prot_H-paniculata_contig5298.12686.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig5298.12686.1
Unique Nameprot_H-paniculata_contig5298.12686.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length379
Homology
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BLAST of mRNA_H-paniculata_contig5298.12686.1 vs. uniprot
Match: A0A6H5LGC4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LGC4_9PHAE)

HSP 1 Score: 129 bits (324), Expect = 6.460e-29
Identity = 103/288 (35.76%), Postives = 126/288 (43.75%), Query Frame = 0 
Query:  124 MRDEDSASPAPNAVCYNVALQGLLREGRWWEARQLLS-------GASGSSRLDYLSYNSVIRACAEAGAME---------------EAFKTKAEMSAAGITADPFTYEALAAGCAMVGDWRSAEALVRDMLNERNRYRARAATMSHTTMPAPPALKQGSPSKATNTTLPNTKSTTRDLSHLSCSRTEGNKGDPKNNKGNNNNSQNIPEAVPENDHEWIIT------RKRWRRADGVRIFPSVFHGLMEAYARAGEWQRAVDCLDDMAHPGDHW----EGKEEPVGAGT 379
            MR + S  PAPN VC+N AL  L+R+GRW EAR LLS        A GS  LD+LSYN+VIRACA AG  E               EA KT+ EM AA I AD +TYEAL+  C + GDW +AEA+VR+M+   +                                                                              +  W  T      R++ R  +GV   P V HGLMEAY+RAGEW+RA  CLDDM   G  W    +G+E  VGAGT
Sbjct:    1 MRSDPSRYPAPNTVCHNAALMALMRDGRWREARGLLSEVASAPPAAGGSVELDFLSYNTVIRACAAAGEAEDVRDNDEAFFGGKALEALKTREEMRAADIPADAYTYEALSTACGLAGDWEAAEAVVREMVAGCSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDPWSQTLRHRQRRRQERLENGVPPSPRVIHGLMEAYSRAGEWERAQQCLDDMRQAGSGWLPGDDGRER-VGAGT 287
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BLAST of mRNA_H-paniculata_contig5298.12686.1 vs. uniprot
Match: D7FX74_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX74_ECTSI)

HSP 1 Score: 95.5 bits (236), Expect = 1.430e-17
Identity = 57/120 (47.50%), Postives = 69/120 (57.50%), Query Frame = 0 
Query:  120 TLEGMRDEDSASPAPNAVCYNVALQGLLREGRWWEARQLLS-------GASGSSRLDYLSYNSVIRACAEAGAMEEAFKTKAEMSAAGITADPFTYEALAAGCAMVGDWRSAEALVRDML 232
            TL+ MR + S  PAPN VC+N AL  L+R+GRW EAR LLS          G   LD+LSYN+VIRACA AG  EEA KT+ EM AAGI                     +AEA+VR+M+
Sbjct:   97 TLKRMRSDPSRYPAPNTVCHNAALMALMRDGRWREARGLLSEVASATPATGGGVELDFLSYNTVIRACAAAGEAEEALKTREEMRAAGIXXXXXXXXXXXXXXXXXXXXXAAEAVVREMV 216
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5298.12686.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5LGC4_9PHAE6.460e-2935.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FX74_ECTSI1.430e-1747.50Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 62..110
e-value: 5.2E-9
score: 36.2
coord: 171..216
e-value: 1.2E-8
score: 35.0
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 337..361
e-value: 0.0019
score: 16.3
coord: 2..27
e-value: 5.7E-4
score: 17.9
coord: 172..204
e-value: 5.1E-5
score: 21.2
coord: 99..128
e-value: 1.8E-5
score: 22.6
coord: 29..60
e-value: 2.6E-4
score: 19.0
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 137..159
e-value: 0.25
score: 11.7
coord: 29..58
e-value: 6.9E-4
score: 19.7
coord: 338..361
e-value: 0.049
score: 13.9
coord: 2..24
e-value: 0.37
score: 11.2
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 204..234
score: 8.495
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 135..165
score: 7.235
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 97..131
score: 10.567
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 169..203
score: 10.238
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 1..26
score: 8.55
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 27..61
score: 9.898
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 334..368
score: 6.971
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 62..96
score: 9.854
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 1..130
e-value: 2.5E-35
score: 124.5
coord: 131..292
e-value: 5.3E-23
score: 84.0
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 4..59
coord: 61..233

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5298contigH-paniculata_contig5298:1523..10157 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5298.12686.1mRNA_H-paniculata_contig5298.12686.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig5298 1523..10157 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig5298.12686.1 ID=prot_H-paniculata_contig5298.12686.1|Name=mRNA_H-paniculata_contig5298.12686.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=379bp
AACGKGKRWQAAVELLETMREEGLAPDGFSYSAAISACKRCGEWEQALKL
VEGMRFEGLGRDRHSLNAAIAACATAGQWQPALEILLRMETKGPEPDVFT
YSSVIDACARGGKLDLALETLEGMRDEDSASPAPNAVCYNVALQGLLREG
RWWEARQLLSGASGSSRLDYLSYNSVIRACAEAGAMEEAFKTKAEMSAAG
ITADPFTYEALAAGCAMVGDWRSAEALVRDMLNERNRYRARAATMSHTTM
PAPPALKQGSPSKATNTTLPNTKSTTRDLSHLSCSRTEGNKGDPKNNKGN
NNNSQNIPEAVPENDHEWIITRKRWRRADGVRIFPSVFHGLMEAYARAGE
WQRAVDCLDDMAHPGDHWEGKEEPVGAGT
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf