mRNA_H-paniculata_contig53010.12700.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig53010.12700.1
Unique NamemRNA_H-paniculata_contig53010.12700.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig53010.12700.1 vs. uniprot
Match: D8LLY8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLY8_ECTSI)

HSP 1 Score: 210 bits (535), Expect = 6.160e-67
Identity = 104/111 (93.69%), Postives = 107/111 (96.40%), Query Frame = 1 
Query:    1 QGNYLQALECMERGLVLRQHFFGSDSDEVWCACKIVGEMCNLLAMTYLQQEDFGMVLELLKKAEILTERDEAGRAVTYNNLACYYRRRGKLHGALQYLQKALKIEAKMVSR 333
            QG+YLQALECMERGLVLRQHFFGSDS+EVW ACKIVGEMCNLLAMTYLQQEDFGMVLELLKKAEILTERD+AGRAVTYNNLACYYRRRGKLH ALQYL KALKIEAKM SR
Sbjct:   24 QGDYLQALECMERGLVLRQHFFGSDSEEVWSACKIVGEMCNLLAMTYLQQEDFGMVLELLKKAEILTERDDAGRAVTYNNLACYYRRRGKLHSALQYLHKALKIEAKMGSR 134
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BLAST of mRNA_H-paniculata_contig53010.12700.1 vs. uniprot
Match: A0A7S2CPG4_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CPG4_9STRA)

HSP 1 Score: 200 bits (509), Expect = 3.950e-62
Identity = 97/108 (89.81%), Postives = 103/108 (95.37%), Query Frame = 1 
Query:    1 QGNYLQALECMERGLVLRQHFFGSDSDEVWCACKIVGEMCNLLAMTYLQQEDFGMVLELLKKAEILTERDEAGRAVTYNNLACYYRRRGKLHGALQYLQKALKIEAKM 324
            QGNYL+ALECMERGLVLRQHFFG+DSDEVW ACK+VGEMCNLLAMTYLQQEDF MVLELLKKAEILTERD AGRAVT+NNLACYYRR+GKLH ALQYLQKALKIE K+
Sbjct:   27 QGNYLEALECMERGLVLRQHFFGADSDEVWRACKVVGEMCNLLAMTYLQQEDFAMVLELLKKAEILTERDNAGRAVTFNNLACYYRRQGKLHAALQYLQKALKIENKL 134
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BLAST of mRNA_H-paniculata_contig53010.12700.1 vs. uniprot
Match: A0A836CET2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CET2_9STRA)

HSP 1 Score: 197 bits (502), Expect = 3.380e-61
Identity = 97/111 (87.39%), Postives = 103/111 (92.79%), Query Frame = 1 
Query:    1 QGNYLQALECMERGLVLRQHFFGSDSDEVWCACKIVGEMCNLLAMTYLQQEDFGMVLELLKKAEILTERDEAGRAVTYNNLACYYRRRGKLHGALQYLQKALKIEAKMVSR 333
            QGNYL+ALECMERGLVLRQHFFGSDSDEVW ACK VGEMCNLLAMTYLQQEDF MVLELLKKAEILTERD  G+AVT NNLACYYRR+GKLH ALQYLQ+ALKIEA++ SR
Sbjct:   25 QGNYLEALECMERGLVLRQHFFGSDSDEVWRACKTVGEMCNLLAMTYLQQEDFAMVLELLKKAEILTERDAVGKAVTLNNLACYYRRQGKLHAALQYLQRALKIEARLGSR 135
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BLAST of mRNA_H-paniculata_contig53010.12700.1 vs. uniprot
Match: A0A7S1CBS2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CBS2_9STRA)

HSP 1 Score: 192 bits (489), Expect = 8.180e-61
Identity = 91/108 (84.26%), Postives = 103/108 (95.37%), Query Frame = 1 
Query:    1 QGNYLQALECMERGLVLRQHFFGSDSDEVWCACKIVGEMCNLLAMTYLQQEDFGMVLELLKKAEILTERDEAGRAVTYNNLACYYRRRGKLHGALQYLQKALKIEAKM 324
            +G YL+ALECMERGLVLRQHFFG+DS+EVW ACK VGEMCNLLAMTYLQQEDFGMVLELLKKA+ILTERDEAGRAVT+NNLACYYRR+GKLH +L YLQKAL+IE+++
Sbjct:   28 EGKYLEALECMERGLVLRQHFFGADSEEVWRACKTVGEMCNLLAMTYLQQEDFGMVLELLKKADILTERDEAGRAVTFNNLACYYRRQGKLHASLSYLQKALRIESRL 135
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BLAST of mRNA_H-paniculata_contig53010.12700.1 vs. uniprot
Match: A0A7S2RTK0_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RTK0_9STRA)

HSP 1 Score: 197 bits (501), Expect = 8.750e-61
Identity = 96/108 (88.89%), Postives = 102/108 (94.44%), Query Frame = 1 
Query:    1 QGNYLQALECMERGLVLRQHFFGSDSDEVWCACKIVGEMCNLLAMTYLQQEDFGMVLELLKKAEILTERDEAGRAVTYNNLACYYRRRGKLHGALQYLQKALKIEAKM 324
            QGNYL+ALECMERGLVLRQHFFG++SDEVW ACK VGEMCNLLAMTYLQQEDF MVLELLKKAEILTERD AGRAVT+NNLACYYRR+GKLH ALQYLQ ALKIEAK+
Sbjct:   35 QGNYLEALECMERGLVLRQHFFGAESDEVWRACKTVGEMCNLLAMTYLQQEDFAMVLELLKKAEILTERDPAGRAVTFNNLACYYRRQGKLHSALQYLQNALKIEAKL 142
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BLAST of mRNA_H-paniculata_contig53010.12700.1 vs. uniprot
Match: A0A7S3YLC4_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YLC4_HETAK)

HSP 1 Score: 197 bits (501), Expect = 1.220e-60
Identity = 95/108 (87.96%), Postives = 103/108 (95.37%), Query Frame = 1 
Query:    1 QGNYLQALECMERGLVLRQHFFGSDSDEVWCACKIVGEMCNLLAMTYLQQEDFGMVLELLKKAEILTERDEAGRAVTYNNLACYYRRRGKLHGALQYLQKALKIEAKM 324
            QGNYL+ALECMERGLVLRQHFFG++S+EVW ACK VGEMCNLLAMTYLQQEDF MVLELLKKAEILTERD+ G+AVTYNNLACYYRR+GKLH ALQYLQKALKIE+KM
Sbjct:   83 QGNYLEALECMERGLVLRQHFFGAESEEVWRACKTVGEMCNLLAMTYLQQEDFAMVLELLKKAEILTERDQKGKAVTYNNLACYYRRQGKLHSALQYLQKALKIESKM 190
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BLAST of mRNA_H-paniculata_contig53010.12700.1 vs. uniprot
Match: A0A7S3HH21_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HH21_9STRA)

HSP 1 Score: 194 bits (493), Expect = 1.540e-59
Identity = 94/106 (88.68%), Postives = 100/106 (94.34%), Query Frame = 1 
Query:    1 QGNYLQALECMERGLVLRQHFFGSDSDEVWCACKIVGEMCNLLAMTYLQQEDFGMVLELLKKAEILTERDEAGRAVTYNNLACYYRRRGKLHGALQYLQKALKIEA 318
            QGNYL+ALECMERGLVLRQHFFG+DS EVW ACK VGEMCNLLAMTYLQQEDF MVLELLKKAEILTE+DEAGRA T+NNLACYYRR+GKLH ALQYLQKALKIE+
Sbjct:   23 QGNYLEALECMERGLVLRQHFFGADSPEVWKACKTVGEMCNLLAMTYLQQEDFNMVLELLKKAEILTEKDEAGRAATFNNLACYYRRQGKLHAALQYLQKALKIES 128
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BLAST of mRNA_H-paniculata_contig53010.12700.1 vs. uniprot
Match: A0A7S4A6K0_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A6K0_9STRA)

HSP 1 Score: 192 bits (487), Expect = 7.440e-59
Identity = 94/109 (86.24%), Postives = 100/109 (91.74%), Query Frame = 1 
Query:    4 GNYLQALECMERGLVLRQHFFGSDSDEVWCACKIVGEMCNLLAMTYLQQEDFGMVLELLKKAEILTERDEAGRAVTYNNLACYYRRRGKLHGALQYLQKALKIEAKMVS 330
            G YL+ALECMERGLVLRQHFFG+ SDEVW ACK VGEMCNLLAMTYLQQEDF MVLELLKKAEILTERD AGRAVT+NNLACYYRR+GKLH ALQYLQKALKIE ++ S
Sbjct:   36 GQYLEALECMERGLVLRQHFFGAGSDEVWRACKTVGEMCNLLAMTYLQQEDFAMVLELLKKAEILTERDPAGRAVTFNNLACYYRRQGKLHAALQYLQKALKIEGRLES 144
[Close]
BLAST of mRNA_H-paniculata_contig53010.12700.1 vs. uniprot
Match: A0A7S1XJL3_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XJL3_9STRA)

HSP 1 Score: 189 bits (481), Expect = 5.310e-56
Identity = 89/108 (82.41%), Postives = 102/108 (94.44%), Query Frame = 1 
Query:    4 GNYLQALECMERGLVLRQHFFGSDSDEVWCACKIVGEMCNLLAMTYLQQEDFGMVLELLKKAEILTERDEAGRAVTYNNLACYYRRRGKLHGALQYLQKALKIEAKMV 327
            GNYL+ALECMERGLVLRQHFFGSDS+EVW AC+ VGEMCNLLAMTYLQQ+D+ MVLELLKKAEILTERD+ GRAVT+NN ACYYRR+GKLH ALQ+LQKAL+IE+++V
Sbjct:  135 GNYLEALECMERGLVLRQHFFGSDSNEVWSACRTVGEMCNLLAMTYLQQQDYAMVLELLKKAEILTERDDKGRAVTFNNFACYYRRQGKLHAALQFLQKALRIESRLV 242
[Close]
BLAST of mRNA_H-paniculata_contig53010.12700.1 vs. uniprot
Match: A0A2R5G2B1_9STRA (Clustered mitochondria protein-like n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G2B1_9STRA)

HSP 1 Score: 190 bits (483), Expect = 7.970e-54
Identity = 91/108 (84.26%), Postives = 99/108 (91.67%), Query Frame = 1 
Query:    1 QGNYLQALECMERGLVLRQHFFGSDSDEVWCACKIVGEMCNLLAMTYLQQEDFGMVLELLKKAEILTERDEAGRAVTYNNLACYYRRRGKLHGALQYLQKALKIEAKM 324
            QG YL+ALECMERGLVLRQHFFG  SDEVW ACK VG+MCNLLAMTYLQQE+F MVLELLKKAEILTERDE GRAVTYNNLACY+RR GKLH ALQYLQKALK+E+++
Sbjct:  462 QGKYLEALECMERGLVLRQHFFGPSSDEVWAACKTVGQMCNLLAMTYLQQEEFSMVLELLKKAEILTERDEHGRAVTYNNLACYFRRTGKLHAALQYLQKALKVESRL 569
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig53010.12700.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LLY8_ECTSI6.160e-6793.69Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2CPG4_9STRA3.950e-6289.81Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A836CET2_9STRA3.380e-6187.39Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S1CBS2_9STRA8.180e-6184.26Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A7S2RTK0_9STRA8.750e-6188.89Hypothetical protein n=2 Tax=Rhizochromulina marin... [more]
A0A7S3YLC4_HETAK1.220e-6087.96Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S3HH21_9STRA1.540e-5988.68Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7S4A6K0_9STRA7.440e-5986.24Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S1XJL3_9STRA5.310e-5682.41Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A2R5G2B1_9STRA7.970e-5484.26Clustered mitochondria protein-like n=1 Tax=Hondae... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig53010contigH-paniculata_contig53010:335..685 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score193.4
Seed ortholog evalue5.6e-47
Seed eggNOG ortholog2880.D8LLY8
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Tetratricopeptide repeat
EggNOG OGs28ZWJ@1,2R6RA@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size351
Cds size321
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930536.4738064-CDS-H-paniculata_contig53010:334..6551622930536.4738064-CDS-H-paniculata_contig53010:334..655Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig53010 335..655 -
1691481337.9282115-CDS-H-paniculata_contig53010:334..6551691481337.9282115-CDS-H-paniculata_contig53010:334..655Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig53010 335..655 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930536.4891853-UTR-H-paniculata_contig53010:655..6851622930536.4891853-UTR-H-paniculata_contig53010:655..685Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig53010 656..685 -
1691481337.9390352-UTR-H-paniculata_contig53010:655..6851691481337.9390352-UTR-H-paniculata_contig53010:655..685Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig53010 656..685 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig53010.12700.1prot_H-paniculata_contig53010.12700.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig53010 335..655 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig53010.12700.1

>prot_H-paniculata_contig53010.12700.1 ID=prot_H-paniculata_contig53010.12700.1|Name=mRNA_H-paniculata_contig53010.12700.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=107bp
MERGLVLRQHFFGSDSDEVWCACKIVGEMCNLLAMTYLQQEDFGMVLELL
KKAEILTERDEAGRAVTYNNLACYYRRRGKLHGALQYLQKALKIEAKMVS
RSTGKK*
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mRNA from alignment at H-paniculata_contig53010:335..685-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig53010.12700.1 ID=mRNA_H-paniculata_contig53010.12700.1|Name=mRNA_H-paniculata_contig53010.12700.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=351bp|location=Sequence derived from alignment at H-paniculata_contig53010:335..685- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGGGAACTACCTTCAGGCACTGGAGTGTATGGAGCGAGGGCTTGTCCT
CCGGCAACATTTCTTTGGTAGCGACAGCGATGAGGTGTGGTGCGCTTGCA
AGATCGTGGGTGAAATGTGCAACCTCCTCGCTATGACCTATCTACAGCAA
GAAGACTTCGGAATGGTGCTCGAGCTCCTCAAGAAAGCCGAGATATTGAC
TGAGAGGGACGAAGCTGGGCGAGCAGTAACATACAATAACCTAGCGTGCT
ACTACCGGCGACGCGGAAAGCTGCACGGCGCGTTGCAGTACCTTCAAAAG
GCACTCAAGATTGAGGCCAAAATGGTGAGTCGCTCGACCGGGAAAAAATA
G
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Coding sequence (CDS) from alignment at H-paniculata_contig53010:335..685-

>mRNA_H-paniculata_contig53010.12700.1 ID=mRNA_H-paniculata_contig53010.12700.1|Name=mRNA_H-paniculata_contig53010.12700.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=642bp|location=Sequence derived from alignment at H-paniculata_contig53010:335..685- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGCGAGGGCTTGTCCTCCGGCAACATTTCTTTGGTAGCGACAGCGA
TGAGGTGTGGTGCGCTTGCAAGATCGTGGGTGAAATGTGCAACCTCCTCG
CTATGACCTATCTACAGCAAGAAGACTTCGGAATGGTGCTCGAGCTCCTC
AAGAAAGCCGAGATATTGACTGAGAGGGACGAAGCTGGGCGAGCAGTAAC
ATACAATAACCTAGCGTGCTACTACCGGCGACGCGGAAAGCTGCACGGCG
CGTTGCAGTACCTTCAAAAGGCACTCAAGATTGAGGCCAAAATGGTGAGT
CGCTCGACCGGGAAAAAATAGATGGAGCGAGGGCTTGTCCTCCGGCAACA
TTTCTTTGGTAGCGACAGCGATGAGGTGTGGTGCGCTTGCAAGATCGTGG
GTGAAATGTGCAACCTCCTCGCTATGACCTATCTACAGCAAGAAGACTTC
GGAATGGTGCTCGAGCTCCTCAAGAAAGCCGAGATATTGACTGAGAGGGA
CGAAGCTGGGCGAGCAGTAACATACAATAACCTAGCGTGCTACTACCGGC
GACGCGGAAAGCTGCACGGCGCGTTGCAGTACCTTCAAAAGGCACTCAAG
ATTGAGGCCAAAATGGTGAGTCGCTCGACCGGGAAAAAATAG
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