tax=Aphanomyces stella... [more]
A0A6S9ECQ7_HETAK2.570e-6058.51Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A1W0A2A3_9STRA7.990e-6054.07Rab11/RabA-family small GTPase n=1 Tax=Thraustothe... [more]
A0A067CD03_SAPPC1.070e-5957.29Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A024U937_9STRA3.590e-5957.75Uncharacterized protein n=2 Tax=Aphanomyces invada... [more]
A0A7S2XV75_9STRA8.100e-5656.22Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A1V9YMI8_9STRA1.020e-5449.39Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig12contigH-paniculata_contig12:1195..7436 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score371.3
Seed ortholog evalue3.4e-100
Seed eggNOG ortholog2880.D7G6B4
Hectar predicted targeting categoryother localisation
EggNOG free text desc.GTP binding
EggNOG OGsCOG1100@1,KOG0087@2759
Ec32 ortholog descriptionRab11B, RAB family GTPase
Ec32 orthologEc-10_001230.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons5
Model size2605
Cds size723
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928914.648435-UTR-H-paniculata_contig12:1194..12541622928914.648435-UTR-H-paniculata_contig12:1194..1254Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12 1195..1254 +
1691480665.8645766-UTR-H-paniculata_contig12:1194..12541691480665.8645766-UTR-H-paniculata_contig12:1194..1254Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12 1195..1254 +
1622928914.7709384-UTR-H-paniculata_contig12:5614..74361622928914.7709384-UTR-H-paniculata_contig12:5614..7436Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12 5615..7436 +
1691480665.9237168-UTR-H-paniculata_contig12:5614..74361691480665.9237168-UTR-H-paniculata_contig12:5614..7436Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12 5615..7436 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928914.6821394-CDS-H-paniculata_contig12:1254..13651622928914.6821394-CDS-H-paniculata_contig12:1254..1365Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12 1255..1365 +
1691480665.8765485-CDS-H-paniculata_contig12:1254..13651691480665.8765485-CDS-H-paniculata_contig12:1254..1365Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12 1255..1365 +
1622928914.6996758-CDS-H-paniculata_contig12:1763..18991622928914.6996758-CDS-H-paniculata_contig12:1763..1899Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12 1764..1899 +
1691480665.890104-CDS-H-paniculata_contig12:1763..18991691480665.890104-CDS-H-paniculata_contig12:1763..1899Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12 1764..1899 +
1622928914.71706-CDS-H-paniculata_contig12:3997..40311622928914.71706-CDS-H-paniculata_contig12:3997..4031Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12 3998..4031 +
1691480665.8979745-CDS-H-paniculata_contig12:3997..40311691480665.8979745-CDS-H-paniculata_contig12:3997..4031Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12 3998..4031 +
1622928914.7327685-CDS-H-paniculata_contig12:4326..44841622928914.7327685-CDS-H-paniculata_contig12:4326..4484Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12 4327..4484 +
1691480665.905116-CDS-H-paniculata_contig12:4326..44841691480665.905116-CDS-H-paniculata_contig12:4326..4484Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12 4327..4484 +
1622928914.7507334-CDS-H-paniculata_contig12:5330..56141622928914.7507334-CDS-H-paniculata_contig12:5330..5614Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12 5331..5614 +
1691480665.912614-CDS-H-paniculata_contig12:5330..56141691480665.912614-CDS-H-paniculata_contig12:5330..5614Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12 5331..5614 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig12.1267.1prot_H-paniculata_contig12.1267.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig12 1255..5614 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig12.1267.1

>prot_H-paniculata_contig12.1267.1 ID=prot_H-paniculata_contig12.1267.1|Name=mRNA_H-paniculata_contig12.1267.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=241bp
MSSRPSSSLEYDYLFKIVLVGDAAVGKTNLLACYTSQDKRPRADGTVPSF
KSDRKTTVGVEFATMVVTHPDGKRIKAQIWDTAGQERYRAITSAHYKRAS
GALLVFDVSSRSSFENAERVWLRELRNAADSNSSLMDCLVLVGNKIDLPN
AEVPEAEQESSASRMGLASSARVSAKTGQGVDKAFERLILRVYEVEHGTG
AAGAEQPGAPAPKEVPRGIVLTAASLKPAAPKDKTDIDCC*
back to top

mRNA from alignment at H-paniculata_contig12:1195..7436+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig12.1267.1 ID=mRNA_H-paniculata_contig12.1267.1|Name=mRNA_H-paniculata_contig12.1267.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6242bp|location=Sequence derived from alignment at H-paniculata_contig12:1195..7436+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCTATGGCAGGCTGAGACGTCCAAACGGTTGAGGTTTTTCTCACAGCCTC
CCTGTTGAAGATGTCTTCAAGACCATCCTCGTCGCTGGAGTACGACTACC
TCTTCAAAATCGTGCTCGTCGGAGACGCAGCAGTGGGTAAAACAAACCTG
TTAGCCTGCTATACGTCGCAGGTGTGTGATGTTCTTAAATTTCACTGCTG
GTGCAGGTGCTCTCTCCTTCTCAAATCCATACTCAGCACCACTCCTCTAC
TTTTTTATTAGAATTTACCAATATCGCCGCATAACCGGGTCTACCTTGTG
AAACTGCGCTCTAGCTTCGATTACCTCCCGGTCTAGTGGCGGCGCGGGAG
GACTTTTGCTTAGTCAGGTCATATGTTAAACTGGGAGGTGGGAAACCAAC
CACCTCACCTTTTTCCTTGTGACCTTTATCAGGAGACAGGGGTTGTACCG
CATTTTCGAATGTGTTACAACCGTACCTTCACTCCCTTGAGCGCTCGTGC
AGACTGCATTGTCTGTATGATCTAAATACACATGAAACATACATCTGTAC
ATCACGGCACATACGACAGGACAAGCGGCCAAGAGCGGATGGAACTGTTC
CAAGCTTCAAGTCCGATCGTAAGACGACTGTCGGGGTGGAGTTCGCAACC
ATGGTGGTAACTCATCCGGACGGCAAGCGCATCAAGGCACAAATTTGGGA
CACGGGTGTGTGATCAATACAGTAGAGATGATGAAGCAAAAGTAGAAGGG
CCGTTCCTGGCGCCTAACAGCCGGTGTAAATTTCAAATTTCAGATTTATA
TTGATTTGACATTTGTAGGCCCGGCTGCCTGCATTATGACAAATTTCGAT
GCGCGAGTTTTGACAGTTCCGCGTCGCAAGAGGTGCTTTTTGGCCGGGGG
GGTTACGTAGTGTCGACGGGCACAATTGCTTCGGCCGGGATGAGATCAGA
CCCGTATGTCGACAAACATACCATAGATAGTACAGTTCGATTGCGAACTG
CTTCCGTTGTATATATGTATATACAATATATGAATTTAGAAAGTCCCATC
TCGATGTTACGTGTAACAGGGCACTGGTTTTTTTTCACACTGCCCACGTA
CGTCCAGGGCTTGTTATAGTAGCCGCAACGCCGTGTGCTTGATGTAGATG
GGCTAACAACAACGATGCAATATAATTTCCAGCAAAACATTATGTGCCTT
GCTGGAAATTCTCTTTGTGGTCTGGTTTGTACATTTGTCTGAAATGGCTA
GCAGATGAGCGTCTATAGCAAGCTTATGTAGAGTGTAGTTTTGAATTTTC
TTCTCGACCTTACAGGTTTGCAGTCGAATATGGATCATCTGAAGCAAACA
CATGTCTCGGGTGGATTTTGAATTTATGCAAGACGAACACATCACATTCT
CGGATACGATTGCCTCCTCTACGCTGCTGAGTGAGCTACACAAACACATT
AGCACTTGCCTAGCGTACAAGGAAGCCTATCAGCTCTCCTGCACGACCCA
GCAGACCAGCATAACGTACACCCTCATAAGTACGGTAAGGTATGTGCATG
TGGGGGGAGGTGATTTCAAGCCCTACCTCCTGTGGCACACAATGAAGGGA
AAGACGGGATCTGGCAAGTACCAGCATACCCCGAGAATTCCGCGGTGAGC
GATAACCGCTGCGTGTGTGGCGTCCTGTTATGGGTAATGGCACCCACAGG
CACAGCCGCAGGTTTTCTACCATAGTTGTCCCAGTTGGCACATCTTATAA
TGATTGATGTATCCCTTTGTTGATAATTAGGCGTCGGGGGTTCCTGGAAC
GATGTCGTTTCTTCCAGTCGGCTCTTTTTTTCAGGTGTAAAGGGGTTCAC
CTTCTCACCTTCGGACCTGGTTTCAGGACACAAAATTCATCGGATAGTCT
CGCCCGAAGCGGGTCACGGTTCTTGATAAAGATAGCGCTGTGGCACTGAA
TCAGGCCAACCGCAACGTGTGGGGTAGCGGTACCACAAAGAAAAGCTGCT
AGGAATGGCTCAAACCTCAGTTTGCTCTTAATTTCTAGCTCACATATAAC
ACTCCCAGGCGACCACTTTATTTCGCCGAAAACTTCATCGCCAGCATCAC
TGGTAGGTGTGTATTGGGGGAGGTGATGCGTGGTACACTTCTGCTGTTAA
TATCATGTGGGGTGAGGTGCGGCCGGCTTTAGCATGCTCTGCGAAGGCGA
GAGTCGAACGCCCGTAAAAACTACCTCCCCGTGTTCTTCTCAAATACTGT
ACATATCGAGCGCTAGGGCTCTTGATTTGTAGGGTCGCTTTTCTTAGCTT
CTTAGATTCTCAGCCGCAGTGAATTTTTTCGGTTCTTCGTGTTTCCGACC
ACGATGTCCAGTGTCGCTGTTGTAGTCAACGTTGTTTCGTTTTACGTTCC
CGGGCATGTGGGCGGGGCGGGGCGTAGGCCTGGTCTCTGTTTCCCAGCGC
GTCGGTATGTTGAGATGGCAATCGCTGCGTGCTGCGCATCTGGCCGAGTC
AAAGAAGCAGCGCAACGGTCGCCTCGTATTGAGCCATTCGCAAATATTCT
CTTGGAGGCGAAGAGATGAACAAGTAGTGTGGGTACCAGCCCATGTACGT
ATGGTATCTTCTTTTTTGTTGTTGTAAATACAGTCACTGTATAATCGCAC
TCACCACCCAAGCACCTGGCAATTCATGACCCACGGCAATATTTTTCGCC
CCCTAATTTCCTTGAGGTAATTGACTTTGTGAATCATGTGCTGCTCTTGT
CACTCTTCCGCTCTTCTCGTTCGGTGCCGCCCCCCACCTCCGCACTTGTC
CAGCTGGCCAAGAGAGATACAGGGCCATCACGAGCGCGTGAGTCCCTCTG
ATTTTTCTCGCATCTTTTCTTGTTGCGAACCAAGGGATTGTATTCCCTCG
GACACTATCGATGATCAATTCATTGATTGATTCATTGACTCCATCAGGTG
AAGTTGCGGGCATGCCTCTCTGACGTTTCGGAGATGGCCATTTACTGGCT
CACTTGTGTTGCCGCATTCTATCTAGCTGCTGGCAAGGCATCGCGCTATC
CCGCTCCGTAGAGGTAGTCTACCCAATGCCGACACGTAGATGACTTTTGT
CAATCTTTTTGCTTTTGTTTTCGATCGTGCAGGCACTACAAGAGGGCGTC
CGGGGCCCTACTGGTGTTCGATGTGTCAAGTAGATCCAGCTTTGAAAATG
CAGAACGAGTGTGGCTGCGAGAGTTGAGGAACGCAGCTGACTCCAATAGC
AGTCTCATGGACTGTCTTGTGCTCGTAGGCAACAAAATTGGTGAGCGTCT
GTAGGCACTAGTACCAAATAAACCGCTCGGCTACGAAAAATTAAATATTG
TTCAAGAAACTGTGCGGTTGAATGATTAAGCGTGGCTGAAAACAAGAGTG
AGAGATATTGTGATCTGTTGTACCAAAGAAGGTCTATCGTAATGCGTAGG
TGGCATGTTCAAATTGAGGGCAACTGTTGCAGGTGTATGATGAATGCATC
GTAGAAACAATTTCCTCCTAGATGTTGGTACTTTCAGGCGCAAACTCAGG
CTGACGTTTAAAAGGCCGTCACACTACAAAAGCAGTACCAGCTTACTGCC
CGTCCACTGCTCTCGTATTCAATATGTTGGACTTGTATAAGAAATAGACC
CGAAAACAATGGGATTCCTCCATGTGTCCTTTTTTCCCCGCCTTCTCCGT
TTTTTATCAAGTCCAACTTACTGAGGATGTAGTGAATATTTACTGGGTAT
TTACTGGTACTGTACTCCGACGACCTTTGTAACTTCTCTTTCGGTAGTTA
CCGACTACACGTTTCTGAAACGTGCGACTGTCAAAATTCGTGTCTCGTTT
GCTGCTCGATTAATGCAGCACATGCCCACATTGAAAGTTTTACGTCGCCT
GTCGCTTGAGTCTACTGCGACACATTAGGGATGTGGCCTACAGGTATTCT
ATTTAAACCGGAAGTACGTTGTCAATCGACCAAGACCTGGAAAGATAAAT
CGCTATTATAAGTACCCATATTTTCCCCCACATTGCTGACCTCTCGTGCA
GTCGGGGCTCTCGGCCTCTTCCTGATTTTTTGTTTTTGCCCTGTATTCAT
TCCACAGTTTGGTTTTTTCCCTCTTGCATTCATCAGATCTGCCTAACGCA
GAGGTGCCCGAAGCAGAGCAAGAAAGCAGCGCGTCGCGAATGGGTCTAGC
TTCTTCCGCTCGTGTTTCTGCCAAGACCGGACAGGGCGTGGACAAGGCAT
TCGAGCGCCTGATTTTGCGCGTGTACGAAGTGGAGCACGGTACGGGTGCT
GCCGGTGCTGAGCAGCCTGGTGCACCGGCGCCTAAGGAGGTGCCGAGGGG
GATAGTATTGACGGCGGCTTCTCTTAAACCCGCAGCGCCAAAGGATAAAA
CTGACATTGATTGCTGCTAAGGGGAAGCGAAGCTTTCCGCAATCGATGCG
TTGCGTTGTTTGTGGGTGTCATACAGACGTAGGTGGTTTAATTTTTATTA
TATGCTGGAAGGAAGGCCTGTCCGCGGCACCCGCACGAAACATCTTTCCA
GGCAGGTGGAGGGAGGAGAGTTATGGACGTCGATTGCGTTGCATTGTTTC
CGGCTAATGTAAGAGGCGCGCGACGGTGCGTAGGGTGTTCGCGTGGTTGT
CTTCAGTTTTAGTGTCGGCATGATGGATGGTGCGTTGCCGGTCGACCACC
GACTCCCGTCCTTGGTGTTTATTTTCGCAGACATTTGCTGTGTCTTGTGT
CGTCTCTCTCCTTTCCTTTTCACGCTTTGATATTGTAGCGCTTTTTTATG
TACAGTATTGTTATTGTTTCCTGCACAAGGTGTCTAGTCTCTCGATGTTG
TACAACTATCGGTGGGTGTAAAAATTCGAAGCCTCCGACGTTTTGTTGCA
TTCCCCAAGCGGGCCGGGTGAATACTCCGCAGGTTTTCGGGTTCTCGTTA
TTGTCCCCGTTGCTACTGTCGTAGCTAGAGGGCAAAGAGTTGTCGTGATG
AGGCGATTACGGGGCCGTCATGTACCACGCATAACGTGGGCACGTGAACT
GATGACGGGTGAACGATTGTAGTGGCGATGTCGTTTTCTTGTTGTGACAT
TCGATAGAACCCGCGTTCGATCGACCTCAGCAGTGCCTTTCATGGACGAT
TTTGATCACTATATTTCTGAATATGGTACACATTCGATTTCGTCGTCTAA
GAGGGAGGGAGGTTCGATCGCATTTTCTGGTGTCATTTTCATGCACTACG
GACGAGTACAAGTAATTGCCCACATCCTTTCGTTTTTTACCCGCATCGAT
CGCAGCGGTATTGAACTCCATGTCCCATCTCTGGGATATGTGGCAGATTG
GCTGCGGCTTGTGTTGTGTCTCCGCACCCCAGCTGTTGAAGGCTTGCTGA
GTGCGTTTTTGAAGAGTACATATTTTCAAGGTCCTTGTATCCGACGGCGG
CGGTGTCCCCTATTTTTTCTGATTGATCAGTACGTGCCCGCGCGGGCGGT
CATGACAGAAGATGGGAACGGAACGCATCTTTGTCGCTTAGTTTGCCTTT
TTTTATTTTCCCAACAAATGTATACCAGTAGCCCTATGCATTTACTCATA
ATATGTGTCAACTTTGTTTTCAGTAGCTCGGTGCGTTTACACAGGGTTTT
ACCATAGCATAAAGTAGCATCTTTGCCACAATAGGGCCGTCACACTCCCA
CTCTTCATGATACCACCACGGCATCACCTCACGGTGATTCTGGAGTTGGT
GAAAATCTCACTGCTGTCGCTTCAGAATCACCTTGAGGCTTTGTAAAGAA
ATATTATGTTGAGGAATCGATAGTTTTTCCAGGAATAATCGGATCCCCAG
GGGCGGATAAAAGTGCGCATCACTTGAAAGGTTGGAGTTAAGGATGCAAG
TTTGAGCAAGAAGATGGAGTGGCGGACGCATAACGTGGCTTCCGGGGGAA
GGAGTGCCCTGTGCAGTAGTTCGTGAGGTCAAGACTCGTGTGCTTGTCGC
GTTGCTTCATGAAAAATTAAAAAAGGACAAAGTGAAAGGTCGGTCGCATT
ACACCGCAGAAAATCTGTCTTCGACAGAGATGGAGTTGTCCGCAGTTTTG
AGATTAGTCAATTATTCTCAAGTTTTCTTCTGATTGGTGGAACAAACACG
ACCAACTTAGGGCGTCCAAGTCGTTCGTTCAATTTCGGGGTATTCATTTT
TCGTGATAGATGAAGTGGTTCAAGAATTTCACCAAATTATCT
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig12:1195..7436+

>mRNA_H-paniculata_contig12.1267.1 ID=mRNA_H-paniculata_contig12.1267.1|Name=mRNA_H-paniculata_contig12.1267.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1446bp|location=Sequence derived from alignment at H-paniculata_contig12:1195..7436+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCTTCAAGACCATCCTCGTCGCTGGAGTACGACTACCTCTTCAAAAT
CGTGCTCGTCGGAGACGCAGCAGTGGGTAAAACAAACCTGTTAGCCTGCT
ATACGTCGCAGATGTCTTCAAGACCATCCTCGTCGCTGGAGTACGACTAC
CTCTTCAAAATCGTGCTCGTCGGAGACGCAGCAGTGGGTAAAACAAACCT
GTTAGCCTGCTATACGTCGCAGGACAAGCGGCCAAGAGCGGATGGAACTG
TTCCAAGCTTCAAGTCCGATCGTAAGACGACTGTCGGGGTGGAGTTCGCA
ACCATGGTGGTAACTCATCCGGACGGCAAGCGCATCAAGGCACAAATTTG
GGACACGGGACAAGCGGCCAAGAGCGGATGGAACTGTTCCAAGCTTCAAG
TCCGATCGTAAGACGACTGTCGGGGTGGAGTTCGCAACCATGGTGGTAAC
TCATCCGGACGGCAAGCGCATCAAGGCACAAATTTGGGACACGGCTGGCC
AAGAGAGATACAGGGCCATCACGAGCGCCTGGCCAAGAGAGATACAGGGC
CATCACGAGCGCGCACTACAAGAGGGCGTCCGGGGCCCTACTGGTGTTCG
ATGTGTCAAGTAGATCCAGCTTTGAAAATGCAGAACGAGTGTGGCTGCGA
GAGTTGAGGAACGCAGCTGACTCCAATAGCAGTCTCATGGACTGTCTTGT
GCTCGTAGGCAACAAAATTGGCACTACAAGAGGGCGTCCGGGGCCCTACT
GGTGTTCGATGTGTCAAGTAGATCCAGCTTTGAAAATGCAGAACGAGTGT
GGCTGCGAGAGTTGAGGAACGCAGCTGACTCCAATAGCAGTCTCATGGAC
TGTCTTGTGCTCGTAGGCAACAAAATTGATCTGCCTAACGCAGAGGTGCC
CGAAGCAGAGCAAGAAAGCAGCGCGTCGCGAATGGGTCTAGCTTCTTCCG
CTCGTGTTTCTGCCAAGACCGGACAGGGCGTGGACAAGGCATTCGAGCGC
CTGATTTTGCGCGTGTACGAAGTGGAGCACGGTACGGGTGCTGCCGGTGC
TGAGCAGCCTGGTGCACCGGCGCCTAAGGAGGTGCCGAGGGGGATAGTAT
TGACGGCGGCTTCTCTTAAACCCGCAGCGCCAAAGGATAAAACTGACATT
GATTGCTGCTAAATCTGCCTAACGCAGAGGTGCCCGAAGCAGAGCAAGAA
AGCAGCGCGTCGCGAATGGGTCTAGCTTCTTCCGCTCGTGTTTCTGCCAA
GACCGGACAGGGCGTGGACAAGGCATTCGAGCGCCTGATTTTGCGCGTGT
ACGAAGTGGAGCACGGTACGGGTGCTGCCGGTGCTGAGCAGCCTGGTGCA
CCGGCGCCTAAGGAGGTGCCGAGGGGGATAGTATTGACGGCGGCTTCTCT
TAAACCCGCAGCGCCAAAGGATAAAACTGACATTGATTGCTGCTAA
back to top