mRNA_H-paniculata_contig5298.12686.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5298.12686.1
Unique NamemRNA_H-paniculata_contig5298.12686.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig5298.12686.1 vs. uniprot
Match: A0A6H5LGC4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LGC4_9PHAE)

HSP 1 Score: 129 bits (324), Expect = 6.460e-29
Identity = 103/288 (35.76%), Postives = 126/288 (43.75%), Query Frame = 1 
Query:  370 MRDEDSASPAPNAVCYNVALQGLLREGRWWEARQLLS-------GASGSSRLDYLSYNSVIRACAEAGAME---------------EAFKTKAEMSAAGITADPFTYEALAAGCAMVGDWRSAEALVRDMLNERNRYRARAATMSHTTMPAPPALKQGSPSKATNTTLPNTKSTTRDLSHLSCSRTEGNKGDPKNNKGNNNNSQNIPEAVPENDHEWIIT------RKRWRRADGVRIFPSVFHGLMEAYARAGEWQRAVDCLDDMAHPGDHW----EGKEEPVGAGT 1137
            MR + S  PAPN VC+N AL  L+R+GRW EAR LLS        A GS  LD+LSYN+VIRACA AG  E               EA KT+ EM AA I AD +TYEAL+  C + GDW +AEA+VR+M+   +                                                                              +  W  T      R++ R  +GV   P V HGLMEAY+RAGEW+RA  CLDDM   G  W    +G+E  VGAGT
Sbjct:    1 MRSDPSRYPAPNTVCHNAALMALMRDGRWREARGLLSEVASAPPAAGGSVELDFLSYNTVIRACAAAGEAEDVRDNDEAFFGGKALEALKTREEMRAADIPADAYTYEALSTACGLAGDWEAAEAVVREMVAGCSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDPWSQTLRHRQRRRQERLENGVPPSPRVIHGLMEAYSRAGEWERAQQCLDDMRQAGSGWLPGDDGRER-VGAGT 287
[Close]
BLAST of mRNA_H-paniculata_contig5298.12686.1 vs. uniprot
Match: D7FX74_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX74_ECTSI)

HSP 1 Score: 95.5 bits (236), Expect = 1.430e-17
Identity = 57/120 (47.50%), Postives = 69/120 (57.50%), Query Frame = 1 
Query:  358 TLEGMRDEDSASPAPNAVCYNVALQGLLREGRWWEARQLLS-------GASGSSRLDYLSYNSVIRACAEAGAMEEAFKTKAEMSAAGITADPFTYEALAAGCAMVGDWRSAEALVRDML 696
            TL+ MR + S  PAPN VC+N AL  L+R+GRW EAR LLS          G   LD+LSYN+VIRACA AG  EEA KT+ EM AAGI                     +AEA+VR+M+
Sbjct:   97 TLKRMRSDPSRYPAPNTVCHNAALMALMRDGRWREARGLLSEVASATPATGGGVELDFLSYNTVIRACAAAGEAEEALKTREEMRAAGIXXXXXXXXXXXXXXXXXXXXXAAEAVVREMV 216
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5298.12686.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5LGC4_9PHAE6.460e-2935.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FX74_ECTSI1.430e-1747.50Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5298contigH-paniculata_contig5298:1523..10157 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score95.9
Seed ortholog evalue4.3e-17
Seed eggNOG ortholog2880.D7FX74
Hectar predicted targeting categoryother localisation
EggNOG free text desc.endonuclease activity
EggNOG OGsKOG4197@1,KOG4197@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons7
Model size1137
Cds size1137
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930534.0388434-CDS-H-paniculata_contig5298:1522..16061622930534.0388434-CDS-H-paniculata_contig5298:1522..1606Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5298 1523..1606 +
1691481336.7444916-CDS-H-paniculata_contig5298:1522..16061691481336.7444916-CDS-H-paniculata_contig5298:1522..1606Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5298 1523..1606 +
1622930534.0576162-CDS-H-paniculata_contig5298:1954..21031622930534.0576162-CDS-H-paniculata_contig5298:1954..2103Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5298 1955..2103 +
1691481336.7553318-CDS-H-paniculata_contig5298:1954..21031691481336.7553318-CDS-H-paniculata_contig5298:1954..2103Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5298 1955..2103 +
1622930534.0827858-CDS-H-paniculata_contig5298:2723..28101622930534.0827858-CDS-H-paniculata_contig5298:2723..2810Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5298 2724..2810 +
1691481336.764851-CDS-H-paniculata_contig5298:2723..28101691481336.764851-CDS-H-paniculata_contig5298:2723..2810Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5298 2724..2810 +
1622930534.1018016-CDS-H-paniculata_contig5298:3868..41121622930534.1018016-CDS-H-paniculata_contig5298:3868..4112Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5298 3869..4112 +
1691481336.784482-CDS-H-paniculata_contig5298:3868..41121691481336.784482-CDS-H-paniculata_contig5298:3868..4112Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5298 3869..4112 +
1622930534.1190538-CDS-H-paniculata_contig5298:8425..85931622930534.1190538-CDS-H-paniculata_contig5298:8425..8593Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5298 8426..8593 +
1691481336.7984571-CDS-H-paniculata_contig5298:8425..85931691481336.7984571-CDS-H-paniculata_contig5298:8425..8593Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5298 8426..8593 +
1622930534.1373186-CDS-H-paniculata_contig5298:8891..90191622930534.1373186-CDS-H-paniculata_contig5298:8891..9019Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5298 8892..9019 +
1691481336.806696-CDS-H-paniculata_contig5298:8891..90191691481336.806696-CDS-H-paniculata_contig5298:8891..9019Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5298 8892..9019 +
1622930534.1593144-CDS-H-paniculata_contig5298:9880..101571622930534.1593144-CDS-H-paniculata_contig5298:9880..10157Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5298 9881..10157 +
1691481336.8143675-CDS-H-paniculata_contig5298:9880..101571691481336.8143675-CDS-H-paniculata_contig5298:9880..10157Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5298 9881..10157 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5298.12686.1prot_H-paniculata_contig5298.12686.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5298 1523..10157 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5298.12686.1

>prot_H-paniculata_contig5298.12686.1 ID=prot_H-paniculata_contig5298.12686.1|Name=mRNA_H-paniculata_contig5298.12686.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=379bp
AACGKGKRWQAAVELLETMREEGLAPDGFSYSAAISACKRCGEWEQALKL
VEGMRFEGLGRDRHSLNAAIAACATAGQWQPALEILLRMETKGPEPDVFT
YSSVIDACARGGKLDLALETLEGMRDEDSASPAPNAVCYNVALQGLLREG
RWWEARQLLSGASGSSRLDYLSYNSVIRACAEAGAMEEAFKTKAEMSAAG
ITADPFTYEALAAGCAMVGDWRSAEALVRDMLNERNRYRARAATMSHTTM
PAPPALKQGSPSKATNTTLPNTKSTTRDLSHLSCSRTEGNKGDPKNNKGN
NNNSQNIPEAVPENDHEWIITRKRWRRADGVRIFPSVFHGLMEAYARAGE
WQRAVDCLDDMAHPGDHWEGKEEPVGAGT
back to top

mRNA from alignment at H-paniculata_contig5298:1523..10157+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5298.12686.1 ID=mRNA_H-paniculata_contig5298.12686.1|Name=mRNA_H-paniculata_contig5298.12686.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=8635bp|location=Sequence derived from alignment at H-paniculata_contig5298:1523..10157+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCAGCGTGCGGCAAGGGAAAGCGATGGCAGGCAGCGGTCGAATTGTTGGA
GACGATGCGAGAAGAAGGACTCGCTCCTGATGGAGTGAGTAGTGTGTGTC
ATGATCCAGACGTACTGCAATACTATTATCTCATTACAACAGAGCCACAG
GGTCACAATGCTGGAGATTGGTGACACGGTTTTAATGAATGAGTGTCGTA
TAAGTCAGTGTGCAGTTTACATATGTAGAATTCACCCTCCGATCAAAGAA
CAGCCCTTCTTATATGCGTTTCTAATATCGGGGCATTTTTATGTGTTGAT
ATTTCTTGCACTGTTGACTATAATAGTAGTTGGCTATCTTTTATTGTTTT
GCTACCTTGTCATGTGCTACATGTTTTTTTAACGTTTTTTTTTTCGTCTC
TAACTTGATCTTTTTGCTATTTTTCGGAATAGTTTTCTTACTCGGCGGCC
ATCTCAGCGTGCAAGCGATGCGGCGAGTGGGAGCAAGCGCTGAAGCTCGT
AGAGGGGATGCGGTTTGAGGGCTTGGGCAGGGATAGGCATTCGCTAAACG
CCGCAATTGCTGCTTGCGCCACTGCCGGCCAGTGAGTAAATGATGAGACT
TGTAGGATATAGGAGAAAATGTCAAGACAACCAACGATGTAACGGAATGA
TGACAACATCGCAACCAGAAGACGTCTGGATCAAGACAAAATCGCATCAC
GGAAGTGTCTGAATGGTGGCAACCTGTGCACGAACTGATTCAAGTCATTT
TCTGGATGGATGGTGAATGGATGGATGGCTAGATTACAATTATACCCGAC
ACAGTCTGAATGATGACAAAAGCGCATCAACGAAATGTCCACGAAATGTG
TGAACGAAGACAATATCGCAGCAAGCGATATATAGTACCTGCCGTCTCAT
AAGAGACCCATGTAAAATACTGCTGGCCCGAGAATGTTTTTTATCCAAAT
TATGTTGACACGCAAGAGTGAGCTCAAATTGTAGCCCTAAATGGTAACAG
CGATCAATTGAAAGTGCTTCCCCAATTCGCCGAATCAAGGAATGGGGCCT
GAATCAAGTTTTCATTTTTTTTATTTTCAGCGCGACGGTACAGTATCTGG
ATAGTATCAAAATCGCATGACCGAAAAGTCCGCGTGGATCGTGTACAAAT
TGATAAAAACGACCTGGCTGGATGGATAATGATACTATCGTGTGTTCCCA
GGTGGCAACCAGCTTTGGAGATATTGCTGAGGATGGAGACCAAGGGGCCG
GAACCTGATGTCTTCACCTACAGTTCGGTGATTGATGCGTAAGTGCTACT
GGGTGAAGTCGTCATTAAGTAGTACCGCTGCGGCCACGACTGCGCGCCCA
TGCAGTACGCACGTGTGTTTTCCGCACATTTCACTTAGTCATTATCCAAA
GCCCATGACATATGCACTACGGCTTTTTACGCTCACGTGTAGACGACACA
TGCATGATATCTACAAAGATTTGGTTATACGTAAATTACTTGAATAAAGT
ATAAAAAAATGTTCAAACAGAAAACGAACTTGAGTGTATATATCAGTTTA
TATTACAGGCAGGTCTTTTTTTTTATCGTCAGCTATGCTCGCCTCCTTCT
CGTTAAGCGTGTGCTGTGCGTTGAGTCGGTGGTGCTGTCGAAAATAGATG
AAATGCATCTCGCAAATTTCGTCCAAGAATATTACATAAAATACCTGGAA
ATGTTTTGAAAGCATTCAAATCGTGCCCTCCTTTTTGCGTTCTTAATTAT
TTACCCTTTTTTTTTGTGACAAATCACTGTAATCGCTTAGACCCACGGTC
AGGCTATGTGAAGTAGTTCTTACAGACAAAATCGTACATAGATGAAAATG
ACTCACCACCAAAAATTCGATCAGATGGGATCGGAGGAGGAATAGGTGAT
GACCACCTCCAATCGTACTTTTTCTCTCCTCGTATGTTGTTTATTGGCGC
TGATGACTATGTGGTGCACATGCAACTTTGAAACGCAGGTTAAATAACCT
CTGCGACACACATAAATATATATAGATGGTGCTATTTACAGAAAGTTAAT
TAGTACTGGATTATAGGCAGTTCGGTTTTCTAGTGTACCTCGTGTAGCCC
GTTTCAGCTACAGCTTGTTTCATTTTGACAAACAAGAGTATGACTCATAT
CACCATTATAATATTTGACACACGGCGAGCGATACTGGCAATCACATTGG
TACATTGGTATGCTTACCTCCCGTCAAATGCAGTCTCCCGCTTCTTCCGT
TCCTAATGTTTCCTGCGCCTTTCCCCCGGCCCTCCAGTACGTGTCCTCAG
ACCCTACCGATGACCCATGCCATCTTCAACGCCCTACCTAACCCAGGTGT
GCCCGGGGTGGAAAGCTAGACTTAGCGCTGGAAACCCTTGAGGGCATGCG
CGACGAGGACAGTGCCTCACCCGCGCCAAACGCAGTTTGCTACAACGTGG
CGCTTCAGGGCTTGTTGCGAGAAGGGAGGTGGTGGGAGGCGCGACAGCTG
CTTTCGGGGGCATCAGGATCGTCACGGCTGGATTATCTGTCGTACAACTC
GGTCATCAGGGCTTGTGCAGAGGCTGGAGCGATGGAAGAGGTTTCGTATT
GTACATTGAGTTCTTTAGTGCCGAGTAGTCAGTCAGCCAGCTTGGGTTTT
CTCTCATGCGATGTACTTTTTTTTTAACCCCCAGAAGGCTAAGGCAAAAG
CCTCTATCCGATGCTTCCATACCGAAGTACATCTACATTTCCTTTTACAG
AACAGATTTATTATTTCCTCTGCGGGGTAAGCGCCCACTAAAAGACCGCT
GACTAGACTTCCAGTCATGCTCAGTTCACGAGCTACCCTACCCGTTCGGG
CGTAGGTCCGTGGTTGTCGTCGAGCTACGGCTAGGTTGGGCCTGTTTAGG
TATGCCACCGCGGGGACTTTAATCCTGCACTGACTGTCGAAGAAACCGTG
TTGCAAATTCATTGCGTAGTACATGCAGTGGCCTTCTCTCTGACTTATGA
CACTGGGCTTGTGCTACAACGCCCTCCCAAAATCCACCCTTAGTTGTCAA
TGCGAAAACGGTTGAGTAGTCACGGCTGCTTTGATTTTAAAGCAGTTCCA
GTGGCATACCTCAATTTACACGAGAAAACGCCTATACTCCAGATACCGCC
ACCGGTGATGGTGTGTATGTGCCAAAACATTGTCACCAGGGAATACGCTA
GATGTCTTACCCCTTGTGTTTGAAGTATGGCTTGCACCCGCTATTGATTT
ATTTTTCCTGTCAAGTGTGTACAAGTTCAGATTGAAGTCAGCTGCATAAC
CTTGACATGGGCACGATGGATTTATAGTATGAGGTTCAGAGTTGTACTTC
AACTGACTTCCCCCCCCCCCCCCGCCCTGAATTGGAAAATGGCGTAATAG
TACACAACAGCCAAAAAATGTGTCGTGAGAGTGTGTGACGCTACCACATA
CCGCAGCACCTGCAGTACGTTGACGGTGAAAATCAGGCATAGTGTACTGC
CACAAGCGCCCAACGTCCCGTGCATGCCATCACCTCTCATCATCCCTCCC
GTTATGCGGTACGTTGAAAAAGTATCGCATGTATGTCATCACCCCCATAT
TATCAATCCCTAGAGTAGGGAGGACGAGATCATAGCACCCAAATAGAATG
AAACGGTATATTTCAAGGCAATACGCTATAGGCACCCCTAGAACGCAATT
TTTTTGGCATCAAAACCTCATCACTGGAAGGGGTGTTTTATTGTCAAGAC
TACGGTACTTCTGTATCCCCCCCCAGCAAAAACTAACCATGTAACACGCC
AGTAAAACTCACACATCCGCGTAAGGATGTGAATCCAGACACTCGAAAAT
AATTCCGACTTGAACAGAAAACGAAGCAAGCCGCCGACGGTACTAGGATT
GCTGAACAGATTACGGAAAATCATTGTACCACGAGCCCAGCGACGAAGAC
GGCTGCATCGGCGATGACACGTAATACGCACAAGTGCTGGTCGCTGACGG
CGATAGGGATGATGAGGGATCCGAATGGGTCGAAGGCGGTGAAGAGCTGC
ACCTTGTCCACGAGACAGTCGTCTCCCTGGGCGCATGGAGGGTTTCGGGA
GCGGCGGGAAAAGTGGATATAAATATTTTGTTATTCTCGGGGCCGGTAGA
GACGGCATGATCCGAGGCCATTTTCCGCTGACTGCAGTGGCAGTAAGTAC
ACTTTAGTCGGCAGGATTACTCTCGGAGTGTGCCGTAACTTCCGACCATG
AGTTCATTCAAATCGTCAGACGCACATTTTCCGCAGTCCCCGGTAAATCC
AAGCGATTGCGGAGATGGCCCCCGCGCGACTCCTCACAGCCCGGTCAGGT
TCCCTGTTCTCATCGCCGGCAGTAAACAACACGTGTGCGTATTGCGTGTC
CTCGTCGGTGTAGGTGTCTTCGTCGCTGGGGTCCGGCAGGATCAAAATTG
CGTTCTTCTGGAGCTCCCGCTCGGATATCCTTGGCGCCGATTGCTGCAAG
ATCATCGTTCCATGATCTACTCCGCGAGTTTCCTTCCCCGCCCCGTCGTC
AGCAGCCTCCTGGGAACATAATCACGACGAGCTTCTCCTGCTCTGCTGGT
GAGGATGATGTTCGTCCCGACGACACCCCCAACGCTACTGCACCGTTCTT
TGCGTCAAGCTGGACCCTCGTACCCTACGCCACCGCCACGCCGCAATCGT
TTACGAGACGGGGTTGCCTACTGCTCACCGCCCCGACTGACGAAGTCTGG
GCGTGGCCGAGTGCAACTGCTGAAGCTCCTCCTCCTCCTCCTCCTCTTGC
AGCAGATGTTCCTCTGTCGCCTTCCGCGCCGCTTGTGCACTCCGCCGCTT
TTGTATCCCCTTTGCCTGATTTACAATGCGTCCCTGAGAAGGCGGCGCTG
TCCGACGTTATCCCTTCACTCATCAGGTCTTTACTGGCTTTTGGCGCGGG
CGCCTCCTTGCCATCCCAGCAGTCTCGGGAACTCCTACTCTTGTTCTCAG
ATGTTTTTTTCTGTCTCTCACCTCCACTCTCCATGACCTTCAAGAGTTCT
CTGGGTCTTGTTGGTGTTTTCGCCCATTTTCATCAGGGTCTGTAACCCTC
GCTTGTGCTCTGCACGGTACAGCCCTCTCAACATAGCCTTAAAAACCACG
CTAGCCGCGCCTAAGTTCCATCTCCCTTCAGGCATGACCTCCTCGTGTAG
ATAATAATTATCCAGATATTTTAAAGGTTTCTCTGCACCCCCCACGAAGC
TGTCCTCCAAAGGCACTCCATCGTCCACCTCGGGCAACCCGGATGTATCC
AACGCAAACTCCATTTTTGTCAAACTTCTCTCTGATTTTCGGAAATTTTG
GCAGGCCGGCGAGCAGCGCTTTCTCGCTCAACCCCCCCCTCTCTCTCTCA
GTACTTTTCCTCCATGCGCTGGATACAGGGTGCAACCAACTCTCTCAAAT
TAGCTACCTCAGGCTCGCCAACGTCCTTGCTGGAAATTTCAATGTCGATT
ACTGGTGTGTGCCATAGAGTTTCCCAATGGATCAGGCCTCGTTCACCTTG
ACCCCTCAATTGCTAAGCCGGGCGTGGGCATGAGCCCCCCTCTAGTGATC
CGTACTTGACGCGTTTCAGGTTTCACCACCGCGGCACCGGCATCTTCGTC
CCGCGATTGGCTTCACCTCTAATGGTAACATCTGTCTCAACCATTTTTAT
CGCTCAGCCGCCGAGCCTCTGTGGGCCTAAAGCTCAACCTAGAACAATCT
GCTCGAGACTGTTGACCACATCTGGTCCAATCTAATTTGATCGAATTATA
CCGCTGTGGACTTTCCCTTTACGGGAGTCGGGCCTGGGAGACTTCCCCCT
TGCACTATCATGGTTGTACGACGCGGGGATTCTGAAGGTAATTGACGGAA
TCCGGCGGTGACGGGTTTACCTCTGACAAACTTTTGAACCCCTAGTCAGC
TGTGGAGTGCCTGTTTATTATTTGGCTGTTACGAAGAAAAGTAGGTGTTT
GCCCGTTCTCGCTCTACACTAACTCCTTCTTCACCTGATACACTGTAACC
AGTGATAGGGAGCTGGTTAGGCATTCTTTCGGTGTGTTCGTCATTGCTCA
CGACTGATAAGACTGTGTCTTCCAAAATAAGGTTCAACGTTAAGTGAGGT
TCAACCCCAAACAGCGCTTTCCCTAACCCAAAGTCGTGACCCGTGGCCTT
TATTTGGAGGACCCAATGCCCCTCGATCGCATTGTGACTACTTATGGGGT
TTTCAATACTTCCGTGCCTCCACAGCGTTGTGCGAAAGTATACTTTCTGC
CACGATTTCGAGGCGAAAAAAGCGACTGTGTGAGCCCAAAAATAGTGCTT
TCGTACAACGCTGCAGAGGCACGGAAGTAGTGCAAGTCCTAAAACAGCCA
CAATGCGATCGAGGGGCATTGGGTCCTCCAAGTAAAGATCACTGGTCATG
CTGTAGGTTAGGGAGCACTCTTTGGGGGTTGGGCCTCATATAAAAATTCA
ACCTCAATGTGGAAGACGCTCTGTTTGATCCTTGGCAAATCCATCGCTCG
GTCGTGACGAAGTCCGGTTCCCGAAGGGTTAAACAATTGGTCTGTTTTTC
TTCCTCATATGGCGCTTTGTTTTATCGTTTTTATTTATGATTTTCTGCTT
GTTTATGAATTGGCTTGACCTACCAAGTGCACATAGTTTTTTTTGTGTGT
ACTCATATCCATGTCTATGGGTCATCATCATTATCCAATAGTGTAGATTT
GGTGTCAATAGGAACCATCTACCGACGCGCTCAACGATATAACGGTTTGG
GATAAAACTATGCTATGTTATCTTGGGCAGGGATTTACCGAGTGTGATGT
GCTCAACCTATCACGGATTTTGCATGTGCTGTTCGTGTTGTTTGGTATAA
TAGGCGTTTAAGACGAAAGCAGAGATGAGCGCTGCGGGTATCACGGCCGA
CCCATTCACCTATGAAGCGCTAGCGGCAGGGTGCGCAATGGTGGGGGACT
GGCGGTCGGCGGAGGCTCTGGTCAGAGATATGCTTAATGAGAGAAACAGG
TATCGTGCTAGAGCTGCTACTGTGCACGGCACATCCTGAGAGACTCTATT
CCACGTACGCCTTGCGGCTTACATACAGCCTCACCCAAAATAATAGTTTG
TCTTATTAATAAAGATTACACAGCAATCAGTATTTTGGACTTGATTCAGT
GATCTGGAAGCGTGACTCGCAACATAATGATAACGTACGTGAACATTATC
TCAAGAGACCCAGGCAGAGAAATAGGCTCTTCAAGCATCCCCCCGCCTTG
CTAGTCTGTAGTTAGCTATTACCCAACGTAGCCTACAATACCGAGCAAGG
CAATTGATACTCATCAGAGATGAGCCATACGACGATGCCAGCTCCCCCAG
CCTTGAAGCAGGGATCGCCGTCGAAGGCAACTAACACCACCTTGCCCAAC
ACTAAGTCCACCACGAGAGACCTCTCTCATCTTTCCTGTTCACGCACGTC
ATCATTCTGTTGCGAGCCACGCTCCCAGATTACTAAGATATCCTTGCGCT
TACCCCGCTGTTTTGGTCAAGTAGGGGCACGAACAAAGACGTCAGGCCAC
AGCTGAAGCTCTCACCCATTGCTCAATTGTTTAGTCGTTCGGACTTATAT
ACATGACCGAGGGTCTCCCATATTAATCTCCTCTACGTCGCATGGGGGTG
TTGTTACATCCTTTCAGTATTTCCTGCTGTTGTGCATCGAATCGTGCTCT
CAAGGTCCCCACCTCGTACCCTAAAGCCGCTGATCTGGCCTCGAGCGACC
ACCTACTTTCCAGGCTTGCTTCTCGGTGGGTAGGGCATCAAGGCTAGGCA
CTCCTTGCTAGTGGGAAATTCGTTTGCTTTCATGTACCCGCCTTTGACCT
GTACATTGGACCTCCTGGGGCCACTTGGACCTTGCAATGTTCCTGCTGCC
GCATAGCGTCGCGCTACTCCGTCTACCTTCCAATATGTCATTTTCCATTA
TTTCGATGATTTTTAGATCTGATAGTGTCTTCCTGACTGCTGCCCCCCCC
CCCTAAAGAGGTGCATGGTGAAACCTTTGCTCGGCAACTCTGCTTCTCCC
AGATGTTTCGTTAGTCGGGCTGTCATGCCGGCGGCCGGTAAGAGGGTTTA
TCTGCCCTGCGCTCGCCTAGCGCACAGCTTGGGGTCTATCCACGTAAAGA
GGCAAACTTGTTGGAAAAAAACACAATTACCAAAATACGAAACATACATG
ACTCAAAACAAATAACACCCGCGCCCCCGCTCCCTCACTCCCCCAAAACA
GGGTGTTGGTTGCCAATCGCGGAACACGACCGTACACGCGAGGCAGCGAT
AATGACAGCGAGGGCAACAAGGGTGACCCGAAGAATAACAAAGGGAACAA
CAACAATTCGCAGAACATTCCGGAGGCCGTTCCAGAGAACGACCATGAAT
GGATCATAACACGAAAGCGGTGGCGCAGGGCAGACGGTGTGCGCATCTTC
CCCTCGGTTTTCCACGGCCTCATGGAGGCGTACGCAAGGGCTGGGGAGTG
GCAGCGCGCCGTAGACTGCCTAGATGATATGGCGCACCCAGGGGATCACT
GGGAGGGCAAGGAAGAACCTGTAGGCGCGGGCACC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig5298:1523..10157+

>mRNA_H-paniculata_contig5298.12686.1 ID=mRNA_H-paniculata_contig5298.12686.1|Name=mRNA_H-paniculata_contig5298.12686.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2274bp|location=Sequence derived from alignment at H-paniculata_contig5298:1523..10157+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCAGCGTGCGGCAAGGGAAAGCGATGGCAGGCAGCGGTCGAATTGTTGGA
GACGATGCGAGAAGAAGGACTCGCTCCTGATGGAGCAGCGTGCGGCAAGG
GAAAGCGATGGCAGGCAGCGGTCGAATTGTTGGAGACGATGCGAGAAGAA
GGACTCGCTCCTGATGGATTTTCTTACTCGGCGGCCATCTCAGCGTGCAA
GCGATGCGGCGAGTGGGAGCAAGCGCTGAAGCTCGTAGAGGGGATGCGGT
TTGAGGGCTTGGGCAGGGATAGGCATTCGCTAAACGCCGCAATTGCTGCT
TGCGCCACTGCCGGCCATTTTCTTACTCGGCGGCCATCTCAGCGTGCAAG
CGATGCGGCGAGTGGGAGCAAGCGCTGAAGCTCGTAGAGGGGATGCGGTT
TGAGGGCTTGGGCAGGGATAGGCATTCGCTAAACGCCGCAATTGCTGCTT
GCGCCACTGCCGGCCAGTGGCAACCAGCTTTGGAGATATTGCTGAGGATG
GAGACCAAGGGGCCGGAACCTGATGTCTTCACCTACAGTTCGGTGATTGA
TGCGTGGCAACCAGCTTTGGAGATATTGCTGAGGATGGAGACCAAGGGGC
CGGAACCTGATGTCTTCACCTACAGTTCGGTGATTGATGCGTGTGCCCGG
GGTGGAAAGCTAGACTTAGCGCTGGAAACCCTTGAGGGCATGCGCGACGA
GGACAGTGCCTCACCCGCGCCAAACGCAGTTTGCTACAACGTGGCGCTTC
AGGGCTTGTTGCGAGAAGGGAGGTGGTGGGAGGCGCGACAGCTGCTTTCG
GGGGCATCAGGATCGTCACGGCTGGATTATCTGTCGTACAACTCGGTCAT
CAGGGCTTGTGCAGAGGCTGGAGCGATGGAAGAGGTGTGCCCGGGGTGGA
AAGCTAGACTTAGCGCTGGAAACCCTTGAGGGCATGCGCGACGAGGACAG
TGCCTCACCCGCGCCAAACGCAGTTTGCTACAACGTGGCGCTTCAGGGCT
TGTTGCGAGAAGGGAGGTGGTGGGAGGCGCGACAGCTGCTTTCGGGGGCA
TCAGGATCGTCACGGCTGGATTATCTGTCGTACAACTCGGTCATCAGGGC
TTGTGCAGAGGCTGGAGCGATGGAAGAGGCGTTTAAGACGAAAGCAGAGA
TGAGCGCTGCGGGTATCACGGCCGACCCATTCACCTATGAAGCGCTAGCG
GCAGGGTGCGCAATGGTGGGGGACTGGCGGTCGGCGGAGGCTCTGGTCAG
AGATATGCTTAATGAGAGAAACAGGTATCGTGCTAGAGCTGCTACTGCGT
TTAAGACGAAAGCAGAGATGAGCGCTGCGGGTATCACGGCCGACCCATTC
ACCTATGAAGCGCTAGCGGCAGGGTGCGCAATGGTGGGGGACTGGCGGTC
GGCGGAGGCTCTGGTCAGAGATATGCTTAATGAGAGAAACAGGTATCGTG
CTAGAGCTGCTACTATGAGCCATACGACGATGCCAGCTCCCCCAGCCTTG
AAGCAGGGATCGCCGTCGAAGGCAACTAACACCACCTTGCCCAACACTAA
GTCCACCACGAGAGACCTCTCTCATCTTTCCTGTTCACGCACATGAGCCA
TACGACGATGCCAGCTCCCCCAGCCTTGAAGCAGGGATCGCCGTCGAAGG
CAACTAACACCACCTTGCCCAACACTAAGTCCACCACGAGAGACCTCTCT
CATCTTTCCTGTTCACGCACCGAGGGCAACAAGGGTGACCCGAAGAATAA
CAAAGGGAACAACAACAATTCGCAGAACATTCCGGAGGCCGTTCCAGAGA
ACGACCATGAATGGATCATAACACGAAAGCGGTGGCGCAGGGCAGACGGT
GTGCGCATCTTCCCCTCGGTTTTCCACGGCCTCATGGAGGCGTACGCAAG
GGCTGGGGAGTGGCAGCGCGCCGTAGACTGCCTAGATGATATGGCGCACC
CAGGGGATCACTGGGAGGGCAAGGAAGAACCTGTAGGCGCGGGCACCCGA
GGGCAACAAGGGTGACCCGAAGAATAACAAAGGGAACAACAACAATTCGC
AGAACATTCCGGAGGCCGTTCCAGAGAACGACCATGAATGGATCATAACA
CGAAAGCGGTGGCGCAGGGCAGACGGTGTGCGCATCTTCCCCTCGGTTTT
CCACGGCCTCATGGAGGCGTACGCAAGGGCTGGGGAGTGGCAGCGCGCCG
TAGACTGCCTAGATGATATGGCGCACCCAGGGGATCACTGGGAGGGCAAG
GAAGAACCTGTAGGCGCGGGCACC
back to top