mRNA_H-paniculata_contig5301.12698.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5301.12698.1
Unique NamemRNA_H-paniculata_contig5301.12698.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig5301.12698.1 vs. uniprot
Match: A0A6H5L611_9PHAE (Uncharacterized protein n=8 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L611_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 4.310e-10
Identity = 28/61 (45.90%), Postives = 45/61 (73.77%), Query Frame = 1 
Query:    7 RLAKYGLNLPIYINTVNVWMRKLGYRVDRVKQSYYTDGHDRVDVVESRKEYVRRKRRIALR 189
            RL  Y +NLP+ ++T + WM +LG R +R  +S+YTD H++ +VVE R EY+ ++R++ALR
Sbjct:  388 RLHAYQVNLPVSMSTTHSWMIRLGCRYERATKSFYTDTHEKKEVVEYRGEYIEKRRKMALR 448
[Close]
BLAST of mRNA_H-paniculata_contig5301.12698.1 vs. uniprot
Match: A0A6H5JMQ7_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMQ7_9PHAE)

HSP 1 Score: 62.4 bits (150), Expect = 8.000e-10
Identity = 28/61 (45.90%), Postives = 46/61 (75.41%), Query Frame = 1 
Query:    7 RLAKYGLNLPIYINTVNVWMRKLGYRVDRVKQSYYTDGHDRVDVVESRKEYVRRKRRIALR 189
            RL  Y +NLP+ ++T++ WM +LG R +R  +S+YTD H++ +VVE R EY+ ++R++ALR
Sbjct:  342 RLHAYQVNLPVSMSTMHSWMIRLGCRYERGTKSFYTDTHEKKEVVEYRGEYIEKRRKMALR 402
[Close]
BLAST of mRNA_H-paniculata_contig5301.12698.1 vs. uniprot
Match: A0A6H5KXL0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXL0_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 1.090e-9
Identity = 27/61 (44.26%), Postives = 45/61 (73.77%), Query Frame = 1 
Query:    7 RLAKYGLNLPIYINTVNVWMRKLGYRVDRVKQSYYTDGHDRVDVVESRKEYVRRKRRIALR 189
            RL  Y +NLP+ ++T + WM +LG + +R  +S+YTD H++ +VVE R EY+ ++R++ALR
Sbjct:   53 RLHAYQVNLPVSMSTTHSWMIRLGCKYERATKSFYTDTHEKKEVVEYRGEYIEKRRKMALR 113
[Close]
BLAST of mRNA_H-paniculata_contig5301.12698.1 vs. uniprot
Match: A0A6H5JRV8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRV8_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 7.130e-9
Identity = 28/61 (45.90%), Postives = 42/61 (68.85%), Query Frame = 1 
Query:    7 RLAKYGLNLPIYINTVNVWMRKLGYRVDRVKQSYYTDGHDRVDVVESRKEYVRRKRRIALR 189
            RL  Y +NLP+ + T + WM  LG + +R  +S+YTDGH++ DVV  R +Y+  KR++ALR
Sbjct:  202 RLLSYQVNLPVSMATTHSWMIALGCKYERATKSFYTDGHEKKDVVVYRGKYIDVKRKLALR 262
[Close]
BLAST of mRNA_H-paniculata_contig5301.12698.1 vs. uniprot
Match: A0A6H5JMT5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMT5_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 7.150e-9
Identity = 28/61 (45.90%), Postives = 42/61 (68.85%), Query Frame = 1 
Query:    7 RLAKYGLNLPIYINTVNVWMRKLGYRVDRVKQSYYTDGHDRVDVVESRKEYVRRKRRIALR 189
            RL  Y +NLP+ + T + WM  LG + +R  +S+YTDGH++ DVV  R +Y+  KR++ALR
Sbjct:  342 RLLSYQVNLPVSMATTHSWMIALGCKYERATKSFYTDGHEKKDVVVYRGKYIDVKRKLALR 402
[Close]
BLAST of mRNA_H-paniculata_contig5301.12698.1 vs. uniprot
Match: A0A6H5J4M4_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J4M4_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 7.210e-9
Identity = 28/61 (45.90%), Postives = 42/61 (68.85%), Query Frame = 1 
Query:    7 RLAKYGLNLPIYINTVNVWMRKLGYRVDRVKQSYYTDGHDRVDVVESRKEYVRRKRRIALR 189
            RL  Y +NLP+ + T + WM  LG + +R  +S+YTDGH++ DVV  R +Y+  KR++ALR
Sbjct:  280 RLLSYQVNLPVSMATTHSWMIALGCKYERATKSFYTDGHEKKDVVVYRGKYIDVKRKLALR 340
[Close]
BLAST of mRNA_H-paniculata_contig5301.12698.1 vs. uniprot
Match: A0A6H5K7P7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7P7_9PHAE)

HSP 1 Score: 58.5 bits (140), Expect = 1.840e-8
Identity = 27/60 (45.00%), Postives = 41/60 (68.33%), Query Frame = 1 
Query:    7 RLAKYGLNLPIYINTVNVWMRKLGYRVDRVKQSYYTDGHDRVDVVESRKEYVRRKRRIAL 186
            RL  Y +NLP+ + T + WM  LG + +R  +S+YTDGH++ DVV  R +Y+  KR++AL
Sbjct:  457 RLLSYQVNLPVSMATTHSWMIALGCKYERATKSFYTDGHEKKDVVVYRGKYIDVKRKLAL 516
[Close]
BLAST of mRNA_H-paniculata_contig5301.12698.1 vs. uniprot
Match: A0A6H5K2T4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2T4_9PHAE)

HSP 1 Score: 56.6 bits (135), Expect = 8.750e-8
Identity = 27/61 (44.26%), Postives = 41/61 (67.21%), Query Frame = 1 
Query:    7 RLAKYGLNLPIYINTVNVWMRKLGYRVDRVKQSYYTDGHDRVDVVESRKEYVRRKRRIALR 189
            RL    +NLP+ + T + WM  LG + +R  +S+YTDGH++ DVV  R +Y+  KR++ALR
Sbjct:  447 RLTAKDVNLPVSMATTHSWMIALGCKYERATKSFYTDGHEKKDVVVYRGKYIDVKRKLALR 507
[Close]
BLAST of mRNA_H-paniculata_contig5301.12698.1 vs. uniprot
Match: A0A6H5JI16_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI16_9PHAE)

HSP 1 Score: 55.8 bits (133), Expect = 1.630e-7
Identity = 26/61 (42.62%), Postives = 42/61 (68.85%), Query Frame = 1 
Query:    7 RLAKYGLNLPIYINTVNVWMRKLGYRVDRVKQSYYTDGHDRVDVVESRKEYVRRKRRIALR 189
            RL  + +NLP+ + T + W+  LG + +R  +S+YTDGH++ DVV  R +Y+  KR++ALR
Sbjct:  300 RLLSHQVNLPVSMVTTHSWIIALGCKYERATKSFYTDGHEKKDVVVYRGKYIDVKRKLALR 360
[Close]
BLAST of mRNA_H-paniculata_contig5301.12698.1 vs. uniprot
Match: A0A6H5JUX8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUX8_9PHAE)

HSP 1 Score: 53.9 bits (128), Expect = 7.820e-7
Identity = 25/55 (45.45%), Postives = 39/55 (70.91%), Query Frame = 1 
Query:   25 LNLPIYINTVNVWMRKLGYRVDRVKQSYYTDGHDRVDVVESRKEYVRRKRRIALR 189
            +NLP+ + T + WM  LG + +R  +S+YTDGH++ DVV  R +Y+  KR++ALR
Sbjct:  377 VNLPVSMATTHSWMIALGCKYERATKSFYTDGHEKKDVVVYRGKYIDVKRKLALR 431
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5301.12698.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
A0A6H5L611_9PHAE4.310e-1045.90Uncharacterized protein n=8 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JMQ7_9PHAE8.000e-1045.90Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KXL0_9PHAE1.090e-944.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRV8_9PHAE7.130e-945.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JMT5_9PHAE7.150e-945.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J4M4_9PHAE7.210e-945.90Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5K7P7_9PHAE1.840e-845.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K2T4_9PHAE8.750e-844.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JI16_9PHAE1.630e-742.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUX8_9PHAE7.820e-745.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5301contigH-paniculata_contig5301:204..392 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size189
Cds size189
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930536.2970078-CDS-H-paniculata_contig5301:203..3921622930536.2970078-CDS-H-paniculata_contig5301:203..392Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5301 204..392 -
1691481337.8669794-CDS-H-paniculata_contig5301:203..3921691481337.8669794-CDS-H-paniculata_contig5301:203..392Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5301 204..392 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5301.12698.1prot_H-paniculata_contig5301.12698.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5301 204..392 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5301.12698.1

>prot_H-paniculata_contig5301.12698.1 ID=prot_H-paniculata_contig5301.12698.1|Name=mRNA_H-paniculata_contig5301.12698.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=63bp
NLRLAKYGLNLPIYINTVNVWMRKLGYRVDRVKQSYYTDGHDRVDVVESR
KEYVRRKRRIALR
back to top

mRNA from alignment at H-paniculata_contig5301:204..392-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5301.12698.1 ID=mRNA_H-paniculata_contig5301.12698.1|Name=mRNA_H-paniculata_contig5301.12698.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=189bp|location=Sequence derived from alignment at H-paniculata_contig5301:204..392- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AACCTACGGCTAGCCAAGTATGGATTAAACCTCCCGATCTACATTAATAC
TGTCAATGTGTGGATGCGCAAGTTGGGGTACAGGGTCGATCGGGTCAAGC
AATCGTATTACACCGACGGCCACGACAGGGTTGATGTCGTCGAGAGTCGC
AAGGAGTACGTCCGCCGAAAGCGGAGAATTGCTCTGCGA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig5301:204..392-

>mRNA_H-paniculata_contig5301.12698.1 ID=mRNA_H-paniculata_contig5301.12698.1|Name=mRNA_H-paniculata_contig5301.12698.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=378bp|location=Sequence derived from alignment at H-paniculata_contig5301:204..392- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AACCTACGGCTAGCCAAGTATGGATTAAACCTCCCGATCTACATTAATAC
TGTCAATGTGTGGATGCGCAAGTTGGGGTACAGGGTCGATCGGGTCAAGC
AATCGTATTACACCGACGGCCACGACAGGGTTGATGTCGTCGAGAGTCGC
AAGGAGTACGTCCGCCGAAAGCGGAGAATTGCTCTGCGAAACCTACGGCT
AGCCAAGTATGGATTAAACCTCCCGATCTACATTAATACTGTCAATGTGT
GGATGCGCAAGTTGGGGTACAGGGTCGATCGGGTCAAGCAATCGTATTAC
ACCGACGGCCACGACAGGGTTGATGTCGTCGAGAGTCGCAAGGAGTACGT
CCGCCGAAAGCGGAGAATTGCTCTGCGA
back to top