mRNA_H-paniculata_contig5301.12699.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5301.12699.1
Unique NamemRNA_H-paniculata_contig5301.12699.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig5301.12699.1 vs. uniprot
Match: D7FKK8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKK8_ECTSI)

HSP 1 Score: 108 bits (271), Expect = 4.940e-27
Identity = 57/114 (50.00%), Postives = 74/114 (64.91%), Query Frame = 2 
Query:    2 NATIREACES----QVQAAATGNIRDFHY--WEHDLDMESYTK--VGEGDFTVGTYCEQGLMDHQGCVQLNGRARSVLERLEVPVVDAGRFVEGQKWATNRSDGRHFRPLVPLE 319
            NATIR  C+     QV+AA+ GN  DF Y  W    D+  Y     G+G FTV TYCE+ ++D +G +Q++ RAR V+ RL VPVVDA + VEGQ WA+  +DGRHF  LVP+E
Sbjct:   28 NATIRAECQREDNVQVRAASVGNPGDFRYSDWHGKPDIAEYITHPEGQGLFTVDTYCEEAILDRRGSLQMSRRARPVMSRLGVPVVDAAKIVEGQGWASPANDGRHFHKLVPIE 141
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BLAST of mRNA_H-paniculata_contig5301.12699.1 vs. uniprot
Match: D7FJP0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJP0_ECTSI)

HSP 1 Score: 113 bits (283), Expect = 9.700e-27
Identity = 60/131 (45.80%), Postives = 79/131 (60.31%), Query Frame = 2 
Query:    2 NATIREACESQ--VQAAATGNIRDFHY------WEHDLDMESYTKV--GEGDFTVGTYCEQGLMDHQGCVQLNGRARSVLERLEVPVVDAGRFVEGQKWATNRSDGRHFRPLVPLELWALLDALTSPPPPP 364
            N TIR  C+ Q   Q     +++D H       W    D+  Y     G+G FTV TYCE+ ++D +G +QL+ RAR V+ RL VP+VDA R VEGQ WA+N SDGRHF  +VP+E+  LL  L +PP PP
Sbjct:  163 NTTIRAECQDQNNTQVKQAASVKDAHGDFSYSDWHGAPDIAEYMVYPEGQGLFTVDTYCEEAILDRRGSLQLSRRARPVMSRLGVPLVDAARIVEGQGWASNPSDGRHFHKIVPIEVVDLLSVLGAPPAPP 293
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BLAST of mRNA_H-paniculata_contig5301.12699.1 vs. uniprot
Match: D7FJN9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJN9_ECTSI)

HSP 1 Score: 107 bits (266), Expect = 2.890e-24
Identity = 56/114 (49.12%), Postives = 73/114 (64.04%), Query Frame = 2 
Query:    2 NATIREACES----QVQAAATGNIRDFHY--WEHDLDMESYTK--VGEGDFTVGTYCEQGLMDHQGCVQLNGRARSVLERLEVPVVDAGRFVEGQKWATNRSDGRHFRPLVPLE 319
            NATIR  C+     QV+AA+ GN  DF Y  W    D+  Y     G+G FTV TYCE+ ++D +G + ++ RAR V+ RL VPVVDA + VEGQ WA+  +DGRHF  LVP+E
Sbjct:  244 NATIRAECQREDNVQVRAASVGNPGDFRYSDWHGKPDIAEYITHPEGQGLFTVDTYCEEAILDRRGSLHMSRRARPVMSRLGVPVVDAAKIVEGQGWASPANDGRHFHKLVPIE 357
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5301.12699.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FKK8_ECTSI4.940e-2750.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FJP0_ECTSI9.700e-2745.80Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FJN9_ECTSI2.890e-2449.12Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5301contigH-paniculata_contig5301:8534..12751 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size576
Cds size381
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5301.12699.1prot_H-paniculata_contig5301.12699.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5301 11650..12650 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930536.3571644-UTR-H-paniculata_contig5301:8533..85671622930536.3571644-UTR-H-paniculata_contig5301:8533..8567Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5301 8534..8567 +
1691481337.8762305-UTR-H-paniculata_contig5301:8533..85671691481337.8762305-UTR-H-paniculata_contig5301:8533..8567Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5301 8534..8567 +
1622930536.377015-UTR-H-paniculata_contig5301:11589..116491622930536.377015-UTR-H-paniculata_contig5301:11589..11649Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5301 11590..11649 +
1691481337.885722-UTR-H-paniculata_contig5301:11589..116491691481337.885722-UTR-H-paniculata_contig5301:11589..11649Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5301 11590..11649 +
1622930536.4333534-UTR-H-paniculata_contig5301:12650..127511622930536.4333534-UTR-H-paniculata_contig5301:12650..12751Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5301 12651..12751 +
1691481337.918948-UTR-H-paniculata_contig5301:12650..127511691481337.918948-UTR-H-paniculata_contig5301:12650..12751Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5301 12651..12751 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930536.3985415-CDS-H-paniculata_contig5301:11649..117471622930536.3985415-CDS-H-paniculata_contig5301:11649..11747Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5301 11650..11747 +
1691481337.8945615-CDS-H-paniculata_contig5301:11649..117471691481337.8945615-CDS-H-paniculata_contig5301:11649..11747Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5301 11650..11747 +
1622930536.416607-CDS-H-paniculata_contig5301:12367..126501622930536.416607-CDS-H-paniculata_contig5301:12367..12650Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5301 12368..12650 +
1691481337.9076974-CDS-H-paniculata_contig5301:12367..126501691481337.9076974-CDS-H-paniculata_contig5301:12367..12650Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5301 12368..12650 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5301.12699.1

>prot_H-paniculata_contig5301.12699.1 ID=prot_H-paniculata_contig5301.12699.1|Name=mRNA_H-paniculata_contig5301.12699.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=127bp
MESYTKVGEGDFTVGTYCEQGLMDHQGCVQLNGRARSVLERLEVPVVDAG
RFVEGQKWATNRSDGRHFRPLVPLELWALLDALTSPPPPPLFRHEQDGVK
GDGGVDSSAVTPEVTSVEIEKRGDER*
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mRNA from alignment at H-paniculata_contig5301:8534..12751+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5301.12699.1 ID=mRNA_H-paniculata_contig5301.12699.1|Name=mRNA_H-paniculata_contig5301.12699.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4218bp|location=Sequence derived from alignment at H-paniculata_contig5301:8534..12751+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAACGCCACGATTCGGGAAGCTTGTGAATCTCAGGTACAGTCGGTCCGTG
TAACAAGTACATCGAGGCTAGACTTTTGGGAAACCTAGTAGAAGGGTGTT
TGTGCCAGCAATGTTTGAAAGGAAATTTCGATTCGGTCCTGTATGGCTCA
TAGTGCGCTGCAGTTCCTGGACCCCACTTTCACCTGCACCAACGCCTACA
AAACGAAAGTCTTTTCACAGCCCTTGATGACTCGTGAAACTCGAGAATAT
TTTTAACTGTGAAGGATTTTGAATAGGAATTCGTTCGTAGCGAGACGTTG
GTGCAGGTGTACTAGGGTCCAGGACGCTCAGTTCACTCCTGTATGAGTCA
TACACAACCAAATCGAAGTTTAAGTTAAAAAATATGTCTGCGCCAACGTT
CTAATGGTCGTCACTCAGAGAGGTCTTCTAGCTGTTGAGGTCTCTAGGTC
ACGGGATAAAAACCGAAATTTCGCATTGCCGGGGTGCGAATGCTTTTGAA
ACGCCGCTGTTTTTCTCGAGAATGGAGAATGTCCTTATCTTTTGCAGGCC
GTGGAAAGAAGCCAGCAGTCAACAGATCGATCTCTGCATGATCTTTCCAA
CTGTACACAATTAGTTCGTTGTAAGTAGCGATGTTTGATAATTCTCGCGA
TTAAATCAATCGCGTTTAAAATGCATTCGCATTCCGATGTGACACCTCTG
GGTTTGGCTTGGCAGTCTCTTAATCCGGTCCCTGCAAAAGAACTCCCGCG
CTCGTAACCGCTTGACCCTTGCCGCAAGTCTTCCGGTCTGATCAGTTAAT
CACGACCTCGACCGCGACGATGTAGCAGGCGTGTAGTAAGTCACCGATGG
TGCTCCCTCATTGACCAATCATGAACACGGTCATTTGAAAGAATTACGGG
ATGGGAAAAAACAAAATGGGTTAAGGATGGAAGAAGAAGTGTGCAAGGAT
AGGCTTGTGCTCCATTATATTTTAGGGCGCTTAAGACTCGATTGTTATCC
CATTCTTTTTCTTTCCTGAGAATCACGACATGTTGAGCAAAAAAGTCACG
AATATGGTACATTTGATAATGACAAAAAACACTCTAATTTGAGAAATGAG
CAATGACAAAACTATGAAGAACAAACATAGCGAAAAAATGGAAGGTGTTT
ATGAATTACACCGACTCTTTAGGTTAATGAGAAATATGAAAGGTGTTTGT
GAAATATCCTACGGGTTGTAAAAATCTTCTCATACATGAAGACGTACAGT
ATATGTGCAAGCGCGGCCGCGATGTCCCCCTTTGAGAATACTCACTGACC
ACTGCAACAGTGATAGACACCAAATGATCGACAAAACGATTCGCCAAGAC
CTCCACAGGAGCTCTCTTTCCTATGCGGGCAACATACTCGGCATATAAGA
ATACGATGCTCCCAGGAGAGATTGGCTCTCGAGGGGACACCGCCTGCTCG
GCCGGTTGATCCTAAGAAATAAGATGGAGTGCGGAGCACGCAGTTGGATT
TTGCTCTGTTGATTTCGATGAACTGGTCATCTGGGGTCGGACGTAGCTAG
AAAAGTTATTCCGAGAAAGGGATAAAATGTCATTGTTCGTTGTGTAGGGA
GCCGAAGTCCAGGGACGTCAGGGACATTCTCTCCACCATAAACCTAGTAA
AATATCAGGCCAATGGGCTCACACTTGTAGGCAGGCCCCGACCACGCCAG
TGGCATACATACATGACAACAGACCCCCCCCTACCCCTTCCCGTGACCAA
TGTTCTGCTATATATATATATATAGCAGCTCCAGCAGTGAAGATCCCGAG
TAAAAGCGTCGCGCTGAAAGGCTCGAGTAAAACTAATATTCCCCCGCCCC
CACTGGGATGTAGGAAAGGGTGATTGGCCGTCGGAAATCGCTTTGATAGG
AACAAAGTTTCGTCGTCCCGAGGACGTGTGGTCAATAGTCTAGCAACGAC
CGCGTGGAAACCACGAGTATGCCCCCCTCCCCCCCACCGGACGAATAGGA
ATACTTGGTATTCAGTATTTGCGACGAATGTGTAGATTTATAAAATAGGT
CGTCTACAAGTTCAGCATCGATATAGGGCACATTTTTCTCATGTTCGTGT
CCCGGATCAACCAACTACCATCTACGACTGCTCCTAACCATAGTAAAATG
AATTAACAGAGGAGGCAGCACTTTATTTTACGTGCCTATACATTCTGAAC
CCTTTGGCGAATCGTTTTTTTTTCCTGGCGCGAATATGCTTCAGGTATTT
GTGTCCGTCAGTGAGGTTGTGTCATTGGGTTTAGTTTAGGTGGGGTTGAG
GTTTTTCTCTTGTATTGGTGAACGGGAATGACGAGTAGGATTTGATGTTC
ACCTTTTTGCCCACGAAATTTACCACAATGAAACCTGTGAGGTGAACGTG
ACCGTTTTCTGGACGTTCGAACGGTGCCTTCACGAGTAGGGAAAGTCAGT
AGTGTTTCTACTGTAGTGTACCGTTAATATATCGGATTTTTTTGGTTTGC
CATTTTTACGATGTTTTATTATTTTTTATTTCCGAACCACCACACATATG
AATCTGTGCATCGTCTTTTGGCAAAAAGCAAAAACAAACAAATTTCTGCT
GAATTCGGGCCACAAACAATAAAAAACAGGTGGTTCTTTAGTTTGATATT
TTGATCCTTTGAAATACAGTTCTTGCTCACGAGCTATTTTAACCACCATT
AACAAAAAGACTATTTCCAAATGGTCGCGGCGGTTGTTAACAAATCTCTA
TTTCACCGGATCCTGTACAATCCCTAGACAATTCCGGCCTAGTAATGTTG
CCCTTCACGAAATTTTGAGCGTGGACACATCTCCTTCGCGAAGGTGAAGG
GGTCGGGGCCGCGAGATGCGCGTTTTAGTTGTGCTCCTCATCTCTATACT
GAAACCCCCTAACCCCTATTCACGGCGGTTTTGCTGCGGGACTGTCAGGT
TCCCTCATTGTTCCCTTCCAGGGTCCGACGCCGTACGGTTCGAAGAAAAA
GCGGAAACGTAACTCTCTCCTTATATGGTATCTTTATTCCTCTGCCTTTT
TACCAGGTGCAGGCAGCCGCAACCGGAAACATCCGCGACTTCCACTACTG
GGAGCACGACCTAGACATGGAAAGTTACACCAAAGTCGGAGAAGGCGACT
TCACAGTGGGCACCTACTGCGAGCAGGGGCTCATGGATCATCAGGGATGT
GTGCAGCTCAATGGGTGCGGCGTTTAAATGGAAGAACCTCGCGTTTTTTC
TTCTTTATATTCTTGTGTGTTCCCTTTCATCGCGAAGATATGTCGTCTCT
TGTAACGGTTGAATTGATTTTTTCCGAGCGTAGCTCTGTGTGTATAGATG
AAGAGAAGAGATACCCATCGATGCTGCAATGCACTTGAACCCCCTCACCG
GACGAACATGACCACCTTGAATGGTTTAGCGTGCGTTTCAAGAGGTATTC
ATCTGGGTTTCAATGTTTTCAGGCATATGGGACTAAGTTTTCACCTCCTC
CTTATTCGAGGCGTGTTTACCGACGTTTATTAAATGCGATGTTTGTAACC
GAAATAACAGCTGTAAGATAACAAAATTTTAATGTTATTGAATTCCCATG
CGGGCAAAACTGCGAGCATCTCTCTCATCGTAACTCTACTATACTCGTTT
GCTTGTCTTGCAATTATTCGGAGCAGTCGCGGCCCCCCTTTCTCTTACCC
CCAGTTTGGTCAGTTTGTCGATAGGTAGTCTAGAGGCTTGAAGATGTTCA
GCATACCTCCGTTTAGTTTTATGGTTATTCCCTACCCCCAACCCCACTCA
CCCCCGACGTTTCCTTCTCTACGTGCACCCTTAGGCGAGCAAGATCAGTA
CTGGAGCGCCTGGAGGTGCCCGTGGTGGATGCCGGGCGTTTCGTGGAAGG
CCAGAAGTGGGCGACGAACCGTAGCGATGGTCGACATTTTCGGCCCTTGG
TTCCTCTCGAGTTATGGGCGTTATTGGATGCGCTTACCTCGCCACCACCC
CCCCCGCTTTTCCGACACGAGCAAGATGGCGTGAAAGGTGATGGTGGCGT
TGACAGCTCAGCAGTTACGCCCGAGGTTACATCCGTTGAGATTGAGAAAC
GCGGTGACGAGAGATGATTTTGTCATGATTTGTTTTTGTGAGCGTGTTGG
GATTCCATGTCTGGAACAATAGGGTGAATTTGGGTGGAAATCTTCATTCT
GCTGGATTACCTATCCAC
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Coding sequence (CDS) from alignment at H-paniculata_contig5301:8534..12751+

>mRNA_H-paniculata_contig5301.12699.1 ID=mRNA_H-paniculata_contig5301.12699.1|Name=mRNA_H-paniculata_contig5301.12699.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=762bp|location=Sequence derived from alignment at H-paniculata_contig5301:8534..12751+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAAAGTTACACCAAAGTCGGAGAAGGCGACTTCACAGTGGGCACCTA
CTGCGAGCAGGGGCTCATGGATCATCAGGGATGTGTGCAGCTCAATGGAT
GGAAAGTTACACCAAAGTCGGAGAAGGCGACTTCACAGTGGGCACCTACT
GCGAGCAGGGGCTCATGGATCATCAGGGATGTGTGCAGCTCAATGGGCGA
GCAAGATCAGTACTGGAGCGCCTGGAGGTGCCCGTGGTGGATGCCGGGCG
TTTCGTGGAAGGCCAGAAGTGGGCGACGAACCGTAGCGATGGTCGACATT
TTCGGCCCTTGGTTCCTCTCGAGTTATGGGCGTTATTGGATGCGCTTACC
TCGCCACCACCCCCCCCGCTTTTCCGACACGAGCAAGATGGCGTGAAAGG
TGATGGTGGCGTTGACAGCTCAGCAGTTACGCCCGAGGTTACATCCGTTG
AGATTGAGAAACGCGGTGACGAGAGATGAGCGAGCAAGATCAGTACTGGA
GCGCCTGGAGGTGCCCGTGGTGGATGCCGGGCGTTTCGTGGAAGGCCAGA
AGTGGGCGACGAACCGTAGCGATGGTCGACATTTTCGGCCCTTGGTTCCT
CTCGAGTTATGGGCGTTATTGGATGCGCTTACCTCGCCACCACCCCCCCC
GCTTTTCCGACACGAGCAAGATGGCGTGAAAGGTGATGGTGGCGTTGACA
GCTCAGCAGTTACGCCCGAGGTTACATCCGTTGAGATTGAGAAACGCGGT
GACGAGAGATGA
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